Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Operophtera_20brumata_20[genbank_20GCA_5F001266575.1_202015-08-11] 25,801 sequences; 638,207,720 total letters Query= NC_008845.1 Length=1963 Score E Sequences producing significant alignments: (Bits) Value seq6422 118 1e-23 seq9855 116 5e-23 seq2447 116 5e-23 >seq6422 Length=30189 Score = 118 bits (130), Expect = 1e-23 Identities = 120/150 (80%), Gaps = 6/150 (4%) Strand=Plus/Minus Query 1783 TGGCTGCCACAAGACTA-TCCTAGATTTAATATAAAGCTATAATATTTCCCGTGGCTGTG 1841 ||||||||| | ||| | ||||| ||| ||| ||||| ||||||||||||||||| Sbjct 21244 TGGCTGCCA--ATTCTAGTACTAGACTTACCATAGCTCTATATTATTTCCCGTGGCTGTG 21187 Query 1842 GTCTTTTATTGATAACTCTTTAAAGaatataatatttcttaaagaggtataaatagcata 1901 || |||||| |||||||||| | || | |||| |||||||||||||||||||||||| Sbjct 21186 GTATTTTATATGTAACTCTTTACATAAGTTTATATATCTTAAAGAGGTATAAATAGCATA 21127 Query 1902 tagctat-agctatatagtaagaaatatat 1930 ||| ||| ||||| | || |||||| ||| Sbjct 21126 TAG-TATAAGCTA-ACAGCTAGAAATGTAT 21099 >seq9855 Length=15086 Score = 116 bits (128), Expect = 5e-23 Identities = 136/179 (76%), Gaps = 5/179 (3%) Strand=Plus/Minus Query 1754 GACAGCCCGA-GTTGCAGTAGTGGCAGCTATGGCTGCCACAAGACTA-TCCTAGATTTAA 1811 ||||| |||| | || | |||||| ||||||||| | ||| | ||||| ||| Sbjct 3290 GACAGACCGAAGACGCTGATGTGGCAAACGTGGCTGCCA--ATTCTAGTACTAGACTTAC 3233 Query 1812 TATAAAGCTATAATATTTCCCGTGGCTGTGGTCTTTTATTGATAACTCTTTAAAGaatat 1871 ||| ||||| ||||||||||||||||||| |||||| |||||||||| | || | Sbjct 3232 CATAGCTCTATATTATTTCCCGTGGCTGTGGTATTTTATATGTAACTCTTTACATAAGTT 3173 Query 1872 aatatttcttaaagaggtataaatagcatatagctatagctatatagtaagaaatatat 1930 |||| ||||||||||||||||||||||||||| ||||| | || |||||| ||| Sbjct 3172 TATATATCTTAAAGAGGTATAAATAGCATATAGTGTAAGCTA-ACAGCTAGAAATGTAT 3115 >seq2447 Length=64305 Score = 116 bits (128), Expect = 5e-23 Identities = 110/139 (79%), Gaps = 1/139 (1%) Strand=Plus/Plus Query 1797 CTATCCTAGATTTAATATAAAGCTATAATATTTCCCGTGGCTGTGGTCTTTTATTGATAA 1856 |||| |||||||| |||| ||||| ||||| ||||||||||| ||||| || Sbjct 3142 CTATTCTAGATTTGCTATAGCTCTATACGATTTCTTGTGGCTGTGGTTATTTATATCAAA 3201 Query 1857 CTCTTTAAAGaatataatatttcttaaagaggtataaatagcatatagctatagctatat 1916 ||||||||| || | |||| |||||||||||||||||||| | |||| ||||||||| Sbjct 3202 CTCTTTAAATAAGTTTATATATCTTAAAGAGGTATAAATAGGAAATAGAACTAGCTATAT 3261 Query 1917 agtaagaaatatatGTATA 1935 ||| |||||| ||| |||| Sbjct 3262 AGTTAGAAATGTAT-TATA 3279 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6171107815614