Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Operophtera_20brumata_20[genbank_20GCA_5F001266575.1_202015-08-11] 25,801 sequences; 638,207,720 total letters Query= NC_008849.1 Length=2074 Score E Sequences producing significant alignments: (Bits) Value seq9855 179 5e-42 seq6422 179 5e-42 seq2447 149 8e-33 seq1896 107 3e-20 seq1668 86.0 8e-14 seq171 77.0 4e-11 >seq9855 Length=15086 Score = 179 bits (198), Expect = 5e-42 Identities = 298/417 (71%), Gaps = 15/417 (4%) Strand=Plus/Plus Query 1424 AAAAAGTACCTGCCAAGCATTTTGGGCACTTTTGGGCTTATAAAAATTTGCCCTTTAGGC 1483 ||||| ||||||| | ||| ||| | ||| | | || || ||| || ||||| | | Sbjct 2863 AAAAATTACCTGCTACTCATGTTGATTATTTTCGTGGTTGTAGAAAGTTACCCTTCAAGG 2922 Query 1484 TCTACCTTT-GAAATCAGGCACGTTGGATTCTTCTTTTCGAGACAAATCCAACGAG-CCA 1541 || ||| | || |||| | | |||||| || || |||| ||||||||| | ||| Sbjct 2923 TCACCCTCCCGTGATTAGGCTCATCGGATTCCTCGCGTCAAGACGAATCCAACGGGTCCA 2982 Query 1542 TGGGTCATCTCTAAATTCCCACGGAAAGTGTCGAAGTGGTCGT--GTGGCGGGTTTGGCA 1599 ||| || | |||| | || | |||| | | ||| | ||||||||| ||||| Sbjct 2983 TGG-TCGACCAAAAATGGCTACTGGAAGTCCCCGATTGGAAATTGGTGGCGGGTGTGGCA 3041 Query 1600 GCC-ATTTCCTATACCGGCTCACCTTTAACTATACTATGATATATTCGTACAGTCTTTAT 1658 ||| | || || | |||| ||| ||||||||| || ||| || | ||||| Sbjct 3042 GCCCAGATC--ATCACACCTCAGCTTATGCTATACTAT---ATTTTCATATAACTTTTAT 3096 Query 1659 CGGCTATGCC-TACTGCAATATCTTTCTAGC-GTTATGTCTATTGCTATTTCCTATTTAT 1716 ||||||||| || |||||| |||||||| |||| | || |||| | |||||||| Sbjct 3097 TGGCTATGCCCTATAGCAATACATTTCTAGCTGTTAGCT-TACA-CTATATGCTATTTAT 3154 Query 1717 GCCTCTTTAAGATATATAAACTTATCTAAAGAGTTAATTATAAAATACCACAGCCACAAG 1776 |||||||||||||||||||||||| |||||||||| ||||||||||||||||||| | Sbjct 3155 ACCTCTTTAAGATATATAAACTTATGTAAAGAGTTACATATAAAATACCACAGCCACGGG 3214 Query 1777 AAATAATGTAAAGCTATAGCAAATTTAGGATTGAAATGACCAGCCATATTCGCCACA 1833 ||||||| || |||||| | || | ||| | | ||| |||||| || |||||| Sbjct 3215 AAATAATATAGAGCTATGGTAAGTCTAGTACTAGAATTGGCAGCCACGTTTGCCACA 3271 >seq6422 Length=30189 Score = 179 bits (198), Expect = 5e-42 Identities = 298/417 (71%), Gaps = 15/417 (4%) Strand=Plus/Plus Query 1424 AAAAAGTACCTGCCAAGCATTTTGGGCACTTTTGGGCTTATAAAAATTTGCCCTTTAGGC 1483 ||||| ||||||| | ||| ||| | ||| | | || || ||| || ||||| | | Sbjct 20847 AAAAATTACCTGCTACTCATGTTGATTATTTTCGTGGTTGTAGAAAGTTACCCTTCAAGG 20906 Query 1484 TCTACCTTT-GAAATCAGGCACGTTGGATTCTTCTTTTCGAGACAAATCCAACGAG-CCA 1541 || ||| | || |||| | | |||||| || || |||| ||||||||| | ||| Sbjct 20907 TCACCCTCCCGTGATTAGGCTCATCGGATTCCTCGCGTCAAGACGAATCCAACGGGTCCA 20966 Query 1542 TGGGTCATCTCTAAATTCCCACGGAAAGTGTCGAAGTGGTCGT--GTGGCGGGTTTGGCA 1599 ||| || | |||| | || | |||| | | ||| | ||||||||| ||||| Sbjct 20967 TGG-TCGACCAAAAATGGCTACTGGAAGTCCCCGATTGGAAATTGGTGGCGGGTGTGGCA 21025 Query 1600 GCC-ATTTCCTATACCGGCTCACCTTTAACTATACTATGATATATTCGTACAGTCTTTAT 1658 ||| | || | | | |||| ||| ||||||||| || ||| || | ||||| Sbjct 21026 GCCCAGATCATCTCAC--CTCAGCTTATGCTATACTAT---ATTTTCATATAACTTTTAT 21080 Query 1659 CGGCTATGCC-TACTGCAATATCTTTCTAGC-GTTATGTCTATTGCTATTTCCTATTTAT 1716 ||||||||| || |||||| |||||||| |||| | ||| |||| | |||||||| Sbjct 21081 TGGCTATGCCCTATAGCAATACATTTCTAGCTGTTAGCT-TATA-CTATATGCTATTTAT 21138 Query 1717 GCCTCTTTAAGATATATAAACTTATCTAAAGAGTTAATTATAAAATACCACAGCCACAAG 1776 |||||||||||||||||||||||| |||||||||| ||||||||||||||||||| | Sbjct 21139 ACCTCTTTAAGATATATAAACTTATGTAAAGAGTTACATATAAAATACCACAGCCACGGG 21198 Query 1777 AAATAATGTAAAGCTATAGCAAATTTAGGATTGAAATGACCAGCCATATTCGCCACA 1833 ||||||| || |||||| | || | ||| | | ||| |||||| || ||||| Sbjct 21199 AAATAATATAGAGCTATGGTAAGTCTAGTACTAGAATTGGCAGCCACGTTTACCACA 21255 >seq2447 Length=64305 Score = 149 bits (164), Expect = 8e-33 Identities = 151/194 (78%), Gaps = 2/194 (1%) Strand=Plus/Minus Query 1629 TATACTATGATATATTCGTACAGTCTTTATCGGCTATGCCTACTGCAATATCTTTCTAGC 1688 |||||||| ||| || || | | | ||| | ||| || || | |||| |||||| | Sbjct 3320 TATACTATTATAATTTACTATACT-TATAT-GACTACGCTTATTATAATACATTTCTAAC 3263 Query 1689 GTTATGTCTATTGCTATTTCCTATTTATGCCTCTTTAAGATATATAAACTTATCTAAAGA 1748 ||| ||| | ||||||||||||||| |||||||||||||||||||||||| |||||| Sbjct 3262 TATATAGCTAGTTCTATTTCCTATTTATACCTCTTTAAGATATATAAACTTATTTAAAGA 3203 Query 1749 GTTAATTATAAAATACCACAGCCACAAGAAATAATGTAAAGCTATAGCAAATTTAGGATT 1808 ||| |||||| |||||||||||||||||| | || ||||||||||||| ||| || Sbjct 3202 GTTTGATATAAATAACCACAGCCACAAGAAATCGTATAGAGCTATAGCAAATCTAGAATA 3143 Query 1809 GAAATGACCAGCCA 1822 || ||| | |||| Sbjct 3142 GAGATGGTCCGCCA 3129 >seq1896 Length=105120 Score = 107 bits (118), Expect = 3e-20 Identities = 110/143 (77%), Gaps = 17/143 (12%) Strand=Plus/Plus Query 1696 CTATTGCTATTTCC-TATTTATGCCTCTTTAAGATATA----TAAACTTATCTAAAGAGT 1750 ||| |||||| || ||||||| || ||| |||||||| |||| |||| |||| Sbjct 45658 CTAGTGCTATAACCCTATTTATTCCCCTTCAAGATATAAGTATAAAATTATTTAAAC--- 45714 Query 1751 TAATTATAAAATACCACAGCCACAAGAAATAATGTAAAGCTATAGCAAATTTAGGATTGA 1810 |||||||||||||||||||||||||| || ||||||||||| |||| |||||| || Sbjct 45715 ----TATAAAATACCACAGCCACAAGAAATTATATAAAGCTATAGTAAATCTAGGATAGA 45770 Query 1811 AATGACCAGCCATATTCGCCACA 1833 ||||| | |||| |||||| Sbjct 45771 AATGATC-----TATTAGCCACA 45788 >seq1668 Length=82418 Score = 86.0 bits (94), Expect = 8e-14 Identities = 79/99 (80%), Gaps = 11/99 (11%) Strand=Plus/Minus Query 1718 CCTCTTTAAGATATA----TAAACTTATCTAAAGAGTTAATTATAAAATACCACAGCCAC 1773 |||||| |||||||| |||| |||| |||| | |||||||||||||| |||| Sbjct 67448 CCTCTTCAAGATATAAGTATAAAATTAT-TAAA------ACTATAAAATACCACACCCAC 67396 Query 1774 AAGAAATAATGTAAAGCTATAGCAAATTTAGGATTGAAA 1812 ||||||| || ||||||||||| |||| |||||| |||| Sbjct 67395 AAGAAATCATATAAAGCTATAGTAAATCTAGGATAGAAA 67357 >seq171 Length=184467 Score = 77.0 bits (84), Expect = 4e-11 Identities = 84/110 (76%), Gaps = 10/110 (9%) Strand=Plus/Minus Query 1708 CCTATTTATGCCTCTTTAAGATATA--TAAACTTATCTAAAGAGTTAATTATAAAATACC 1765 ||||||||| |||||| | |||||| || || | |||| || ||||||||||| Sbjct 158885 CCTATTTATACCTCTTCAGGATATAAGTATACAATTATAAA-----AACTATAAAATACC 158831 Query 1766 ACAGCCACAAGAA---ATAATGTAAAGCTATAGCAAATTTAGGATTGAAA 1812 ||||||||||||| ||| | | |||||||| |||| |||||| |||| Sbjct 158830 ACAGCCACAAGAAATCATATTATGAAGCTATATTAAATCTAGGATAGAAA 158781 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6526210442640