Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Operophtera_20brumata_20[genbank_20GCA_5F001266575.1_202015-08-11] 25,801 sequences; 638,207,720 total letters Query= NC_008854.1 Length=2177 Score E Sequences producing significant alignments: (Bits) Value seq6422 156 6e-35 seq2447 152 7e-34 seq9855 150 2e-33 >seq6422 Length=30189 Score = 156 bits (172), Expect = 6e-35 Identities = 233/323 (72%), Gaps = 27/323 (8%) Strand=Plus/Plus Query 854 ATTAGGCTTGTCAGATTTATCTGAACGTGACGAATCCAACGAGCCCACGTTCATTTATTA 913 |||||||| || |||| || | ||||||||||||| | ||| | || | | Sbjct 20920 ATTAGGCTCATCGGATTCCTCGCGTCAAGACGAATCCAACGGGTCCATGGTCGACCAAAA 20979 Query 914 ATTTTAACTTTAAGTGCCTGGTTGGCAAT--GTGGCGAGTGTGGCGGGTTTTTCCCAG-- 969 || ||| |||| || | |||| ||| |||||| ||||||| | ||||| Sbjct 20980 ATGGCTACTGGAAGTCCCCGATTGGAAATTGGTGGCGGGTGTGGCAG------CCCAGAT 21033 Query 970 --TCTCACCATAGCttatatttatattatactattatttatactatagttccattggcta 1027 ||||||| ||||||| | ||| |||| | | || || | || |||||||| Sbjct 21034 CATCTCACCTCAGCTTATGCT-ATACTATATTTTCATATA------ACTTTTATTGGCTA 21086 Query 1028 taac-tata----tatatttctagctctatagctagtcctatatttctatttatacctct 1082 | | |||| || |||||||||| | ||||| | |||||| |||||||||||||| Sbjct 21087 TGCCCTATAGCAATACATTTCTAGCTGT-TAGCTTATACTATATG-CTATTTATACCTCT 21144 Query 1083 tttagatatataAACTTATTTAAAGAGTTACATATAAACTAACACAGCCACGGATAAATC 1142 || |||||||||||||||| |||||||||||||||||| || ||||||||||| |||| Sbjct 21145 TTAAGATATATAAACTTATGTAAAGAGTTACATATAAAATACCACAGCCACGG-GAAATA 21203 Query 1143 GTATTAAGCTATGATAAGTCTAG 1165 ||| ||||||| ||||||||| Sbjct 21204 ATATAGAGCTATGGTAAGTCTAG 21226 >seq2447 Length=64305 Score = 152 bits (168), Expect = 7e-34 Identities = 149/185 (81%), Gaps = 8/185 (4%) Strand=Plus/Minus Query 991 tattatactattatt-tatactatagttccattggcta---taactata-tatatttcta 1045 |||||||||||||| | ||||||| || || | ||| | | |||| || ||||||| Sbjct 3323 TATTATACTATTATAATTTACTATACTTATAT-GACTACGCTTATTATAATACATTTCTA 3265 Query 1046 gctctatagctagtcctatatttctatttatacctcttttagatatataAACTTATTTAA 1105 || |||||||||| |||| || |||||||||||||||| |||||||||||||||||||| Sbjct 3264 ACTATATAGCTAGTTCTAT-TTCCTATTTATACCTCTTTAAGATATATAAACTTATTTAA 3206 Query 1106 AGAGTTACATATAAACTAACACAGCCACGGATAAATCGTATTAAGCTATGATAAGTCTAG 1165 |||||| ||||||| | ||||||||| | ||||||||| |||||| || ||||| Sbjct 3205 AGAGTTTGATATAAATAACCACAGCCAC-AAGAAATCGTATAGAGCTATAGCAAATCTAG 3147 Query 1166 GATAG 1170 |||| Sbjct 3146 AATAG 3142 >seq9855 Length=15086 Score = 150 bits (166), Expect = 2e-33 Identities = 252/350 (72%), Gaps = 22/350 (6%) Strand=Plus/Plus Query 854 ATTAGGCTTGTCAGATTTATCTGAACGTGACGAATCCAACGAGCCCACGTTCATTTATTA 913 |||||||| || |||| || | ||||||||||||| | ||| | || | | Sbjct 2936 ATTAGGCTCATCGGATTCCTCGCGTCAAGACGAATCCAACGGGTCCATGGTCGACCAAAA 2995 Query 914 ATTTTAACTTTAAGTGCCTGGTTGGCAAT--GTGGCGAGTGTGGCGGGTTTTTCCCAGTC 971 || ||| |||| || | |||| ||| |||||| ||||||| | ||||| Sbjct 2996 ATGGCTACTGGAAGTCCCCGATTGGAAATTGGTGGCGGGTGTGGCAG------CCCAGA- 3048 Query 972 TCACCATAGCttatatttatattatactattattt-atactatagttccattggctataa 1030 ||| || | || | || || |||||||| ||| ||| || | || ||||||||| Sbjct 3049 TCATCACACCTCAGCTT-ATGCTATACTATATTTTCATA-TA-ACTTTTATTGGCTATGC 3105 Query 1031 c-tata----tatatttctagctctatagctagtcctatatttctatttatacctctttt 1085 | |||| || |||||||||| | ||||| |||||| |||||||||||||||| Sbjct 3106 CCTATAGCAATACATTTCTAGCTGT-TAGCTTACACTATATG-CTATTTATACCTCTTTA 3163 Query 1086 agatatataAACTTATTTAAAGAGTTACATATAAACTAACACAGCCACGGATAAATCGTA 1145 |||||||||||||||| |||||||||||||||||| || ||||||||||| |||| || Sbjct 3164 AGATATATAAACTTATGTAAAGAGTTACATATAAAATACCACAGCCACGG-GAAATAATA 3222 Query 1146 TTAAGCTATGATAAGTCTAGGATAGGAATATGTCTGCCAAACGTGCCACA 1195 | ||||||| ||||||||| | |||| || | |||| ||||||| Sbjct 3223 TAGAGCTATGGTAAGTCTAGTACTAGAAT-TGGCAGCCACGTTTGCCACA 3271 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6855720087538