Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Operophtera_20brumata_20[genbank_20GCA_5F001266575.1_202015-08-11] 25,801 sequences; 638,207,720 total letters Query= NC_008847.1 Length=2005 Score E Sequences producing significant alignments: (Bits) Value seq9855 138 1e-29 seq6422 134 2e-28 seq2447 107 2e-20 >seq9855 Length=15086 Score = 138 bits (152), Expect = 1e-29 Identities = 132/164 (80%), Gaps = 5/164 (3%) Strand=Plus/Plus Query 484 TATACTAAATATTCCTATAGCGTTTTTGTGATTATTTTC-ATAGCAGTACACTCCTAGCT 542 ||||||| || ||| |||| | ||| | || ||| | |||||| |||| | |||||| Sbjct 3070 TATACTATATTTTCATATAACTTTTAT-TGGCTATGCCCTATAGCAATACATTTCTAGCT 3128 Query 543 ATATAGCTATCATTATATCCTAT--ATACCTCTTTAAGATATTTAAAATTATGAAAAGAG 600 | ||||| || ||||| |||| ||||||||||||||||| |||| ||||| |||||| Sbjct 3129 GT-TAGCTTACACTATATGCTATTTATACCTCTTTAAGATATATAAACTTATGTAAAGAG 3187 Query 601 TTCAATATAAGATACCACAGCCACGAGAAATAATATAAAGCTAT 644 || |||||| |||||||||||||| ||||||||||| |||||| Sbjct 3188 TTACATATAAAATACCACAGCCACGGGAAATAATATAGAGCTAT 3231 >seq6422 Length=30189 Score = 134 bits (148), Expect = 2e-28 Identities = 131/164 (80%), Gaps = 5/164 (3%) Strand=Plus/Plus Query 484 TATACTAAATATTCCTATAGCGTTTTTGTGATTATTTTC-ATAGCAGTACACTCCTAGCT 542 ||||||| || ||| |||| | ||| | || ||| | |||||| |||| | |||||| Sbjct 21054 TATACTATATTTTCATATAACTTTTAT-TGGCTATGCCCTATAGCAATACATTTCTAGCT 21112 Query 543 ATATAGCTATCATTATATCCTAT--ATACCTCTTTAAGATATTTAAAATTATGAAAAGAG 600 | ||||| | ||||| |||| ||||||||||||||||| |||| ||||| |||||| Sbjct 21113 GT-TAGCTTATACTATATGCTATTTATACCTCTTTAAGATATATAAACTTATGTAAAGAG 21171 Query 601 TTCAATATAAGATACCACAGCCACGAGAAATAATATAAAGCTAT 644 || |||||| |||||||||||||| ||||||||||| |||||| Sbjct 21172 TTACATATAAAATACCACAGCCACGGGAAATAATATAGAGCTAT 21215 >seq2447 Length=64305 Score = 107 bits (118), Expect = 2e-20 Identities = 95/118 (81%), Gaps = 2/118 (2%) Strand=Plus/Minus Query 530 TACACTCCTAGCTATATAGCTATCATTATATCCTAT--ATACCTCTTTAAGATATTTAAA 587 |||| | ||| ||||||||||| ||| |||||| ||||||||||||||||| |||| Sbjct 3274 TACATTTCTAACTATATAGCTAGTTCTATTTCCTATTTATACCTCTTTAAGATATATAAA 3215 Query 588 ATTATGAAAAGAGTTCAATATAAGATACCACAGCCACGAGAAATAATATAAAGCTATA 645 |||| |||||||| |||||| ||||||||||| |||||| |||| ||||||| Sbjct 3214 CTTATTTAAAGAGTTTGATATAAATAACCACAGCCACAAGAAATCGTATAGAGCTATA 3157 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6305470971786