Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Operophtera_20brumata_20[genbank_20GCA_5F001266575.1_202015-08-11]
25,801 sequences; 638,207,720 total letters
Query= NC_008854.1
Length=2177
Score E
Sequences producing significant alignments: (Bits) Value
seq6422 156 6e-35
seq2447 152 7e-34
seq9855 150 2e-33
>seq6422
Length=30189
Score = 156 bits (172), Expect = 6e-35
Identities = 233/323 (72%), Gaps = 27/323 (8%)
Strand=Plus/Plus
Query 854 ATTAGGCTTGTCAGATTTATCTGAACGTGACGAATCCAACGAGCCCACGTTCATTTATTA 913
|||||||| || |||| || | ||||||||||||| | ||| | || | |
Sbjct 20920 ATTAGGCTCATCGGATTCCTCGCGTCAAGACGAATCCAACGGGTCCATGGTCGACCAAAA 20979
Query 914 ATTTTAACTTTAAGTGCCTGGTTGGCAAT--GTGGCGAGTGTGGCGGGTTTTTCCCAG-- 969
|| ||| |||| || | |||| ||| |||||| ||||||| | |||||
Sbjct 20980 ATGGCTACTGGAAGTCCCCGATTGGAAATTGGTGGCGGGTGTGGCAG------CCCAGAT 21033
Query 970 --TCTCACCATAGCttatatttatattatactattatttatactatagttccattggcta 1027
||||||| ||||||| | ||| |||| | | || || | || ||||||||
Sbjct 21034 CATCTCACCTCAGCTTATGCT-ATACTATATTTTCATATA------ACTTTTATTGGCTA 21086
Query 1028 taac-tata----tatatttctagctctatagctagtcctatatttctatttatacctct 1082
| | |||| || |||||||||| | ||||| | |||||| ||||||||||||||
Sbjct 21087 TGCCCTATAGCAATACATTTCTAGCTGT-TAGCTTATACTATATG-CTATTTATACCTCT 21144
Query 1083 tttagatatataAACTTATTTAAAGAGTTACATATAAACTAACACAGCCACGGATAAATC 1142
|| |||||||||||||||| |||||||||||||||||| || ||||||||||| ||||
Sbjct 21145 TTAAGATATATAAACTTATGTAAAGAGTTACATATAAAATACCACAGCCACGG-GAAATA 21203
Query 1143 GTATTAAGCTATGATAAGTCTAG 1165
||| ||||||| |||||||||
Sbjct 21204 ATATAGAGCTATGGTAAGTCTAG 21226
>seq2447
Length=64305
Score = 152 bits (168), Expect = 7e-34
Identities = 149/185 (81%), Gaps = 8/185 (4%)
Strand=Plus/Minus
Query 991 tattatactattatt-tatactatagttccattggcta---taactata-tatatttcta 1045
|||||||||||||| | ||||||| || || | ||| | | |||| || |||||||
Sbjct 3323 TATTATACTATTATAATTTACTATACTTATAT-GACTACGCTTATTATAATACATTTCTA 3265
Query 1046 gctctatagctagtcctatatttctatttatacctcttttagatatataAACTTATTTAA 1105
|| |||||||||| |||| || |||||||||||||||| ||||||||||||||||||||
Sbjct 3264 ACTATATAGCTAGTTCTAT-TTCCTATTTATACCTCTTTAAGATATATAAACTTATTTAA 3206
Query 1106 AGAGTTACATATAAACTAACACAGCCACGGATAAATCGTATTAAGCTATGATAAGTCTAG 1165
|||||| ||||||| | ||||||||| | ||||||||| |||||| || |||||
Sbjct 3205 AGAGTTTGATATAAATAACCACAGCCAC-AAGAAATCGTATAGAGCTATAGCAAATCTAG 3147
Query 1166 GATAG 1170
||||
Sbjct 3146 AATAG 3142
>seq9855
Length=15086
Score = 150 bits (166), Expect = 2e-33
Identities = 252/350 (72%), Gaps = 22/350 (6%)
Strand=Plus/Plus
Query 854 ATTAGGCTTGTCAGATTTATCTGAACGTGACGAATCCAACGAGCCCACGTTCATTTATTA 913
|||||||| || |||| || | ||||||||||||| | ||| | || | |
Sbjct 2936 ATTAGGCTCATCGGATTCCTCGCGTCAAGACGAATCCAACGGGTCCATGGTCGACCAAAA 2995
Query 914 ATTTTAACTTTAAGTGCCTGGTTGGCAAT--GTGGCGAGTGTGGCGGGTTTTTCCCAGTC 971
|| ||| |||| || | |||| ||| |||||| ||||||| | |||||
Sbjct 2996 ATGGCTACTGGAAGTCCCCGATTGGAAATTGGTGGCGGGTGTGGCAG------CCCAGA- 3048
Query 972 TCACCATAGCttatatttatattatactattattt-atactatagttccattggctataa 1030
||| || | || | || || |||||||| ||| ||| || | || |||||||||
Sbjct 3049 TCATCACACCTCAGCTT-ATGCTATACTATATTTTCATA-TA-ACTTTTATTGGCTATGC 3105
Query 1031 c-tata----tatatttctagctctatagctagtcctatatttctatttatacctctttt 1085
| |||| || |||||||||| | ||||| |||||| ||||||||||||||||
Sbjct 3106 CCTATAGCAATACATTTCTAGCTGT-TAGCTTACACTATATG-CTATTTATACCTCTTTA 3163
Query 1086 agatatataAACTTATTTAAAGAGTTACATATAAACTAACACAGCCACGGATAAATCGTA 1145
|||||||||||||||| |||||||||||||||||| || ||||||||||| |||| ||
Sbjct 3164 AGATATATAAACTTATGTAAAGAGTTACATATAAAATACCACAGCCACGG-GAAATAATA 3222
Query 1146 TTAAGCTATGATAAGTCTAGGATAGGAATATGTCTGCCAAACGTGCCACA 1195
| ||||||| ||||||||| | |||| || | |||| |||||||
Sbjct 3223 TAGAGCTATGGTAAGTCTAGTACTAGAAT-TGGCAGCCACGTTTGCCACA 3271
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 6855720087538
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |