Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Operophtera_20brumata_20[genbank_20GCA_5F001266575.1_202015-08-11] 25,801 sequences; 638,207,720 total letters Query= NC_008858.1 Length=2235 Score E Sequences producing significant alignments: (Bits) Value seq9855 122 1e-24 seq6422 116 5e-23 seq2447 96.9 5e-17 seq171 80.6 4e-12 >seq9855 Length=15086 Score = 122 bits (134), Expect = 1e-24 Identities = 220/307 (72%), Gaps = 21/307 (7%) Strand=Plus/Minus Query 1942 GTGGCAGGCTTGGCGGTACAAATGCTA-TCCTAGATTTTCTATGGATCTTTATTATTTCC 2000 |||||| | |||| | | ||| ||| | ||||| || | || | ||| |||||||||| Sbjct 3270 GTGGCAAACGTGGCTG--CCAATTCTAGTACTAGACTTACCATAGCTCTATATTATTTCC 3213 Query 2001 CGTGGCTGTGGTATTTTATATATAACTCTTTGta-aagttaaatatatcttaaagaggta 2059 ||||||||||||||||||||| ||||||||| | ||||| |||||||||||||||||| Sbjct 3212 CGTGGCTGTGGTATTTTATATGTAACTCTTTACATAAGTT-TATATATCTTAAAGAGGTA 3154 Query 2060 tgtatataagatataacgttaaat-atatataggagtatatTGCTAT-GAGCGTAGCC-- 2115 || ||| ||||| || | | | | ||| | | ||||||||| | || ||||| Sbjct 3153 --TAAATAGCATATAGTGTAAGCTAACAGCTAGAAATGTATTGCTATAGGGCATAGCCAA 3096 Query 2116 TAA---GTATATGATACTAT-GAAT---ATAAGCTAAGATGGGATAGGAAAAGGCCGCCA 2168 ||| ||||||| | ||| | || ||||||| || || ||| | ||| |||| Sbjct 3095 TAAAAGTTATATGAAAATATAGTATAGCATAAGCTGAGGTGTGAT-GATCTGGGCTGCCA 3037 Query 2169 CACCTGCCAC--ATGACCACCCAAGCACTTGCCATGGGAAATTTGGATCGAGCATGGGCT 2226 |||| ||||| || ||| | | |||| | | | | ||| | |||| ||||| | Sbjct 3036 CACCCGCCACCAATTTCCAATCGGGGACTTCCAGTAGCCATTTTTGGTCGACCATGGACC 2977 Query 2227 CGTTGGA 2233 ||||||| Sbjct 2976 CGTTGGA 2970 >seq6422 Length=30189 Score = 116 bits (128), Expect = 5e-23 Identities = 206/287 (72%), Gaps = 19/287 (7%) Strand=Plus/Minus Query 1962 AATGCTA-TCCTAGATTTTCTATGGATCTTTATTATTTCCCGTGGCTGTGGTATTTTATA 2020 ||| ||| | ||||| || | || | ||| |||||||||||||||||||||||||||||| Sbjct 21236 AATTCTAGTACTAGACTTACCATAGCTCTATATTATTTCCCGTGGCTGTGGTATTTTATA 21177 Query 2021 TATAACTCTTTGta-aagttaaatatatcttaaagaggtatgtatataagatataacgtt 2079 | ||||||||| | ||||| |||||||||||||||||| || ||| ||||| | Sbjct 21176 TGTAACTCTTTACATAAGTT-TATATATCTTAAAGAGGTA--TAAATAGCATATAGTATA 21120 Query 2080 aaat-atatataggagtatatTGCTAT-GAGCGTAGCC--TAA---GTATATGATACTAT 2132 | | | | ||| | | ||||||||| | || ||||| ||| ||||||| | ||| Sbjct 21119 AGCTAACAGCTAGAAATGTATTGCTATAGGGCATAGCCAATAAAAGTTATATGAAAATAT 21060 Query 2133 -GAAT---ATAAGCTAAGATGGGATAGGAAAAGGCCGCCACACCTGCCAC--ATGACCAC 2186 | || ||||||| || || ||| | ||| |||||||| ||||| || ||| Sbjct 21059 AGTATAGCATAAGCTGAGGTGAGAT-GATCTGGGCTGCCACACCCGCCACCAATTTCCAA 21001 Query 2187 CCAAGCACTTGCCATGGGAAATTTGGATCGAGCATGGGCTCGTTGGA 2233 | | |||| | | | | ||| | |||| ||||| | ||||||| Sbjct 21000 TCGGGGACTTCCAGTAGCCATTTTTGGTCGACCATGGACCCGTTGGA 20954 >seq2447 Length=64305 Score = 96.9 bits (106), Expect = 5e-17 Identities = 123/164 (75%), Gaps = 9/164 (5%) Strand=Plus/Plus Query 1966 CTATCCTAGATTTTCTATGGATCTTTATTATTTCCCGTGGCTGTGGTATTTTATATATAA 2025 |||| |||||||| |||| | ||| || ||||| ||||||||||| ||||||| || Sbjct 3142 CTATTCTAGATTTGCTATAGCTCTATACGATTTCTTGTGGCTGTGGTTATTTATATCAAA 3201 Query 2026 CTCTTTGta-aagttaaatatatcttaaagaggtatgtatataagatataacgttaaata 2084 |||||| | ||||| ||||||||||||||||||| ||| | ||| ||| || || Sbjct 3202 CTCTTTAAATAAGTT-TATATATCTTAAAGAGGTATAAATAGGAAATAGAAC--TAGCTA 3258 Query 2085 tata--taggagtatatTGCTATGAGCGTAGCC---TAAGTATA 2123 |||| ||| | | |||| || ||||||| | |||||||| Sbjct 3259 TATAGTTAGAAATGTATTATAATAAGCGTAGTCATATAAGTATA 3302 >seq171 Length=184467 Score = 80.6 bits (88), Expect = 4e-12 Identities = 92/120 (77%), Gaps = 3/120 (3%) Strand=Plus/Plus Query 50 AAGGGCTGGCCTTCTGCAGCCACATATGTCCCTTCAACGT-GTGGCGTGTACTTTTTCAA 108 ||||| || ||||||||||| | |||| | | || | ||||| ||||||||| || Sbjct 159046 AAGGGGTGAGCTTCTGCAGCCCTAAATGTAC-TACAGATTCGTGGCAGGTACTTTTT-AA 159103 Query 109 GAAATTACACGTTTTCATTGCAATAAACGAACTCGAGTGAAAGACCTGGACCCATAGTAC 168 |||||||||| ||||||| |||| ||||||||| | || ||| | ||||| |||||| Sbjct 159104 GAAATTACACATTTTCATCGCAAGAAACGAACTTGGTCGACAGAGCCAGACCCGTAGTAC 159163 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7041269207966