Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Operophtera_20brumata_20[genbank_20GCA_5F001266575.1_202015-08-11]
25,801 sequences; 638,207,720 total letters
Query= NC_008853.1
Length=2135
Score E
Sequences producing significant alignments: (Bits) Value
seq6422 206 4e-50
seq9855 203 4e-49
seq2447 163 4e-37
seq16437 100 4e-18
seq1896 87.8 2e-14
>seq6422
Length=30189
Score = 206 bits (228), Expect = 4e-50
Identities = 191/237 (81%), Gaps = 4/237 (2%)
Strand=Plus/Minus
Query 1234 TGGCTGGTCATTTTCATTCTAGATTTTCTATAGCTCTATACGTTTTTCCGTGGCTGTGGT 1293
|||||| ||| | | ||||| || | ||||||||||| ||| |||||||||||||
Sbjct 21244 TGGCTGCCAATTCTAGTACTAGACTTACCATAGCTCTATATTATTTCCCGTGGCTGTGGT 21185
Query 1294 ATTTTATATATAACTCTTTACATAAGTTTATATATCTTAAAGAGGTATAAATAGCATGTA 1353
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 21184 ATTTTATATGTAACTCTTTACATAAGTTTATATATCTTAAAGAGGTATAAATAGCATATA 21125
Query 1354 GGACTAGCTATAGAGTTAGTAGTGTATTGCTGTA-TGTAAGGTCTCTAGAGGCTATGTAA 1412
| | ||||| | || ||| | ||||||||| || | | | | || | | ||| | |
Sbjct 21124 GTATAAGCTA-ACAGCTAGAAATGTATTGCTATAGGGCATAGCCAATAAAAGTTATATGA 21066
Query 1413 AAATATAGTATAAGCATAAGCTGAGGTGGGACTGAAAATGGCAGCCACACCCGCCAC 1469
||||||||||| |||||||||||||||| || ||| ||| ||||||||||||||
Sbjct 21065 AAATATAGTAT-AGCATAAGCTGAGGTGAGA-TGATCTGGGCTGCCACACCCGCCAC 21011
>seq9855
Length=15086
Score = 203 bits (224), Expect = 4e-49
Identities = 197/248 (79%), Gaps = 4/248 (2%)
Strand=Plus/Minus
Query 1223 TGTGGCTGATATGGCTGGTCATTTTCATTCTAGATTTTCTATAGCTCTATACGTTTTTCC 1282
|||||| | |||||| ||| | | ||||| || | ||||||||||| ||| ||
Sbjct 3271 TGTGGCAAACGTGGCTGCCAATTCTAGTACTAGACTTACCATAGCTCTATATTATTTCCC 3212
Query 1283 GTGGCTGTGGTATTTTATATATAACTCTTTACATAAGTTTATATATCTTAAAGAGGTATA 1342
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 3211 GTGGCTGTGGTATTTTATATGTAACTCTTTACATAAGTTTATATATCTTAAAGAGGTATA 3152
Query 1343 AATAGCATGTAGGACTAGCTATAGAGTTAGTAGTGTATTGCTGTA-TGTAAGGTCTCTAG 1401
|||||||| ||| ||||| | || ||| | ||||||||| || | | | | ||
Sbjct 3151 AATAGCATATAGTGTAAGCTA-ACAGCTAGAAATGTATTGCTATAGGGCATAGCCAATAA 3093
Query 1402 AGGCTATGTAAAAATATAGTATAAGCATAAGCTGAGGTGGGACTGAAAATGGCAGCCACA 1461
| | ||| | |||||||||||| |||||||||||||||| || ||| ||| ||||||
Sbjct 3092 AAGTTATATGAAAATATAGTAT-AGCATAAGCTGAGGTGTGA-TGATCTGGGCTGCCACA 3035
Query 1462 CCCGCCAC 1469
||||||||
Sbjct 3034 CCCGCCAC 3027
>seq2447
Length=64305
Score = 163 bits (180), Expect = 4e-37
Identities = 116/133 (87%), Gaps = 0/133 (0%)
Strand=Plus/Plus
Query 1249 ATTCTAGATTTTCTATAGCTCTATACGTTTTTCCGTGGCTGTGGTATTTTATATATAACT 1308
||||||||||| ||||||||||||||| ||| ||||||||||| ||||||| ||||
Sbjct 3144 ATTCTAGATTTGCTATAGCTCTATACGATTTCTTGTGGCTGTGGTTATTTATATCAAACT 3203
Query 1309 CTTTACATAAGTTTATATATCTTAAAGAGGTATAAATAGCATGTAGGACTAGCTATAGAG 1368
||||| ||||||||||||||||||||||||||||||||| | ||| |||||||||| ||
Sbjct 3204 CTTTAAATAAGTTTATATATCTTAAAGAGGTATAAATAGGAAATAGAACTAGCTATATAG 3263
Query 1369 TTAGTAGTGTATT 1381
|||| | ||||||
Sbjct 3264 TTAGAAATGTATT 3276
>seq16437
Length=3918
Score = 100 bits (110), Expect = 4e-18
Identities = 192/287 (67%), Gaps = 51/287 (18%)
Strand=Plus/Minus
Query 1249 ATTCTAGATTTTCTATAGCTCTATACGTTTTTCCGTGGCTGTGGTATTTTATATATAACT 1308
||||||||||| ||||||||||||||| ||| ||||||||||| |||||||
Sbjct 1212 ATTCTAGATTTGCTATAGCTCTATACGATTTCTTGTGGCTGTGGTTATTTATAT------ 1159
Query 1309 CTTTACATAAGTTTATATATCTTAAAGAGGTATAAATAGCATGTAGGACTAGCTATAGAG 1368
||||||||||||||||||| | ||| |||||||||| ||
Sbjct 1158 --------------------CTTAAAGAGGTATAAATAGGAAATAGAACTAGCTATATAG 1119
Query 1369 TTAGTAGTGTATTGCTGTATGTAAGGTCTCTAGAGGCTATGTAAA--AATATAGTATAAG 1426
|||| | |||||| || | ||| | || || ||||| | |||||||||
Sbjct 1118 TTAGAAATGTATTATAATAAGCGTAGTCATAAAAGTATA-GTAAATTATAATAGTATAA- 1061
Query 1427 CATAAGCTGAGGTGGGACTGAAAATGGCAGCCACACCCGCCACACCGCAACTCGGCTGCT 1486
|||||||||||| |||||| | || ||||||| ||| ||||
Sbjct 1060 TATAAGCTGAGGTTGGACTGGATAT---------ACCCGCC-CAC----------CTGC- 1022
Query 1487 TAACCTGAGTATTTCGAGATGATCGAGGGCTCGTTGGATTCGTCTCG 1533
|| | || ||||||||||| ||| ||||||||| ||||||||||
Sbjct 1021 TACACGCAGACTTTCGAGATGAACGAAGGCTCGTTGAATTCGTCTCG 975
>seq1896
Length=105120
Score = 87.8 bits (96), Expect = 2e-14
Identities = 122/170 (72%), Gaps = 17/170 (10%)
Strand=Plus/Minus
Query 1223 TGTGGCTGATATGGCTGGTCATTTTCATTCTAGATTTTCTATAGCTCTATACGTTTTTCC 1282
||||||| ||| | |||||| || |||||||| |||||||| |||| |||
Sbjct 45788 TGTGGCTAATA-----GATCATTTCTATCCTAGATTTACTATAGCTTTATATAATTTCTT 45734
Query 1283 GTGGCTGTGGTATTTTATATATAACTCTTTACATAAGTTTA----TATATCTTAAAGAGG 1338
||||||||||||||||||| |||| |||| |||| |||||||| ||| ||
Sbjct 45733 GTGGCTGTGGTATTTTATA-------GTTTAAATAATTTTATACTTATATCTTGAAGGGG 45681
Query 1339 TATAAATA-GCATGTAGGACTAGCTATAGAGTTAGTAGTGTATTGCTGTA 1387
||||||| | | ||| |||||||| ||| || || | |||||| ||
Sbjct 45680 AATAAATAGGGTTATAGCACTAGCTAGAGACCTAATAATAAATTGCTATA 45631
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 6721356931366
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |