Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Operophtera_20brumata_20[genbank_20GCA_5F001266575.1_202015-08-11]
25,801 sequences; 638,207,720 total letters
Query= NC_008845.1
Length=1963
Score E
Sequences producing significant alignments: (Bits) Value
seq6422 118 1e-23
seq9855 116 5e-23
seq2447 116 5e-23
>seq6422
Length=30189
Score = 118 bits (130), Expect = 1e-23
Identities = 120/150 (80%), Gaps = 6/150 (4%)
Strand=Plus/Minus
Query 1783 TGGCTGCCACAAGACTA-TCCTAGATTTAATATAAAGCTATAATATTTCCCGTGGCTGTG 1841
||||||||| | ||| | ||||| ||| ||| ||||| |||||||||||||||||
Sbjct 21244 TGGCTGCCA--ATTCTAGTACTAGACTTACCATAGCTCTATATTATTTCCCGTGGCTGTG 21187
Query 1842 GTCTTTTATTGATAACTCTTTAAAGaatataatatttcttaaagaggtataaatagcata 1901
|| |||||| |||||||||| | || | |||| ||||||||||||||||||||||||
Sbjct 21186 GTATTTTATATGTAACTCTTTACATAAGTTTATATATCTTAAAGAGGTATAAATAGCATA 21127
Query 1902 tagctat-agctatatagtaagaaatatat 1930
||| ||| ||||| | || |||||| |||
Sbjct 21126 TAG-TATAAGCTA-ACAGCTAGAAATGTAT 21099
>seq9855
Length=15086
Score = 116 bits (128), Expect = 5e-23
Identities = 136/179 (76%), Gaps = 5/179 (3%)
Strand=Plus/Minus
Query 1754 GACAGCCCGA-GTTGCAGTAGTGGCAGCTATGGCTGCCACAAGACTA-TCCTAGATTTAA 1811
||||| |||| | || | |||||| ||||||||| | ||| | ||||| |||
Sbjct 3290 GACAGACCGAAGACGCTGATGTGGCAAACGTGGCTGCCA--ATTCTAGTACTAGACTTAC 3233
Query 1812 TATAAAGCTATAATATTTCCCGTGGCTGTGGTCTTTTATTGATAACTCTTTAAAGaatat 1871
||| ||||| ||||||||||||||||||| |||||| |||||||||| | || |
Sbjct 3232 CATAGCTCTATATTATTTCCCGTGGCTGTGGTATTTTATATGTAACTCTTTACATAAGTT 3173
Query 1872 aatatttcttaaagaggtataaatagcatatagctatagctatatagtaagaaatatat 1930
|||| ||||||||||||||||||||||||||| ||||| | || |||||| |||
Sbjct 3172 TATATATCTTAAAGAGGTATAAATAGCATATAGTGTAAGCTA-ACAGCTAGAAATGTAT 3115
>seq2447
Length=64305
Score = 116 bits (128), Expect = 5e-23
Identities = 110/139 (79%), Gaps = 1/139 (1%)
Strand=Plus/Plus
Query 1797 CTATCCTAGATTTAATATAAAGCTATAATATTTCCCGTGGCTGTGGTCTTTTATTGATAA 1856
|||| |||||||| |||| ||||| ||||| ||||||||||| ||||| ||
Sbjct 3142 CTATTCTAGATTTGCTATAGCTCTATACGATTTCTTGTGGCTGTGGTTATTTATATCAAA 3201
Query 1857 CTCTTTAAAGaatataatatttcttaaagaggtataaatagcatatagctatagctatat 1916
||||||||| || | |||| |||||||||||||||||||| | |||| |||||||||
Sbjct 3202 CTCTTTAAATAAGTTTATATATCTTAAAGAGGTATAAATAGGAAATAGAACTAGCTATAT 3261
Query 1917 agtaagaaatatatGTATA 1935
||| |||||| ||| ||||
Sbjct 3262 AGTTAGAAATGTAT-TATA 3279
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 6171107815614
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |