Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Operophtera_20brumata_20[genbank_20GCA_5F001266575.1_202015-08-11] 25,801 sequences; 638,207,720 total letters Query= NC_008848.1 Length=2066 Score E Sequences producing significant alignments: (Bits) Value seq2447 145 1e-31 seq9855 140 4e-30 seq6422 136 5e-29 seq1896 77.0 4e-11 >seq2447 Length=64305 Score = 145 bits (160), Expect = 1e-31 Identities = 126/155 (81%), Gaps = 1/155 (1%) Strand=Plus/Minus Query 952 ATAATAATATACTCCTAGCCTTATAGCTAGAGTGATATCCTATTTATAACTCTTTAAGAT 1011 || |||||| | | ||| | ||||||||| || ||||||||||| ||||||||||| Sbjct 3281 ATTATAATACATTTCTAACTATATAGCTAGTTCTATTTCCTATTTATACCTCTTTAAGAT 3222 Query 1012 AAATTAACTTATTTAAAGAGTTGGATATAAAATACCACAGCCACGAGAAATCTTTTAATG 1071 | || ||||||||||||||||| |||||||| ||||||||||| ||||||| | || | Sbjct 3221 ATATAAACTTATTTAAAGAGTTTGATATAAATAACCACAGCCACAAGAAATCGTATAGAG 3162 Query 1072 CTATAGCAAATTAAGGATAGGAAATGGTCAGCCAC 1106 ||||||||||| || ||| || |||||| ||||| Sbjct 3161 CTATAGCAAATCTAGAATA-GAGATGGTCCGCCAC 3128 >seq9855 Length=15086 Score = 140 bits (154), Expect = 4e-30 Identities = 241/336 (72%), Gaps = 13/336 (4%) Strand=Plus/Plus Query 789 ATTGGATTCCTTTCACCAAGATGAGTCCAACGAGCCC-TCATCCATCTTGGAATACCTGC 847 || |||||||| | ||||| || ||||||| | || | || | | ||| || | Sbjct 2945 ATCGGATTCCTCGCGTCAAGACGAATCCAACGGGTCCATGGTCGACCAAA-AATGGCTAC 3003 Query 848 GGGAAGTGCCTGAGTGGCCAT--GTGGCGGGTGTGGCAGGC-ATTTCCTATCCTACTTTA 904 |||||| || || ||| || |||||||||||||||| | | || ||| || | | Sbjct 3004 TGGAAGTCCCCGATTGGAAATTGGTGGCGGGTGTGGCAGCCCAGATC--ATCACACCTCA 3061 Query 905 GCTTACGCTCATACCATGCCTTAAAATAGCCTCTAGTGCCTTAACAC-ATAATAATATAC 963 ||||| ||| |||| || || | ||| | | || || || | | ||| |||| | Sbjct 3062 GCTTATGCT-ATACTATATTTTCATATAACTTTTATTGGCTATGCCCTATAGCAATACAT 3120 Query 964 TCCTAGCCTTATAGCT-AGAGTGATATCCTATTTATAACTCTTTAAGATAAATTAACTTA 1022 | ||||| | ||||| | | | |||| ||||||||| |||||||||||| || |||||| Sbjct 3121 TTCTAGCTGT-TAGCTTACACT-ATATGCTATTTATACCTCTTTAAGATATATAAACTTA 3178 Query 1023 TTTAAAGAGTTGGATATAAAATACCACAGCCACGAGAAATCTTTTAATGCTATAGCAAAT 1082 | ||||||||| ||||||||||||||||||||| ||||| | || ||||| | || | Sbjct 3179 TGTAAAGAGTTACATATAAAATACCACAGCCACGGGAAATAATATAGAGCTATGGTAAGT 3238 Query 1083 TAAGGATAGGAAATGGTCAGCCACGGTCGCCACATC 1118 || | ||| ||| |||||||| | |||||||| Sbjct 3239 CTAGTACTAGAATTGG-CAGCCACGTTTGCCACATC 3273 >seq6422 Length=30189 Score = 136 bits (150), Expect = 5e-29 Identities = 240/336 (71%), Gaps = 13/336 (4%) Strand=Plus/Plus Query 789 ATTGGATTCCTTTCACCAAGATGAGTCCAACGAGCCC-TCATCCATCTTGGAATACCTGC 847 || |||||||| | ||||| || ||||||| | || | || | | ||| || | Sbjct 20929 ATCGGATTCCTCGCGTCAAGACGAATCCAACGGGTCCATGGTCGACCAAA-AATGGCTAC 20987 Query 848 GGGAAGTGCCTGAGTGGCCAT--GTGGCGGGTGTGGCAGGC-ATTTCCTATCCTACTTTA 904 |||||| || || ||| || |||||||||||||||| | | || | || || | | Sbjct 20988 TGGAAGTCCCCGATTGGAAATTGGTGGCGGGTGTGGCAGCCCAGATCATCTC--ACCTCA 21045 Query 905 GCTTACGCTCATACCATGCCTTAAAATAGCCTCTAGTGCCTTAACAC-ATAATAATATAC 963 ||||| ||| |||| || || | ||| | | || || || | | ||| |||| | Sbjct 21046 GCTTATGCT-ATACTATATTTTCATATAACTTTTATTGGCTATGCCCTATAGCAATACAT 21104 Query 964 TCCTAGCCTTATAGCT-AGAGTGATATCCTATTTATAACTCTTTAAGATAAATTAACTTA 1022 | ||||| | ||||| | | | |||| ||||||||| |||||||||||| || |||||| Sbjct 21105 TTCTAGCTGT-TAGCTTATACT-ATATGCTATTTATACCTCTTTAAGATATATAAACTTA 21162 Query 1023 TTTAAAGAGTTGGATATAAAATACCACAGCCACGAGAAATCTTTTAATGCTATAGCAAAT 1082 | ||||||||| ||||||||||||||||||||| ||||| | || ||||| | || | Sbjct 21163 TGTAAAGAGTTACATATAAAATACCACAGCCACGGGAAATAATATAGAGCTATGGTAAGT 21222 Query 1083 TAAGGATAGGAAATGGTCAGCCACGGTCGCCACATC 1118 || | ||| ||| |||||||| | ||||||| Sbjct 21223 CTAGTACTAGAATTGG-CAGCCACGTTTACCACATC 21257 >seq1896 Length=105120 Score = 77.0 bits (84), Expect = 4e-11 Identities = 97/131 (74%), Gaps = 13/131 (10%) Strand=Plus/Plus Query 975 TAGCTAGAGTGATATCC-TATTTATAACTCTTTAAGATAAA----TTAACTTATTTAAAG 1029 ||||||| | ||| || ||||||| | ||| |||||| | | || ||||||||| Sbjct 45655 TAGCTAGTGCTATAACCCTATTTATTCCCCTTCAAGATATAAGTATAAAATTATTTAAAC 45714 Query 1030 AGTTGGATATAAAATACCACAGCCACGAGAAATCTTTTAATGCTATAGCAAATTAAGGAT 1089 ||||||||||||||||||| |||||| | ||| ||||||| |||| ||||| Sbjct 45715 -------TATAAAATACCACAGCCACAAGAAATTATATAAAGCTATAGTAAATCTAGGAT 45767 Query 1090 AGGAAATGGTC 1100 | |||||| || Sbjct 45768 A-GAAATGATC 45777 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6500617460512