Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Operophtera_20brumata_20[genbank_20GCA_5F001266575.1_202015-08-11] 25,801 sequences; 638,207,720 total letters Query= NC_008859.1 Length=2262 Score E Sequences producing significant alignments: (Bits) Value seq6422 136 6e-29 seq9855 132 7e-28 seq2447 122 1e-24 seq1896 82.4 1e-12 >seq6422 Length=30189 Score = 136 bits (150), Expect = 6e-29 Identities = 167/222 (75%), Gaps = 12/222 (5%) Strand=Plus/Minus Query 429 CTAGATTTACTATAGCCTTATACTTTTTCT-GTGGCTGTGGTATTTTATAAATAACTCTT 487 ||||| |||| ||||| |||| | |||| ||||||||||||||||||| |||||||| Sbjct 21226 CTAGACTTACCATAGCTCTATATTATTTCCCGTGGCTGTGGTATTTTATATGTAACTCTT 21167 Query 488 TAAATAATTTTATTTTTCTTAAAGAGGTATATATATAATGTA----AAGCTAGTATATAG 543 || |||| ||||| | ||||||||||||||| ||| || || |||||| | || Sbjct 21166 TACATAAGTTTATATATCTTAAAGAGGTATAAATAGCATATAGTATAAGCTA----ACAG 21111 Query 544 CTAGGAATATATTACTATA-CGTAAAGCCAGTAAAGGCTATATGAATATAGCGTATTAAT 602 |||| ||| |||| ||||| | | ||||| |||| | |||||||| ||| ||| || Sbjct 21110 CTAGAAATGTATTGCTATAGGGCATAGCCAATAAAAGTTATATGAAAATATAGTA-TAGC 21052 Query 603 ATAAGCTATGGTAAGATTGAATGTACCAGCCACACACGCCAC 644 ||||||| ||| ||| ||| | ||||||| |||||| Sbjct 21051 ATAAGCTGAGGTGAGA-TGATCTGGGCTGCCACACCCGCCAC 21011 >seq9855 Length=15086 Score = 132 bits (146), Expect = 7e-28 Identities = 166/222 (75%), Gaps = 12/222 (5%) Strand=Plus/Minus Query 429 CTAGATTTACTATAGCCTTATACTTTTTCT-GTGGCTGTGGTATTTTATAAATAACTCTT 487 ||||| |||| ||||| |||| | |||| ||||||||||||||||||| |||||||| Sbjct 3242 CTAGACTTACCATAGCTCTATATTATTTCCCGTGGCTGTGGTATTTTATATGTAACTCTT 3183 Query 488 TAAATAATTTTATTTTTCTTAAAGAGGTATATATATAATGTA----AAGCTAGTATATAG 543 || |||| ||||| | ||||||||||||||| ||| || || |||||| | || Sbjct 3182 TACATAAGTTTATATATCTTAAAGAGGTATAAATAGCATATAGTGTAAGCTA----ACAG 3127 Query 544 CTAGGAATATATTACTATA-CGTAAAGCCAGTAAAGGCTATATGAATATAGCGTATTAAT 602 |||| ||| |||| ||||| | | ||||| |||| | |||||||| ||| ||| || Sbjct 3126 CTAGAAATGTATTGCTATAGGGCATAGCCAATAAAAGTTATATGAAAATATAGTA-TAGC 3068 Query 603 ATAAGCTATGGTAAGATTGAATGTACCAGCCACACACGCCAC 644 ||||||| ||| || ||| | ||||||| |||||| Sbjct 3067 ATAAGCTGAGGTGTGA-TGATCTGGGCTGCCACACCCGCCAC 3027 >seq2447 Length=64305 Score = 122 bits (134), Expect = 1e-24 Identities = 109/134 (81%), Gaps = 2/134 (1%) Strand=Plus/Plus Query 426 ATTCTAGATTTACTATAGCCTTATACTTTTTCT-GTGGCTGTGGTATTTTATAAATAACT 484 ||||||||||| ||||||| ||||| ||||| ||||||||||| |||||| |||| Sbjct 3144 ATTCTAGATTTGCTATAGCTCTATACGATTTCTTGTGGCTGTGGTTATTTATATCAAACT 3203 Query 485 CTTTAAATAATTTTATTTTTCTTAAAGAGGTATATATATAATGTAAAGCTAG-TATATAG 543 |||||||||| ||||| | ||||||||||||||| ||| | || | |||| ||||||| Sbjct 3204 CTTTAAATAAGTTTATATATCTTAAAGAGGTATAAATAGGAAATAGAACTAGCTATATAG 3263 Query 544 CTAGGAATATATTA 557 ||| ||| ||||| Sbjct 3264 TTAGAAATGTATTA 3277 >seq1896 Length=105120 Score = 82.4 bits (90), Expect = 1e-12 Identities = 120/164 (73%), Gaps = 17/164 (10%) Strand=Plus/Minus Query 421 ATTTC-ATTCTAGATTTACTATAGCCTTATACTTTTTC-TGTGGCTGTGGTATTTTATAA 478 ||||| || |||||||||||||||| ||||| |||| |||||||||||||||||||| Sbjct 45773 ATTTCTATCCTAGATTTACTATAGCTTTATATAATTTCTTGTGGCTGTGGTATTTTATA- 45715 Query 479 ATAACTCTTTAAATAATTTTA----TTTTTCTTAAAGAGGTATATATATAATGTAAAG-- 532 |||||||||||||| | | |||| ||| || ||| ||| | || || Sbjct 45714 ------GTTTAAATAATTTTATACTTATATCTTGAAGGGGAATAAATAGGGT-TATAGCA 45662 Query 533 CTAG-TATATAGCTAGGAATATATTACTATACGTAAAGCCAGTA 575 |||| || | | ||| |||| ||| ||||| ||| |||| || Sbjct 45661 CTAGCTAGAGACCTAATAATAAATTGCTATAGTTAATGCCATTA 45618 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7127645522648