Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Operophtera_20brumata_20[genbank_20GCA_5F001266575.1_202015-08-11] 25,801 sequences; 638,207,720 total letters Query= NC_008850.1 Length=2079 Score E Sequences producing significant alignments: (Bits) Value seq9855 154 2e-34 seq6422 150 2e-33 seq2447 84.2 3e-13 >seq9855 Length=15086 Score = 154 bits (170), Expect = 2e-34 Identities = 240/339 (71%), Gaps = 13/339 (4%) Strand=Plus/Plus Query 397 CTCATTGGATTTGTCTTGACGACACGAATCGAACGAGTCCACGCCGGTCTCGAAATTTCC 456 ||||| ||||| || | | | ||||||| |||| ||||| | | | |||| | Sbjct 2942 CTCATCGGATTCCTCGCGTCAAGACGAATCCAACGGGTCCATGGTCGACCAAAAATGGCT 3001 Query 457 ACGGGAAGTGTCCGAATGACGA--GGTGGCGAGTGTGGCAGCCGAATTCAATCCCGCCTC 514 || |||||| |||| || | ||||||| ||||||||||| | ||| || | |||| Sbjct 3002 ACTGGAAGTCCCCGATTGGAAATTGGTGGCGGGTGTGGCAGCCCAGATCA-TCACACCTC 3060 Query 515 ACCTTATATTTATACTATATTTTCACACAGCATTAAGTGACTATGCTCTATAGCAATATA 574 | ||||| | |||||||||||||| | | | || | || |||||| ||||||||||| | Sbjct 3061 AGCTTATGCT-ATACTATATTTTCATATAACTTTTATTGGCTATGCCCTATAGCAATACA 3119 Query 575 TTCCTTACTATNNNNNNNNNNNNNNNNGCTTAATATACCTCTTTAAGATAAATAAAACTA 634 || || || | ||| ||||||||||||||||| ||||| || Sbjct 3120 TTTCTAGCTGTTAGCTTACACTATAT-GCTATTTATACCTCTTTAAGATATATAAACTTA 3178 Query 635 TTAAAAGAGTTATATATAAAAGACCACAGCCACGGGAAATAAAAGTATTATTAGCTATAA 694 | ||||||||| |||||||| |||||||||||||||||||| ||| |||||| Sbjct 3179 TGTAAAGAGTTACATATAAAATACCACAGCCACGGGAAATAA---TAT--AGAGCTATGG 3233 Query 695 TAAATCTAGGA-TAGTAAGTTGGCGGCCAAGCTCGCCAC 732 ||| ||||| | ||| | ||||| |||| | | ||||| Sbjct 3234 TAAGTCTAGTACTAG--AATTGGCAGCCACGTTTGCCAC 3270 >seq6422 Length=30189 Score = 150 bits (166), Expect = 2e-33 Identities = 233/329 (71%), Gaps = 13/329 (4%) Strand=Plus/Plus Query 397 CTCATTGGATTTGTCTTGACGACACGAATCGAACGAGTCCACGCCGGTCTCGAAATTTCC 456 ||||| ||||| || | | | ||||||| |||| ||||| | | | |||| | Sbjct 20926 CTCATCGGATTCCTCGCGTCAAGACGAATCCAACGGGTCCATGGTCGACCAAAAATGGCT 20985 Query 457 ACGGGAAGTGTCCGAATGACGA--GGTGGCGAGTGTGGCAGCCGAATTCAATCCCGCCTC 514 || |||||| |||| || | ||||||| ||||||||||| | ||| || | |||| Sbjct 20986 ACTGGAAGTCCCCGATTGGAAATTGGTGGCGGGTGTGGCAGCCCAGATCA-TCTCACCTC 21044 Query 515 ACCTTATATTTATACTATATTTTCACACAGCATTAAGTGACTATGCTCTATAGCAATATA 574 | ||||| | |||||||||||||| | | | || | || |||||| ||||||||||| | Sbjct 21045 AGCTTATGCT-ATACTATATTTTCATATAACTTTTATTGGCTATGCCCTATAGCAATACA 21103 Query 575 TTCCTTACTATNNNNNNNNNNNNNNNNGCTTAATATACCTCTTTAAGATAAATAAAACTA 634 || || || | ||| ||||||||||||||||| ||||| || Sbjct 21104 TTTCTAGCTGT-TAGCTTATACTATATGCTATTTATACCTCTTTAAGATATATAAACTTA 21162 Query 635 TTAAAAGAGTTATATATAAAAGACCACAGCCACGGGAAATAAAAGTATTATTAGCTATAA 694 | ||||||||| |||||||| |||||||||||||||||||| ||| |||||| Sbjct 21163 TGTAAAGAGTTACATATAAAATACCACAGCCACGGGAAATAA---TAT--AGAGCTATGG 21217 Query 695 TAAATCTAGGA-TAGTAAGTTGGCGGCCA 722 ||| ||||| | ||| | ||||| |||| Sbjct 21218 TAAGTCTAGTACTAG--AATTGGCAGCCA 21244 >seq2447 Length=64305 Score = 84.2 bits (92), Expect = 3e-13 Identities = 80/101 (79%), Gaps = 5/101 (5%) Strand=Plus/Minus Query 608 TATACCTCTTTAAGATAAATAAAACTATTAAAAGAGTTATATATAAAAGACCACAGCCAC 667 ||||||||||||||||| ||||| |||| |||||||| ||||||| ||||||||||| Sbjct 3237 TATACCTCTTTAAGATATATAAACTTATTTAAAGAGTTTGATATAAATAACCACAGCCAC 3178 Query 668 GGGAAATAAAAGTATTATTAGCTATAATAAATCTAGGATAG 708 ||||| |||| ||||||| |||||||| |||| Sbjct 3177 AAGAAAT---CGTAT--AGAGCTATAGCAAATCTAGAATAG 3142 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6542206056470