Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Operophtera_20brumata_20[genbank_20GCA_5F001266575.1_202015-08-11] 25,801 sequences; 638,207,720 total letters Query= NC_008856.1 Length=2195 Score E Sequences producing significant alignments: (Bits) Value seq6422 107 3e-20 seq9855 104 3e-19 seq2447 102 1e-18 >seq6422 Length=30189 Score = 107 bits (118), Expect = 3e-20 Identities = 164/234 (70%), Gaps = 8/234 (3%) Strand=Plus/Plus Query 16 GTGGCGGATGTGGCAGCCATTACCAGTCT-ATCTCGGCTTATGCCTATATACGTAATAAT 74 ||||||| |||||||||| | || ||| | ||| |||||||| ||||| || | Sbjct 21011 GTGGCGGGTGTGGCAGCCCAGATCA-TCTCACCTCAGCTTATGC---TATACTATATTTT 21066 Query 75 CATATAGCCTTTAACGGCTATGCC-TATAGCTATATATTTNNNNNNNNNNNNNNNNNNNN 133 |||||| | |||| ||||||||| |||||| ||| |||| Sbjct 21067 CATATAACTTTTATTGGCTATGCCCTATAGCAATACATTTCTAGCTGTTAGCTTATACTA 21126 Query 134 NNNTTATATTTATACCTCTTTAAGAAATATTATATTCTTTAAAGAGTTATTAATAAAAGA 193 | ||||||||||||||||||| |||| | || | |||||||||| |||||| | Sbjct 21127 TA-TGCTATTTATACCTCTTTAAGATATATAAACTTATGTAAAGAGTTACATATAAAATA 21185 Query 194 CCACAGCCACGTGAAATACTATAGATTTATATTAAATCTAGGA-TAGAGATGGC 246 ||||||||||| |||||| |||||| ||| ||| ||||| | |||| |||| Sbjct 21186 CCACAGCCACGGGAAATAATATAGAGCTATGGTAAGTCTAGTACTAGAATTGGC 21239 >seq9855 Length=15086 Score = 104 bits (114), Expect = 3e-19 Identities = 161/233 (69%), Gaps = 6/233 (3%) Strand=Plus/Plus Query 16 GTGGCGGATGTGGCAGCCATTACCAGTCTATCTCGGCTTATGCCTATATACGTAATAATC 75 ||||||| |||||||||| | || | ||| |||||||| ||||| || || Sbjct 3027 GTGGCGGGTGTGGCAGCCCAGATCATCACACCTCAGCTTATGC---TATACTATATTTTC 3083 Query 76 ATATAGCCTTTAACGGCTATGCC-TATAGCTATATATTTNNNNNNNNNNNNNNNNNNNNN 134 ||||| | |||| ||||||||| |||||| ||| |||| Sbjct 3084 ATATAACTTTTATTGGCTATGCCCTATAGCAATACATTTCTAGCTGTTAGCTTACACTAT 3143 Query 135 NNTTATATTTATACCTCTTTAAGAAATATTATATTCTTTAAAGAGTTATTAATAAAAGAC 194 | ||||||||||||||||||| |||| | || | |||||||||| |||||| || Sbjct 3144 A-TGCTATTTATACCTCTTTAAGATATATAAACTTATGTAAAGAGTTACATATAAAATAC 3202 Query 195 CACAGCCACGTGAAATACTATAGATTTATATTAAATCTAGGA-TAGAGATGGC 246 |||||||||| |||||| |||||| ||| ||| ||||| | |||| |||| Sbjct 3203 CACAGCCACGGGAAATAATATAGAGCTATGGTAAGTCTAGTACTAGAATTGGC 3255 >seq2447 Length=64305 Score = 102 bits (112), Expect = 1e-18 Identities = 86/106 (81%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 140 TATTTATACCTCTTTAAGAAATATTATATTCTTTAAAGAGTTATTAATAAAAGACCACAG 199 ||||||||||||||||||| |||| | || ||||||||||| ||||| ||||||| Sbjct 3241 TATTTATACCTCTTTAAGATATATAAACTTATTTAAAGAGTTTGATATAAATAACCACAG 3182 Query 200 CCACGTGAAATACTATAGATTTATATTAAATCTAGGATAGAGATGG 245 |||| ||||| |||||| |||| |||||||| |||||||||| Sbjct 3181 CCACAAGAAATCGTATAGAGCTATAGCAAATCTAGAATAGAGATGG 3136 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6913304297326