Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Operophtera_20brumata_20[genbank_20GCA_5F001266575.1_202015-08-11] 25,801 sequences; 638,207,720 total letters Query= NC_008851.1 Length=2080 Score E Sequences producing significant alignments: (Bits) Value seq9855 203 4e-49 seq6422 197 2e-47 seq2447 147 3e-32 seq16437 82.4 1e-12 >seq9855 Length=15086 Score = 203 bits (224), Expect = 4e-49 Identities = 202/253 (80%), Gaps = 8/253 (3%) Strand=Plus/Plus Query 838 AAATTCCTACGGGAAGTTCCCGAGTCCCAGGTG-TGGCGAGTGTGGCAGCCAA-ATCTTA 895 |||| |||| |||||| ||||| | | || ||||| ||||||||||| | ||| | Sbjct 2994 AAATGGCTACTGGAAGTCCCCGATTGGAAATTGGTGGCGGGTGTGGCAGCCCAGATC--A 3051 Query 896 TCCTACCTTAGCTTATACTTATACTATATTTCCATATAGCTTACAATGGCTAT-ATTTAT 954 || |||| ||||||| || ||||||||||| |||||| ||| | ||||||| ||| Sbjct 3052 TCACACCTCAGCTTATGCT-ATACTATATTTTCATATAACTTTTATTGGCTATGCCCTAT 3110 Query 955 AGCAATACATTCTTACCTATATAGCTAGCTttatatgctatatatacctctttaagaaat 1014 ||||||||||| || || | ||||| | |||||||||| ||||||||||||||| || Sbjct 3111 AGCAATACATTTCTAGCTGT-TAGCTTACACTATATGCTATTTATACCTCTTTAAGATAT 3169 Query 1015 ataaaattattaaaagagttatatataaaataccacagccac-gaaaataatataaagct 1073 ||||| |||| ||||||||| |||||||||||||||||||| | |||||||||| |||| Sbjct 3170 ATAAACTTATGTAAAGAGTTACATATAAAATACCACAGCCACGGGAAATAATATAGAGCT 3229 Query 1074 ataGCAATTCTAG 1086 || | || ||||| Sbjct 3230 ATGGTAAGTCTAG 3242 >seq6422 Length=30189 Score = 197 bits (218), Expect = 2e-47 Identities = 201/253 (79%), Gaps = 8/253 (3%) Strand=Plus/Plus Query 838 AAATTCCTACGGGAAGTTCCCGAGTCCCAGGTG-TGGCGAGTGTGGCAGCCAA-ATCTTA 895 |||| |||| |||||| ||||| | | || ||||| ||||||||||| | ||| | Sbjct 20978 AAATGGCTACTGGAAGTCCCCGATTGGAAATTGGTGGCGGGTGTGGCAGCCCAGATCATC 21037 Query 896 TCCTACCTTAGCTTATACTTATACTATATTTCCATATAGCTTACAATGGCTAT-ATTTAT 954 || |||| ||||||| || ||||||||||| |||||| ||| | ||||||| ||| Sbjct 21038 TC--ACCTCAGCTTATGCT-ATACTATATTTTCATATAACTTTTATTGGCTATGCCCTAT 21094 Query 955 AGCAATACATTCTTACCTATATAGCTAGCTttatatgctatatatacctctttaagaaat 1014 ||||||||||| || || | ||||| |||||||||| ||||||||||||||| || Sbjct 21095 AGCAATACATTTCTAGCTGT-TAGCTTATACTATATGCTATTTATACCTCTTTAAGATAT 21153 Query 1015 ataaaattattaaaagagttatatataaaataccacagccac-gaaaataatataaagct 1073 ||||| |||| ||||||||| |||||||||||||||||||| | |||||||||| |||| Sbjct 21154 ATAAACTTATGTAAAGAGTTACATATAAAATACCACAGCCACGGGAAATAATATAGAGCT 21213 Query 1074 ataGCAATTCTAG 1086 || | || ||||| Sbjct 21214 ATGGTAAGTCTAG 21226 >seq2447 Length=64305 Score = 147 bits (162), Expect = 3e-32 Identities = 145/182 (80%), Gaps = 8/182 (4%) Strand=Plus/Minus Query 914 TTATACTAT----ATTTCCATATAGCTTACAATGGCTATATTTATAGCAATACATTCTTA 969 ||||||||| |||| | |||| |||| | || ||| |||| |||||||| || Sbjct 3321 TTATACTATTATAATTTAC-TATA-CTTATA-TGACTACGCTTATTATAATACATTTCTA 3265 Query 970 CCTATATAGCTAGCTttatatgctatatatacctctttaagaaatataaaattattaaaa 1029 |||||||||||| | ||| | |||| ||||||||||||||| ||||||| ||||| ||| Sbjct 3264 ACTATATAGCTAGTTCTATTTCCTATTTATACCTCTTTAAGATATATAAACTTATTTAAA 3205 Query 1030 gagttatatataaaataccacagccacga-aaataatataaagctataGCAATTCTAGAA 1088 ||||| ||||||| ||||||||||| | |||| |||| ||||||||||| ||||||| Sbjct 3204 GAGTTTGATATAAATAACCACAGCCACAAGAAATCGTATAGAGCTATAGCAAATCTAGAA 3145 Query 1089 TA 1090 || Sbjct 3144 TA 3143 >seq16437 Length=3918 Score = 82.4 bits (90), Expect = 1e-12 Identities = 137/200 (69%), Gaps = 35/200 (18%) Strand=Plus/Plus Query 896 TCCTACCTTAGCTTATACTTATACTAT----ATTTCCATATAGCTTACAATGGCTATATT 951 ||| |||| |||||||| ||||||||| |||| | |||| || ||| ||| | Sbjct 1044 TCCAACCTCAGCTTATA-TTATACTATTATAATTTAC-TATACTTTT--ATGACTACGCT 1099 Query 952 TATAGCAATACATTCTTACCTATATAGCTAGCTttatatgctatatatacctctttaaga 1011 ||| |||||||| || |||||||||||| | ||| | |||| |||||||||||||| Sbjct 1100 TATTATAATACATTTCTAACTATATAGCTAGTTCTATTTCCTATTTATACCTCTTTAAG- 1158 Query 1012 aatataaaattattaaaagagttatatataaaataccacagccacga-aaataatataaa 1070 ||||||| ||||||||||| | |||| |||| | Sbjct 1159 -------------------------ATATAAATAACCACAGCCACAAGAAATCGTATAGA 1193 Query 1071 gctataGCAATTCTAGAATA 1090 |||||||||| ||||||||| Sbjct 1194 GCTATAGCAAATCTAGAATA 1213 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6545405179236