Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Operophtera_20brumata_20[genbank_20GCA_5F001266575.1_202015-08-11] 25,801 sequences; 638,207,720 total letters Query= NC_008853.1 Length=2135 Score E Sequences producing significant alignments: (Bits) Value seq6422 206 4e-50 seq9855 203 4e-49 seq2447 163 4e-37 seq16437 100 4e-18 seq1896 87.8 2e-14 >seq6422 Length=30189 Score = 206 bits (228), Expect = 4e-50 Identities = 191/237 (81%), Gaps = 4/237 (2%) Strand=Plus/Minus Query 1234 TGGCTGGTCATTTTCATTCTAGATTTTCTATAGCTCTATACGTTTTTCCGTGGCTGTGGT 1293 |||||| ||| | | ||||| || | ||||||||||| ||| ||||||||||||| Sbjct 21244 TGGCTGCCAATTCTAGTACTAGACTTACCATAGCTCTATATTATTTCCCGTGGCTGTGGT 21185 Query 1294 ATTTTATATATAACTCTTTACATAAGTTTATATATCTTAAAGAGGTATAAATAGCATGTA 1353 ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 21184 ATTTTATATGTAACTCTTTACATAAGTTTATATATCTTAAAGAGGTATAAATAGCATATA 21125 Query 1354 GGACTAGCTATAGAGTTAGTAGTGTATTGCTGTA-TGTAAGGTCTCTAGAGGCTATGTAA 1412 | | ||||| | || ||| | ||||||||| || | | | | || | | ||| | | Sbjct 21124 GTATAAGCTA-ACAGCTAGAAATGTATTGCTATAGGGCATAGCCAATAAAAGTTATATGA 21066 Query 1413 AAATATAGTATAAGCATAAGCTGAGGTGGGACTGAAAATGGCAGCCACACCCGCCAC 1469 ||||||||||| |||||||||||||||| || ||| ||| |||||||||||||| Sbjct 21065 AAATATAGTAT-AGCATAAGCTGAGGTGAGA-TGATCTGGGCTGCCACACCCGCCAC 21011 >seq9855 Length=15086 Score = 203 bits (224), Expect = 4e-49 Identities = 197/248 (79%), Gaps = 4/248 (2%) Strand=Plus/Minus Query 1223 TGTGGCTGATATGGCTGGTCATTTTCATTCTAGATTTTCTATAGCTCTATACGTTTTTCC 1282 |||||| | |||||| ||| | | ||||| || | ||||||||||| ||| || Sbjct 3271 TGTGGCAAACGTGGCTGCCAATTCTAGTACTAGACTTACCATAGCTCTATATTATTTCCC 3212 Query 1283 GTGGCTGTGGTATTTTATATATAACTCTTTACATAAGTTTATATATCTTAAAGAGGTATA 1342 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 3211 GTGGCTGTGGTATTTTATATGTAACTCTTTACATAAGTTTATATATCTTAAAGAGGTATA 3152 Query 1343 AATAGCATGTAGGACTAGCTATAGAGTTAGTAGTGTATTGCTGTA-TGTAAGGTCTCTAG 1401 |||||||| ||| ||||| | || ||| | ||||||||| || | | | | || Sbjct 3151 AATAGCATATAGTGTAAGCTA-ACAGCTAGAAATGTATTGCTATAGGGCATAGCCAATAA 3093 Query 1402 AGGCTATGTAAAAATATAGTATAAGCATAAGCTGAGGTGGGACTGAAAATGGCAGCCACA 1461 | | ||| | |||||||||||| |||||||||||||||| || ||| ||| |||||| Sbjct 3092 AAGTTATATGAAAATATAGTAT-AGCATAAGCTGAGGTGTGA-TGATCTGGGCTGCCACA 3035 Query 1462 CCCGCCAC 1469 |||||||| Sbjct 3034 CCCGCCAC 3027 >seq2447 Length=64305 Score = 163 bits (180), Expect = 4e-37 Identities = 116/133 (87%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 1249 ATTCTAGATTTTCTATAGCTCTATACGTTTTTCCGTGGCTGTGGTATTTTATATATAACT 1308 ||||||||||| ||||||||||||||| ||| ||||||||||| ||||||| |||| Sbjct 3144 ATTCTAGATTTGCTATAGCTCTATACGATTTCTTGTGGCTGTGGTTATTTATATCAAACT 3203 Query 1309 CTTTACATAAGTTTATATATCTTAAAGAGGTATAAATAGCATGTAGGACTAGCTATAGAG 1368 ||||| ||||||||||||||||||||||||||||||||| | ||| |||||||||| || Sbjct 3204 CTTTAAATAAGTTTATATATCTTAAAGAGGTATAAATAGGAAATAGAACTAGCTATATAG 3263 Query 1369 TTAGTAGTGTATT 1381 |||| | |||||| Sbjct 3264 TTAGAAATGTATT 3276 >seq16437 Length=3918 Score = 100 bits (110), Expect = 4e-18 Identities = 192/287 (67%), Gaps = 51/287 (18%) Strand=Plus/Minus Query 1249 ATTCTAGATTTTCTATAGCTCTATACGTTTTTCCGTGGCTGTGGTATTTTATATATAACT 1308 ||||||||||| ||||||||||||||| ||| ||||||||||| ||||||| Sbjct 1212 ATTCTAGATTTGCTATAGCTCTATACGATTTCTTGTGGCTGTGGTTATTTATAT------ 1159 Query 1309 CTTTACATAAGTTTATATATCTTAAAGAGGTATAAATAGCATGTAGGACTAGCTATAGAG 1368 ||||||||||||||||||| | ||| |||||||||| || Sbjct 1158 --------------------CTTAAAGAGGTATAAATAGGAAATAGAACTAGCTATATAG 1119 Query 1369 TTAGTAGTGTATTGCTGTATGTAAGGTCTCTAGAGGCTATGTAAA--AATATAGTATAAG 1426 |||| | |||||| || | ||| | || || ||||| | ||||||||| Sbjct 1118 TTAGAAATGTATTATAATAAGCGTAGTCATAAAAGTATA-GTAAATTATAATAGTATAA- 1061 Query 1427 CATAAGCTGAGGTGGGACTGAAAATGGCAGCCACACCCGCCACACCGCAACTCGGCTGCT 1486 |||||||||||| |||||| | || ||||||| ||| |||| Sbjct 1060 TATAAGCTGAGGTTGGACTGGATAT---------ACCCGCC-CAC----------CTGC- 1022 Query 1487 TAACCTGAGTATTTCGAGATGATCGAGGGCTCGTTGGATTCGTCTCG 1533 || | || ||||||||||| ||| ||||||||| |||||||||| Sbjct 1021 TACACGCAGACTTTCGAGATGAACGAAGGCTCGTTGAATTCGTCTCG 975 >seq1896 Length=105120 Score = 87.8 bits (96), Expect = 2e-14 Identities = 122/170 (72%), Gaps = 17/170 (10%) Strand=Plus/Minus Query 1223 TGTGGCTGATATGGCTGGTCATTTTCATTCTAGATTTTCTATAGCTCTATACGTTTTTCC 1282 ||||||| ||| | |||||| || |||||||| |||||||| |||| ||| Sbjct 45788 TGTGGCTAATA-----GATCATTTCTATCCTAGATTTACTATAGCTTTATATAATTTCTT 45734 Query 1283 GTGGCTGTGGTATTTTATATATAACTCTTTACATAAGTTTA----TATATCTTAAAGAGG 1338 ||||||||||||||||||| |||| |||| |||| |||||||| ||| || Sbjct 45733 GTGGCTGTGGTATTTTATA-------GTTTAAATAATTTTATACTTATATCTTGAAGGGG 45681 Query 1339 TATAAATA-GCATGTAGGACTAGCTATAGAGTTAGTAGTGTATTGCTGTA 1387 ||||||| | | ||| |||||||| ||| || || | |||||| || Sbjct 45680 AATAAATAGGGTTATAGCACTAGCTAGAGACCTAATAATAAATTGCTATA 45631 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6721356931366