Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Operophtera_20brumata_20[genbank_20GCA_5F001266575.1_202015-08-11]
25,801 sequences; 638,207,720 total letters
Query= NC_008849.1
Length=2074
Score E
Sequences producing significant alignments: (Bits) Value
seq9855 179 5e-42
seq6422 179 5e-42
seq2447 149 8e-33
seq1896 107 3e-20
seq1668 86.0 8e-14
seq171 77.0 4e-11
>seq9855
Length=15086
Score = 179 bits (198), Expect = 5e-42
Identities = 298/417 (71%), Gaps = 15/417 (4%)
Strand=Plus/Plus
Query 1424 AAAAAGTACCTGCCAAGCATTTTGGGCACTTTTGGGCTTATAAAAATTTGCCCTTTAGGC 1483
||||| ||||||| | ||| ||| | ||| | | || || ||| || ||||| | |
Sbjct 2863 AAAAATTACCTGCTACTCATGTTGATTATTTTCGTGGTTGTAGAAAGTTACCCTTCAAGG 2922
Query 1484 TCTACCTTT-GAAATCAGGCACGTTGGATTCTTCTTTTCGAGACAAATCCAACGAG-CCA 1541
|| ||| | || |||| | | |||||| || || |||| ||||||||| | |||
Sbjct 2923 TCACCCTCCCGTGATTAGGCTCATCGGATTCCTCGCGTCAAGACGAATCCAACGGGTCCA 2982
Query 1542 TGGGTCATCTCTAAATTCCCACGGAAAGTGTCGAAGTGGTCGT--GTGGCGGGTTTGGCA 1599
||| || | |||| | || | |||| | | ||| | ||||||||| |||||
Sbjct 2983 TGG-TCGACCAAAAATGGCTACTGGAAGTCCCCGATTGGAAATTGGTGGCGGGTGTGGCA 3041
Query 1600 GCC-ATTTCCTATACCGGCTCACCTTTAACTATACTATGATATATTCGTACAGTCTTTAT 1658
||| | || || | |||| ||| ||||||||| || ||| || | |||||
Sbjct 3042 GCCCAGATC--ATCACACCTCAGCTTATGCTATACTAT---ATTTTCATATAACTTTTAT 3096
Query 1659 CGGCTATGCC-TACTGCAATATCTTTCTAGC-GTTATGTCTATTGCTATTTCCTATTTAT 1716
||||||||| || |||||| |||||||| |||| | || |||| | ||||||||
Sbjct 3097 TGGCTATGCCCTATAGCAATACATTTCTAGCTGTTAGCT-TACA-CTATATGCTATTTAT 3154
Query 1717 GCCTCTTTAAGATATATAAACTTATCTAAAGAGTTAATTATAAAATACCACAGCCACAAG 1776
|||||||||||||||||||||||| |||||||||| ||||||||||||||||||| |
Sbjct 3155 ACCTCTTTAAGATATATAAACTTATGTAAAGAGTTACATATAAAATACCACAGCCACGGG 3214
Query 1777 AAATAATGTAAAGCTATAGCAAATTTAGGATTGAAATGACCAGCCATATTCGCCACA 1833
||||||| || |||||| | || | ||| | | ||| |||||| || ||||||
Sbjct 3215 AAATAATATAGAGCTATGGTAAGTCTAGTACTAGAATTGGCAGCCACGTTTGCCACA 3271
>seq6422
Length=30189
Score = 179 bits (198), Expect = 5e-42
Identities = 298/417 (71%), Gaps = 15/417 (4%)
Strand=Plus/Plus
Query 1424 AAAAAGTACCTGCCAAGCATTTTGGGCACTTTTGGGCTTATAAAAATTTGCCCTTTAGGC 1483
||||| ||||||| | ||| ||| | ||| | | || || ||| || ||||| | |
Sbjct 20847 AAAAATTACCTGCTACTCATGTTGATTATTTTCGTGGTTGTAGAAAGTTACCCTTCAAGG 20906
Query 1484 TCTACCTTT-GAAATCAGGCACGTTGGATTCTTCTTTTCGAGACAAATCCAACGAG-CCA 1541
|| ||| | || |||| | | |||||| || || |||| ||||||||| | |||
Sbjct 20907 TCACCCTCCCGTGATTAGGCTCATCGGATTCCTCGCGTCAAGACGAATCCAACGGGTCCA 20966
Query 1542 TGGGTCATCTCTAAATTCCCACGGAAAGTGTCGAAGTGGTCGT--GTGGCGGGTTTGGCA 1599
||| || | |||| | || | |||| | | ||| | ||||||||| |||||
Sbjct 20967 TGG-TCGACCAAAAATGGCTACTGGAAGTCCCCGATTGGAAATTGGTGGCGGGTGTGGCA 21025
Query 1600 GCC-ATTTCCTATACCGGCTCACCTTTAACTATACTATGATATATTCGTACAGTCTTTAT 1658
||| | || | | | |||| ||| ||||||||| || ||| || | |||||
Sbjct 21026 GCCCAGATCATCTCAC--CTCAGCTTATGCTATACTAT---ATTTTCATATAACTTTTAT 21080
Query 1659 CGGCTATGCC-TACTGCAATATCTTTCTAGC-GTTATGTCTATTGCTATTTCCTATTTAT 1716
||||||||| || |||||| |||||||| |||| | ||| |||| | ||||||||
Sbjct 21081 TGGCTATGCCCTATAGCAATACATTTCTAGCTGTTAGCT-TATA-CTATATGCTATTTAT 21138
Query 1717 GCCTCTTTAAGATATATAAACTTATCTAAAGAGTTAATTATAAAATACCACAGCCACAAG 1776
|||||||||||||||||||||||| |||||||||| ||||||||||||||||||| |
Sbjct 21139 ACCTCTTTAAGATATATAAACTTATGTAAAGAGTTACATATAAAATACCACAGCCACGGG 21198
Query 1777 AAATAATGTAAAGCTATAGCAAATTTAGGATTGAAATGACCAGCCATATTCGCCACA 1833
||||||| || |||||| | || | ||| | | ||| |||||| || |||||
Sbjct 21199 AAATAATATAGAGCTATGGTAAGTCTAGTACTAGAATTGGCAGCCACGTTTACCACA 21255
>seq2447
Length=64305
Score = 149 bits (164), Expect = 8e-33
Identities = 151/194 (78%), Gaps = 2/194 (1%)
Strand=Plus/Minus
Query 1629 TATACTATGATATATTCGTACAGTCTTTATCGGCTATGCCTACTGCAATATCTTTCTAGC 1688
|||||||| ||| || || | | | ||| | ||| || || | |||| |||||| |
Sbjct 3320 TATACTATTATAATTTACTATACT-TATAT-GACTACGCTTATTATAATACATTTCTAAC 3263
Query 1689 GTTATGTCTATTGCTATTTCCTATTTATGCCTCTTTAAGATATATAAACTTATCTAAAGA 1748
||| ||| | ||||||||||||||| |||||||||||||||||||||||| ||||||
Sbjct 3262 TATATAGCTAGTTCTATTTCCTATTTATACCTCTTTAAGATATATAAACTTATTTAAAGA 3203
Query 1749 GTTAATTATAAAATACCACAGCCACAAGAAATAATGTAAAGCTATAGCAAATTTAGGATT 1808
||| |||||| |||||||||||||||||| | || ||||||||||||| ||| ||
Sbjct 3202 GTTTGATATAAATAACCACAGCCACAAGAAATCGTATAGAGCTATAGCAAATCTAGAATA 3143
Query 1809 GAAATGACCAGCCA 1822
|| ||| | ||||
Sbjct 3142 GAGATGGTCCGCCA 3129
>seq1896
Length=105120
Score = 107 bits (118), Expect = 3e-20
Identities = 110/143 (77%), Gaps = 17/143 (12%)
Strand=Plus/Plus
Query 1696 CTATTGCTATTTCC-TATTTATGCCTCTTTAAGATATA----TAAACTTATCTAAAGAGT 1750
||| |||||| || ||||||| || ||| |||||||| |||| |||| ||||
Sbjct 45658 CTAGTGCTATAACCCTATTTATTCCCCTTCAAGATATAAGTATAAAATTATTTAAAC--- 45714
Query 1751 TAATTATAAAATACCACAGCCACAAGAAATAATGTAAAGCTATAGCAAATTTAGGATTGA 1810
|||||||||||||||||||||||||| || ||||||||||| |||| |||||| ||
Sbjct 45715 ----TATAAAATACCACAGCCACAAGAAATTATATAAAGCTATAGTAAATCTAGGATAGA 45770
Query 1811 AATGACCAGCCATATTCGCCACA 1833
||||| | |||| ||||||
Sbjct 45771 AATGATC-----TATTAGCCACA 45788
>seq1668
Length=82418
Score = 86.0 bits (94), Expect = 8e-14
Identities = 79/99 (80%), Gaps = 11/99 (11%)
Strand=Plus/Minus
Query 1718 CCTCTTTAAGATATA----TAAACTTATCTAAAGAGTTAATTATAAAATACCACAGCCAC 1773
|||||| |||||||| |||| |||| |||| | |||||||||||||| ||||
Sbjct 67448 CCTCTTCAAGATATAAGTATAAAATTAT-TAAA------ACTATAAAATACCACACCCAC 67396
Query 1774 AAGAAATAATGTAAAGCTATAGCAAATTTAGGATTGAAA 1812
||||||| || ||||||||||| |||| |||||| ||||
Sbjct 67395 AAGAAATCATATAAAGCTATAGTAAATCTAGGATAGAAA 67357
>seq171
Length=184467
Score = 77.0 bits (84), Expect = 4e-11
Identities = 84/110 (76%), Gaps = 10/110 (9%)
Strand=Plus/Minus
Query 1708 CCTATTTATGCCTCTTTAAGATATA--TAAACTTATCTAAAGAGTTAATTATAAAATACC 1765
||||||||| |||||| | |||||| || || | |||| || |||||||||||
Sbjct 158885 CCTATTTATACCTCTTCAGGATATAAGTATACAATTATAAA-----AACTATAAAATACC 158831
Query 1766 ACAGCCACAAGAA---ATAATGTAAAGCTATAGCAAATTTAGGATTGAAA 1812
||||||||||||| ||| | | |||||||| |||| |||||| ||||
Sbjct 158830 ACAGCCACAAGAAATCATATTATGAAGCTATATTAAATCTAGGATAGAAA 158781
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 6526210442640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |