Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Operophtera_20brumata_20[genbank_20GCA_5F001266575.1_202015-08-11]
25,801 sequences; 638,207,720 total letters
Query= NC_008858.1
Length=2235
Score E
Sequences producing significant alignments: (Bits) Value
seq9855 122 1e-24
seq6422 116 5e-23
seq2447 96.9 5e-17
seq171 80.6 4e-12
>seq9855
Length=15086
Score = 122 bits (134), Expect = 1e-24
Identities = 220/307 (72%), Gaps = 21/307 (7%)
Strand=Plus/Minus
Query 1942 GTGGCAGGCTTGGCGGTACAAATGCTA-TCCTAGATTTTCTATGGATCTTTATTATTTCC 2000
|||||| | |||| | | ||| ||| | ||||| || | || | ||| ||||||||||
Sbjct 3270 GTGGCAAACGTGGCTG--CCAATTCTAGTACTAGACTTACCATAGCTCTATATTATTTCC 3213
Query 2001 CGTGGCTGTGGTATTTTATATATAACTCTTTGta-aagttaaatatatcttaaagaggta 2059
||||||||||||||||||||| ||||||||| | ||||| ||||||||||||||||||
Sbjct 3212 CGTGGCTGTGGTATTTTATATGTAACTCTTTACATAAGTT-TATATATCTTAAAGAGGTA 3154
Query 2060 tgtatataagatataacgttaaat-atatataggagtatatTGCTAT-GAGCGTAGCC-- 2115
|| ||| ||||| || | | | | ||| | | ||||||||| | || |||||
Sbjct 3153 --TAAATAGCATATAGTGTAAGCTAACAGCTAGAAATGTATTGCTATAGGGCATAGCCAA 3096
Query 2116 TAA---GTATATGATACTAT-GAAT---ATAAGCTAAGATGGGATAGGAAAAGGCCGCCA 2168
||| ||||||| | ||| | || ||||||| || || ||| | ||| ||||
Sbjct 3095 TAAAAGTTATATGAAAATATAGTATAGCATAAGCTGAGGTGTGAT-GATCTGGGCTGCCA 3037
Query 2169 CACCTGCCAC--ATGACCACCCAAGCACTTGCCATGGGAAATTTGGATCGAGCATGGGCT 2226
|||| ||||| || ||| | | |||| | | | | ||| | |||| ||||| |
Sbjct 3036 CACCCGCCACCAATTTCCAATCGGGGACTTCCAGTAGCCATTTTTGGTCGACCATGGACC 2977
Query 2227 CGTTGGA 2233
|||||||
Sbjct 2976 CGTTGGA 2970
>seq6422
Length=30189
Score = 116 bits (128), Expect = 5e-23
Identities = 206/287 (72%), Gaps = 19/287 (7%)
Strand=Plus/Minus
Query 1962 AATGCTA-TCCTAGATTTTCTATGGATCTTTATTATTTCCCGTGGCTGTGGTATTTTATA 2020
||| ||| | ||||| || | || | ||| ||||||||||||||||||||||||||||||
Sbjct 21236 AATTCTAGTACTAGACTTACCATAGCTCTATATTATTTCCCGTGGCTGTGGTATTTTATA 21177
Query 2021 TATAACTCTTTGta-aagttaaatatatcttaaagaggtatgtatataagatataacgtt 2079
| ||||||||| | ||||| |||||||||||||||||| || ||| ||||| |
Sbjct 21176 TGTAACTCTTTACATAAGTT-TATATATCTTAAAGAGGTA--TAAATAGCATATAGTATA 21120
Query 2080 aaat-atatataggagtatatTGCTAT-GAGCGTAGCC--TAA---GTATATGATACTAT 2132
| | | | ||| | | ||||||||| | || ||||| ||| ||||||| | |||
Sbjct 21119 AGCTAACAGCTAGAAATGTATTGCTATAGGGCATAGCCAATAAAAGTTATATGAAAATAT 21060
Query 2133 -GAAT---ATAAGCTAAGATGGGATAGGAAAAGGCCGCCACACCTGCCAC--ATGACCAC 2186
| || ||||||| || || ||| | ||| |||||||| ||||| || |||
Sbjct 21059 AGTATAGCATAAGCTGAGGTGAGAT-GATCTGGGCTGCCACACCCGCCACCAATTTCCAA 21001
Query 2187 CCAAGCACTTGCCATGGGAAATTTGGATCGAGCATGGGCTCGTTGGA 2233
| | |||| | | | | ||| | |||| ||||| | |||||||
Sbjct 21000 TCGGGGACTTCCAGTAGCCATTTTTGGTCGACCATGGACCCGTTGGA 20954
>seq2447
Length=64305
Score = 96.9 bits (106), Expect = 5e-17
Identities = 123/164 (75%), Gaps = 9/164 (5%)
Strand=Plus/Plus
Query 1966 CTATCCTAGATTTTCTATGGATCTTTATTATTTCCCGTGGCTGTGGTATTTTATATATAA 2025
|||| |||||||| |||| | ||| || ||||| ||||||||||| ||||||| ||
Sbjct 3142 CTATTCTAGATTTGCTATAGCTCTATACGATTTCTTGTGGCTGTGGTTATTTATATCAAA 3201
Query 2026 CTCTTTGta-aagttaaatatatcttaaagaggtatgtatataagatataacgttaaata 2084
|||||| | ||||| ||||||||||||||||||| ||| | ||| ||| || ||
Sbjct 3202 CTCTTTAAATAAGTT-TATATATCTTAAAGAGGTATAAATAGGAAATAGAAC--TAGCTA 3258
Query 2085 tata--taggagtatatTGCTATGAGCGTAGCC---TAAGTATA 2123
|||| ||| | | |||| || ||||||| | ||||||||
Sbjct 3259 TATAGTTAGAAATGTATTATAATAAGCGTAGTCATATAAGTATA 3302
>seq171
Length=184467
Score = 80.6 bits (88), Expect = 4e-12
Identities = 92/120 (77%), Gaps = 3/120 (3%)
Strand=Plus/Plus
Query 50 AAGGGCTGGCCTTCTGCAGCCACATATGTCCCTTCAACGT-GTGGCGTGTACTTTTTCAA 108
||||| || ||||||||||| | |||| | | || | ||||| ||||||||| ||
Sbjct 159046 AAGGGGTGAGCTTCTGCAGCCCTAAATGTAC-TACAGATTCGTGGCAGGTACTTTTT-AA 159103
Query 109 GAAATTACACGTTTTCATTGCAATAAACGAACTCGAGTGAAAGACCTGGACCCATAGTAC 168
|||||||||| ||||||| |||| ||||||||| | || ||| | ||||| ||||||
Sbjct 159104 GAAATTACACATTTTCATCGCAAGAAACGAACTTGGTCGACAGAGCCAGACCCGTAGTAC 159163
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 7041269207966
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |