Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Operophtera_20brumata_20[genbank_20GCA_5F001266575.1_202015-08-11] 25,801 sequences; 638,207,720 total letters Query= NC_008857.1 Length=2199 Score E Sequences producing significant alignments: (Bits) Value seq9855 161 1e-36 seq6422 161 1e-36 >seq9855 Length=15086 Score = 161 bits (178), Expect = 1e-36 Identities = 247/354 (70%), Gaps = 29/354 (8%) Strand=Plus/Plus Query 1229 ATTGGATTCTCCTCGTTGAGACATTTTCAACGAGTCCATGTCCGACTCAAAATGGCCGCG 1288 || |||||| | ||| |||| | ||||| ||||||| |||| |||||||| | Sbjct 2945 ATCGGATTCCTCGCGTCAAGACGAATCCAACGGGTCCATGGTCGACCAAAAATGGCTACT 3004 Query 1289 CCAAGTGCCCATTTGGCGAT--GTGGCGGGTGTGGCGGGTTTTTTCCAATCCCACCTTAG 1346 |||| ||| |||| || |||||||||||||| | || ||| ||||| || Sbjct 3005 GGAAGTCCCCGATTGGAAATTGGTGGCGGGTGTGGCAGCCCAGATC--ATCACACCTCAG 3062 Query 1347 CTCATGCTTATACTATATACTTATACTTAGNNNNNNNNNNNNTACATATAGCTTATAGTG 1406 || ||||| ||||||||| | |||||| ||| || || Sbjct 3063 CTTATGCT-ATACTATAT-----------------------TTTCATATAACTTTTATTG 3098 Query 1407 TCCATGCTCAATAGCATCatattcctagttatatagcttatgctatattatatttatacc 1466 | |||| | |||||| | ||| |||| | | ||||||| |||||| |||||||||| Sbjct 3099 GCTATGCCCTATAGCAATACATTTCTAGCTGT-TAGCTTACACTATATGCTATTTATACC 3157 Query 1467 tctttaaaaaatatataattattaaaagagttatatataaaaTGACACAGCCACCGGAAA 1526 ||||||| | ||||| | |||| ||||||||| ||||||||| ||||||||| ||||| Sbjct 3158 TCTTTAAGATATATAAACTTATGTAAAGAGTTACATATAAAATACCACAGCCACGGGAAA 3217 Query 1527 TAATATTACGCTATTGTTAATCTAGAATTGAAATTGGCGGCCATGCTCGCCACA 1580 |||||| ||||| || | ||||| | | ||||||| |||| | | |||||| Sbjct 3218 TAATATAGAGCTATGGTAAGTCTAGTACTAGAATTGGCAGCCACGTTTGCCACA 3271 >seq6422 Length=30189 Score = 161 bits (178), Expect = 1e-36 Identities = 247/354 (70%), Gaps = 29/354 (8%) Strand=Plus/Plus Query 1229 ATTGGATTCTCCTCGTTGAGACATTTTCAACGAGTCCATGTCCGACTCAAAATGGCCGCG 1288 || |||||| | ||| |||| | ||||| ||||||| |||| |||||||| | Sbjct 20929 ATCGGATTCCTCGCGTCAAGACGAATCCAACGGGTCCATGGTCGACCAAAAATGGCTACT 20988 Query 1289 CCAAGTGCCCATTTGGCGAT--GTGGCGGGTGTGGCGGGTTTTTTCCAATCCCACCTTAG 1346 |||| ||| |||| || |||||||||||||| | || ||| ||||| || Sbjct 20989 GGAAGTCCCCGATTGGAAATTGGTGGCGGGTGTGGCAGCCCAGATC--ATCTCACCTCAG 21046 Query 1347 CTCATGCTTATACTATATACTTATACTTAGNNNNNNNNNNNNTACATATAGCTTATAGTG 1406 || ||||| ||||||||| | |||||| ||| || || Sbjct 21047 CTTATGCT-ATACTATAT-----------------------TTTCATATAACTTTTATTG 21082 Query 1407 TCCATGCTCAATAGCATCatattcctagttatatagcttatgctatattatatttatacc 1466 | |||| | |||||| | ||| |||| | | |||||||| |||||| |||||||||| Sbjct 21083 GCTATGCCCTATAGCAATACATTTCTAGCTGT-TAGCTTATACTATATGCTATTTATACC 21141 Query 1467 tctttaaaaaatatataattattaaaagagttatatataaaaTGACACAGCCACCGGAAA 1526 ||||||| | ||||| | |||| ||||||||| ||||||||| ||||||||| ||||| Sbjct 21142 TCTTTAAGATATATAAACTTATGTAAAGAGTTACATATAAAATACCACAGCCACGGGAAA 21201 Query 1527 TAATATTACGCTATTGTTAATCTAGAATTGAAATTGGCGGCCATGCTCGCCACA 1580 |||||| ||||| || | ||||| | | ||||||| |||| | | ||||| Sbjct 21202 TAATATAGAGCTATGGTAAGTCTAGTACTAGAATTGGCAGCCACGTTTACCACA 21255 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6926100788390