Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Operophtera_20brumata_20[genbank_20GCA_5F001266575.1_202015-08-11]
25,801 sequences; 638,207,720 total letters
Query= NC_008859.1
Length=2262
Score E
Sequences producing significant alignments: (Bits) Value
seq6422 136 6e-29
seq9855 132 7e-28
seq2447 122 1e-24
seq1896 82.4 1e-12
>seq6422
Length=30189
Score = 136 bits (150), Expect = 6e-29
Identities = 167/222 (75%), Gaps = 12/222 (5%)
Strand=Plus/Minus
Query 429 CTAGATTTACTATAGCCTTATACTTTTTCT-GTGGCTGTGGTATTTTATAAATAACTCTT 487
||||| |||| ||||| |||| | |||| ||||||||||||||||||| ||||||||
Sbjct 21226 CTAGACTTACCATAGCTCTATATTATTTCCCGTGGCTGTGGTATTTTATATGTAACTCTT 21167
Query 488 TAAATAATTTTATTTTTCTTAAAGAGGTATATATATAATGTA----AAGCTAGTATATAG 543
|| |||| ||||| | ||||||||||||||| ||| || || |||||| | ||
Sbjct 21166 TACATAAGTTTATATATCTTAAAGAGGTATAAATAGCATATAGTATAAGCTA----ACAG 21111
Query 544 CTAGGAATATATTACTATA-CGTAAAGCCAGTAAAGGCTATATGAATATAGCGTATTAAT 602
|||| ||| |||| ||||| | | ||||| |||| | |||||||| ||| ||| ||
Sbjct 21110 CTAGAAATGTATTGCTATAGGGCATAGCCAATAAAAGTTATATGAAAATATAGTA-TAGC 21052
Query 603 ATAAGCTATGGTAAGATTGAATGTACCAGCCACACACGCCAC 644
||||||| ||| ||| ||| | ||||||| ||||||
Sbjct 21051 ATAAGCTGAGGTGAGA-TGATCTGGGCTGCCACACCCGCCAC 21011
>seq9855
Length=15086
Score = 132 bits (146), Expect = 7e-28
Identities = 166/222 (75%), Gaps = 12/222 (5%)
Strand=Plus/Minus
Query 429 CTAGATTTACTATAGCCTTATACTTTTTCT-GTGGCTGTGGTATTTTATAAATAACTCTT 487
||||| |||| ||||| |||| | |||| ||||||||||||||||||| ||||||||
Sbjct 3242 CTAGACTTACCATAGCTCTATATTATTTCCCGTGGCTGTGGTATTTTATATGTAACTCTT 3183
Query 488 TAAATAATTTTATTTTTCTTAAAGAGGTATATATATAATGTA----AAGCTAGTATATAG 543
|| |||| ||||| | ||||||||||||||| ||| || || |||||| | ||
Sbjct 3182 TACATAAGTTTATATATCTTAAAGAGGTATAAATAGCATATAGTGTAAGCTA----ACAG 3127
Query 544 CTAGGAATATATTACTATA-CGTAAAGCCAGTAAAGGCTATATGAATATAGCGTATTAAT 602
|||| ||| |||| ||||| | | ||||| |||| | |||||||| ||| ||| ||
Sbjct 3126 CTAGAAATGTATTGCTATAGGGCATAGCCAATAAAAGTTATATGAAAATATAGTA-TAGC 3068
Query 603 ATAAGCTATGGTAAGATTGAATGTACCAGCCACACACGCCAC 644
||||||| ||| || ||| | ||||||| ||||||
Sbjct 3067 ATAAGCTGAGGTGTGA-TGATCTGGGCTGCCACACCCGCCAC 3027
>seq2447
Length=64305
Score = 122 bits (134), Expect = 1e-24
Identities = 109/134 (81%), Gaps = 2/134 (1%)
Strand=Plus/Plus
Query 426 ATTCTAGATTTACTATAGCCTTATACTTTTTCT-GTGGCTGTGGTATTTTATAAATAACT 484
||||||||||| ||||||| ||||| ||||| ||||||||||| |||||| ||||
Sbjct 3144 ATTCTAGATTTGCTATAGCTCTATACGATTTCTTGTGGCTGTGGTTATTTATATCAAACT 3203
Query 485 CTTTAAATAATTTTATTTTTCTTAAAGAGGTATATATATAATGTAAAGCTAG-TATATAG 543
|||||||||| ||||| | ||||||||||||||| ||| | || | |||| |||||||
Sbjct 3204 CTTTAAATAAGTTTATATATCTTAAAGAGGTATAAATAGGAAATAGAACTAGCTATATAG 3263
Query 544 CTAGGAATATATTA 557
||| ||| |||||
Sbjct 3264 TTAGAAATGTATTA 3277
>seq1896
Length=105120
Score = 82.4 bits (90), Expect = 1e-12
Identities = 120/164 (73%), Gaps = 17/164 (10%)
Strand=Plus/Minus
Query 421 ATTTC-ATTCTAGATTTACTATAGCCTTATACTTTTTC-TGTGGCTGTGGTATTTTATAA 478
||||| || |||||||||||||||| ||||| |||| ||||||||||||||||||||
Sbjct 45773 ATTTCTATCCTAGATTTACTATAGCTTTATATAATTTCTTGTGGCTGTGGTATTTTATA- 45715
Query 479 ATAACTCTTTAAATAATTTTA----TTTTTCTTAAAGAGGTATATATATAATGTAAAG-- 532
|||||||||||||| | | |||| ||| || ||| ||| | || ||
Sbjct 45714 ------GTTTAAATAATTTTATACTTATATCTTGAAGGGGAATAAATAGGGT-TATAGCA 45662
Query 533 CTAG-TATATAGCTAGGAATATATTACTATACGTAAAGCCAGTA 575
|||| || | | ||| |||| ||| ||||| ||| |||| ||
Sbjct 45661 CTAGCTAGAGACCTAATAATAAATTGCTATAGTTAATGCCATTA 45618
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 7127645522648
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |