Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Operophtera_20brumata_20[genbank_20GCA_5F001266575.1_202015-08-11]
25,801 sequences; 638,207,720 total letters
Query= NC_008850.1
Length=2079
Score E
Sequences producing significant alignments: (Bits) Value
seq9855 154 2e-34
seq6422 150 2e-33
seq2447 84.2 3e-13
>seq9855
Length=15086
Score = 154 bits (170), Expect = 2e-34
Identities = 240/339 (71%), Gaps = 13/339 (4%)
Strand=Plus/Plus
Query 397 CTCATTGGATTTGTCTTGACGACACGAATCGAACGAGTCCACGCCGGTCTCGAAATTTCC 456
||||| ||||| || | | | ||||||| |||| ||||| | | | |||| |
Sbjct 2942 CTCATCGGATTCCTCGCGTCAAGACGAATCCAACGGGTCCATGGTCGACCAAAAATGGCT 3001
Query 457 ACGGGAAGTGTCCGAATGACGA--GGTGGCGAGTGTGGCAGCCGAATTCAATCCCGCCTC 514
|| |||||| |||| || | ||||||| ||||||||||| | ||| || | ||||
Sbjct 3002 ACTGGAAGTCCCCGATTGGAAATTGGTGGCGGGTGTGGCAGCCCAGATCA-TCACACCTC 3060
Query 515 ACCTTATATTTATACTATATTTTCACACAGCATTAAGTGACTATGCTCTATAGCAATATA 574
| ||||| | |||||||||||||| | | | || | || |||||| ||||||||||| |
Sbjct 3061 AGCTTATGCT-ATACTATATTTTCATATAACTTTTATTGGCTATGCCCTATAGCAATACA 3119
Query 575 TTCCTTACTATNNNNNNNNNNNNNNNNGCTTAATATACCTCTTTAAGATAAATAAAACTA 634
|| || || | ||| ||||||||||||||||| ||||| ||
Sbjct 3120 TTTCTAGCTGTTAGCTTACACTATAT-GCTATTTATACCTCTTTAAGATATATAAACTTA 3178
Query 635 TTAAAAGAGTTATATATAAAAGACCACAGCCACGGGAAATAAAAGTATTATTAGCTATAA 694
| ||||||||| |||||||| |||||||||||||||||||| ||| ||||||
Sbjct 3179 TGTAAAGAGTTACATATAAAATACCACAGCCACGGGAAATAA---TAT--AGAGCTATGG 3233
Query 695 TAAATCTAGGA-TAGTAAGTTGGCGGCCAAGCTCGCCAC 732
||| ||||| | ||| | ||||| |||| | | |||||
Sbjct 3234 TAAGTCTAGTACTAG--AATTGGCAGCCACGTTTGCCAC 3270
>seq6422
Length=30189
Score = 150 bits (166), Expect = 2e-33
Identities = 233/329 (71%), Gaps = 13/329 (4%)
Strand=Plus/Plus
Query 397 CTCATTGGATTTGTCTTGACGACACGAATCGAACGAGTCCACGCCGGTCTCGAAATTTCC 456
||||| ||||| || | | | ||||||| |||| ||||| | | | |||| |
Sbjct 20926 CTCATCGGATTCCTCGCGTCAAGACGAATCCAACGGGTCCATGGTCGACCAAAAATGGCT 20985
Query 457 ACGGGAAGTGTCCGAATGACGA--GGTGGCGAGTGTGGCAGCCGAATTCAATCCCGCCTC 514
|| |||||| |||| || | ||||||| ||||||||||| | ||| || | ||||
Sbjct 20986 ACTGGAAGTCCCCGATTGGAAATTGGTGGCGGGTGTGGCAGCCCAGATCA-TCTCACCTC 21044
Query 515 ACCTTATATTTATACTATATTTTCACACAGCATTAAGTGACTATGCTCTATAGCAATATA 574
| ||||| | |||||||||||||| | | | || | || |||||| ||||||||||| |
Sbjct 21045 AGCTTATGCT-ATACTATATTTTCATATAACTTTTATTGGCTATGCCCTATAGCAATACA 21103
Query 575 TTCCTTACTATNNNNNNNNNNNNNNNNGCTTAATATACCTCTTTAAGATAAATAAAACTA 634
|| || || | ||| ||||||||||||||||| ||||| ||
Sbjct 21104 TTTCTAGCTGT-TAGCTTATACTATATGCTATTTATACCTCTTTAAGATATATAAACTTA 21162
Query 635 TTAAAAGAGTTATATATAAAAGACCACAGCCACGGGAAATAAAAGTATTATTAGCTATAA 694
| ||||||||| |||||||| |||||||||||||||||||| ||| ||||||
Sbjct 21163 TGTAAAGAGTTACATATAAAATACCACAGCCACGGGAAATAA---TAT--AGAGCTATGG 21217
Query 695 TAAATCTAGGA-TAGTAAGTTGGCGGCCA 722
||| ||||| | ||| | ||||| ||||
Sbjct 21218 TAAGTCTAGTACTAG--AATTGGCAGCCA 21244
>seq2447
Length=64305
Score = 84.2 bits (92), Expect = 3e-13
Identities = 80/101 (79%), Gaps = 5/101 (5%)
Strand=Plus/Minus
Query 608 TATACCTCTTTAAGATAAATAAAACTATTAAAAGAGTTATATATAAAAGACCACAGCCAC 667
||||||||||||||||| ||||| |||| |||||||| ||||||| |||||||||||
Sbjct 3237 TATACCTCTTTAAGATATATAAACTTATTTAAAGAGTTTGATATAAATAACCACAGCCAC 3178
Query 668 GGGAAATAAAAGTATTATTAGCTATAATAAATCTAGGATAG 708
||||| |||| ||||||| |||||||| ||||
Sbjct 3177 AAGAAAT---CGTAT--AGAGCTATAGCAAATCTAGAATAG 3142
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 6542206056470
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |