Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Operophtera_20brumata_20[genbank_20GCA_5F001266575.1_202015-08-11] 25,801 sequences; 638,207,720 total letters Query= NC_008852.1 Length=2094 Score E Sequences producing significant alignments: (Bits) Value seq6422 141 1e-30 seq9855 140 4e-30 seq2447 123 3e-25 seq7981 109 7e-21 seq6263 95.1 2e-16 seq3986 87.8 2e-14 seq1896 87.8 2e-14 seq16437 84.2 3e-13 >seq6422 Length=30189 Score = 141 bits (156), Expect = 1e-30 Identities = 163/209 (78%), Gaps = 13/209 (6%) Strand=Plus/Minus Query 439 TGGCGGCCACATTCTA-TCCTGAATTTATCATATAGCTTTATATTTCTTT--GTGGCTGT 495 |||| |||| |||||| | || | ||| |||| ||| |||||| || |||||||| Sbjct 21244 TGGCTGCCA-ATTCTAGTACTAGACTTACCATA--GCTCTATATTATTTCCCGTGGCTGT 21188 Query 496 GGTATTTTATATATAACTCTTTTAATAGTTTTAAATATCTTAAAGAGGTATAAATAGCAT 555 |||||||||||| ||||||||| ||| |||| |||||||||||||||||||||||||| Sbjct 21187 GGTATTTTATATGTAACTCTTTACATAAGTTTATATATCTTAAAGAGGTATAAATAGCAT 21128 Query 556 ATAGCATTAGCTATATAGCGAGGAAAATATT-ATTTAAAGCATAGCCATGAAAAGCtata 614 |||| || ||||| | ||| || || |||| | || ||||||||| ||||| |||| Sbjct 21127 ATAGTATAAGCTA-ACAGCTAGAAATGTATTGCTATAGGGCATAGCCAATAAAAGTTATA 21069 Query 615 tgagtataatata-tataaatataAGCTG 642 || | |||||| ||| | |||||||| Sbjct 21068 TG---AAAATATAGTAT-AGCATAAGCTG 21044 >seq9855 Length=15086 Score = 140 bits (154), Expect = 4e-30 Identities = 170/221 (77%), Gaps = 13/221 (6%) Strand=Plus/Minus Query 427 ATGTGGCGACTTTGGCGGCCACATTCTA-TCCTGAATTTATCATATAGCTTTATATTTCT 485 ||||||| | |||| |||| |||||| | || | ||| |||| ||| |||||| | Sbjct 3272 ATGTGGCAAACGTGGCTGCCA-ATTCTAGTACTAGACTTACCATA--GCTCTATATTATT 3216 Query 486 TT--GTGGCTGTGGTATTTTATATATAACTCTTTTAATAGTTTTAAATATCTTAAAGAGG 543 | |||||||||||||||||||| ||||||||| ||| |||| |||||||||||||| Sbjct 3215 TCCCGTGGCTGTGGTATTTTATATGTAACTCTTTACATAAGTTTATATATCTTAAAGAGG 3156 Query 544 TATAAATAGCATATAGCATTAGCTATATAGCGAGGAAAATATT-ATTTAAAGCATAGCCA 602 |||||||||||||||| | ||||| | ||| || || |||| | || ||||||||| Sbjct 3155 TATAAATAGCATATAGTGTAAGCTA-ACAGCTAGAAATGTATTGCTATAGGGCATAGCCA 3097 Query 603 TGAAAAGCtatatgagtataatata-tataaatataAGCTG 642 ||||| |||||| | |||||| ||| | |||||||| Sbjct 3096 ATAAAAGTTATATG---AAAATATAGTAT-AGCATAAGCTG 3060 >seq2447 Length=64305 Score = 123 bits (136), Expect = 3e-25 Identities = 132/169 (78%), Gaps = 8/169 (5%) Strand=Plus/Plus Query 439 TGGCGGCCACAT-TCTATCCTGAATTTATCATATAGCTTTATA---TTTCTTTGTGGCTG 494 |||||| | ||| ||||| || |||| ||||||| |||| |||||| ||||||| Sbjct 3129 TGGCGGAC-CATCTCTATTCTAGATTTGC--TATAGCTCTATACGATTTCTT-GTGGCTG 3184 Query 495 TGGTATTTTATATATAACTCTTTTAATAGTTTTAAATATCTTAAAGAGGTATAAATAGCA 554 |||| ||||||| |||||||| |||| |||| ||||||||||||||||||||||| | Sbjct 3185 TGGTTATTTATATCAAACTCTTTAAATAAGTTTATATATCTTAAAGAGGTATAAATAGGA 3244 Query 555 TATAGCATTAGCTATATAGCGAGGAAAATATTATTTAAAGCATAGCCAT 603 |||| | ||||||||||| || || |||||| |||| ||| ||| Sbjct 3245 AATAGAACTAGCTATATAGTTAGAAATGTATTATAATAAGCGTAGTCAT 3293 >seq7981 Length=21338 Score = 109 bits (120), Expect = 7e-21 Identities = 118/155 (76%), Gaps = 10/155 (6%) Strand=Plus/Minus Query 503 TATATA--TAACTCTTTTAAT----AGTTTTAAATATCTTAAAGAGGTATAAATAGCATA 556 |||||| ||||||||||||| | |||||||||| ||||||| || |||||| ||| Sbjct 10348 TATATACCTAACTCTTTTAATACCCAAGTTTAAATATCCTAAAGAGATAGAAATAGGATA 10289 Query 557 TAGCATTAGCTATA----TAGCGAGGAAAATATTATTTAAAGCATAGCCATGAAAAGCta 612 | | |||||||||| | || || || ||| | | || | |||||| | |||||||| Sbjct 10288 TGGTATTAGCTATAGGTGTGGCTAGAAAGGTATAACTAAAGGTATAGCCGTTAAAAGCTA 10229 Query 613 tatgagtataatatatataaatataAGCTGTGATG 647 || || |||| | ||||||||||| |||||||| Sbjct 10228 TAGGAATATATGGTGTATAAATATAAACTGTGATG 10194 >seq6263 Length=31128 Score = 95.1 bits (104), Expect = 2e-16 Identities = 92/118 (78%), Gaps = 4/118 (3%) Strand=Plus/Plus Query 534 CTTAAAGAGGTATAAATAGCATATAGCATTAGCTATATAGCGAGGAAAATATTATTTAAA 593 ||||||||| ||||||||| |||| | ||||||||||| || || || ||| | || Sbjct 12660 CTTAAAGAGATATAAATAGGATATGGTATTAGCTATATGGCTAGAAAGGTATAGCTAAAG 12719 Query 594 GCA----TAGCCATGAAAAGCtatatgagtataatatatataaatataAGCTGTGATG 647 | | ||||| | |||||||||| || |||| |||||||||||||||||||||| Sbjct 12720 GTATAGGTAGCCGTTAAAAGCTATACGAATATATAGTATATAAATATAAGCTGTGATG 12777 >seq3986 Length=47825 Score = 87.8 bits (96), Expect = 2e-14 Identities = 118/164 (72%), Gaps = 19/164 (12%) Strand=Plus/Minus Query 503 TATATA--TAACTCTTTTAATAGT--------TTTAAATATCTTAAAGAGGTATAAATAG 552 |||||| |||||||||||||| | |||||||||| | ||||| || | |||| Sbjct 17833 TATATACCTAACTCTTTTAATACTTACCTAAGTTTAAATATCCTCAAGAGATAGATATAG 17774 Query 553 CATATAGCATTAGCTA-----TATAGCGAGGAAAATATTATTTAAAGCATAGCCATGAAA 607 |||| | |||||||| | | || || || ||| | | || | |||||| | ||| Sbjct 17773 GATATGGTATTAGCTATTAGGTGTGGCTAGAAAGGTATAACTAAAGGTATAGCCGTTAAA 17714 Query 608 AGCtatatgagtata----atatatataaatataAGCTGTGATG 647 ||||||| || |||| | ||||||||||||| |||||||| Sbjct 17713 AGCTATACGAATATATACTAGGTATATAAATATAAACTGTGATG 17670 >seq1896 Length=105120 Score = 87.8 bits (96), Expect = 2e-14 Identities = 96/123 (78%), Gaps = 10/123 (8%) Strand=Plus/Minus Query 450 TTCTATCCTGAATTTATCATATAGCTTTATAT--TTCTTTGTGGCTGTGGTATTTTATA- 506 ||||||||| ||||| ||||||||||||| || ||||||||||||||||||||| Sbjct 45771 TTCTATCCTAGATTTAC--TATAGCTTTATATAATTTCTTGTGGCTGTGGTATTTTATAG 45714 Query 507 TATAACTCTTTTAATAGTTTTAAATATCTTAAAGAGGTATAAATA-GCATATAGCATTAG 565 | ||| | ||| ||| || ||||||| ||| || ||||||| | ||||||| ||| Sbjct 45713 TTTAAATAATTTTATACTT----ATATCTTGAAGGGGAATAAATAGGGTTATAGCACTAG 45658 Query 566 CTA 568 ||| Sbjct 45657 CTA 45655 >seq16437 Length=3918 Score = 84.2 bits (92), Expect = 3e-13 Identities = 105/138 (76%), Gaps = 6/138 (4%) Strand=Plus/Minus Query 530 ATATCTTAAAGAGGTATAAATAGCATATAGCATTAGCTATATAGCGAGGAAAATATTATT 589 ||||||||||||||||||||||| | |||| | ||||||||||| || || |||||| Sbjct 1162 ATATCTTAAAGAGGTATAAATAGGAAATAGAACTAGCTATATAGTTAGAAATGTATTATA 1103 Query 590 TAAAGCATAGCCATGAAAAGCtata--tgagtataatatatataaatataAGCTGTGATG 647 |||| ||| ||| ||||| |||| | ||||||| ||| ||||||||||| | | Sbjct 1102 ATAAGCGTAGTCAT-AAAAG-TATAGTAAATTATAATA-GTAT-AATATAAGCTGAGGTT 1047 Query 648 GCATAGCAATTACCCGCC 665 | | | | |||||||| Sbjct 1046 GGACTGGATATACCCGCC 1029 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6590192897960