Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Operophtera_20brumata_20[genbank_20GCA_5F001266575.1_202015-08-11] 25,801 sequences; 638,207,720 total letters Query= NC_008862.1 Length=2298 Score E Sequences producing significant alignments: (Bits) Value seq659 123 4e-25 seq2440 111 2e-21 seq1669 104 3e-19 seq2107 102 1e-18 seq5579 98.7 1e-17 seq11381 82.4 1e-12 seq5422 77.0 5e-11 >seq659 Length=123042 Score = 123 bits (136), Expect = 4e-25 Identities = 180/251 (72%), Gaps = 4/251 (2%) Strand=Plus/Plus Query 999 TGTTCCACGTCATGTGTCGAGGTAATGAGTTTCAAGATATTATTTTTCGAAATGAAGGCA 1058 ||| | ||| ||||| |||||| | || ||| || ||||||||||| |||||||| | Sbjct 46746 TGTGCGACGAAATGTGCCGAGGTCAAGATTTTGAAAATATTATTTTTGAAAATGAAGAGA 46805 Query 1059 TGTGAATGACCAAAATTTCTCGCCTGATTTGGGCTCCTAATGAACCAGGCTATACGTAGA 1118 | | || ||||| ||||| | |||||| || | |||| | ||||||| |||| | Sbjct 46806 TCAGCATTGCCAAATTTTCTTTTCATATTTGGACTGCCAATGGATCAGGCTACACGTTGG 46865 Query 1119 CACATCAATTTTCATTATCGTATCACTTTAAGGGGGTCAAAACGTTCATGTTC--CATGT 1176 | | |||| |||| | || |||||| ||||||||| |||||| ||||| Sbjct 46866 TATTTTTTGTTTCGAAATCGAACCATTTTAAGTGGGTCAAAAATGCGATGTTCCACATGT 46925 Query 1177 TCCAAAAT-TTCCGGG-GTTTGGAGACCCAAAGCCCGTAGCCAGGTGAACACTATACTAC 1234 ||||| | ||||||| ||||| || | || | ||||||||| ||||||||||| Sbjct 46926 TCCAAGGTGTTCCGGGCTTTTGGGAACTCGAAACTTCTAGCCAGGTACTCACTATACTAC 46985 Query 1235 TACTCTCTAAT 1245 |||||| |||| Sbjct 46986 TACTCTTTAAT 46996 >seq2440 Length=66919 Score = 111 bits (122), Expect = 2e-21 Identities = 179/251 (71%), Gaps = 6/251 (2%) Strand=Plus/Minus Query 998 CTGTTCCACGTCATGTGTCGAGGTAATGAGTTTC-AAGATATTATTTTTCGAAATGAAGG 1056 |||||||||| | ||| | ||| | | ||||| || ||||| ||||| || ||||| Sbjct 17904 CTGTTCCACGAAACGTGCCAGGGTCAAG-GTTTCGAAAATATTTTTTTTTTCAACGAAGG 17846 Query 1057 CATGTGAATGACCAAAATTTCTCGCCTGATTTGGGCTCCTAATGAACCAGGCTATACGTA 1116 || |||| | | || || || || || || | |||||||||||||| |||| Sbjct 17845 GATTAGAATTAGCCCTTTTCCTTTTCTAATCTGAACTGCCAATGAACCAGGCTACCCGTA 17786 Query 1117 GACACATCAATTTTCATTATCGTATCACTTTAAGGGGGTCAAAACGTTCATGTTC--CAT 1174 | | | ||| | ||| | |||||||||||||| |||| |||||||| ||| Sbjct 17785 GGTATTTTTTGTTTTTTAATCTAACCACTTTAAGGGGGTGAAAAACGTCATGTTCCACAT 17726 Query 1175 GTTCCAAAAT-TTCCGGGG-TTTGGAGACCCAAAGCCCGTAGCCAGGTGAACACTATACT 1232 ||||||| || |||||||| |||||| || || | ||||||| | | ||||||||| Sbjct 17725 GTTCCAAGATGTTCCGGGGTTTTGGAAACTCAGAATTTCTAGCCAGCTAACCACTATACT 17666 Query 1233 ACTACTCTCTA 1243 |||||||| || Sbjct 17665 ACTACTCTTTA 17655 >seq1669 Length=80833 Score = 104 bits (114), Expect = 3e-19 Identities = 178/252 (71%), Gaps = 6/252 (2%) Strand=Plus/Plus Query 998 CTGTTCCACGTCATGTGTCGAGGTAATGAG-TTTC-AAGATATTATTTTTCGAAATGAAG 1055 |||||||||| | ||| | ||| || |||| || ||||| ||||| || |||| Sbjct 4028 CTGTTCCACGAAACGTGCCAGGGTCTCAAGGTTTCGAAAATATTTTTTTTTTCAACGAAG 4087 Query 1056 GCATGTGAATGACCAAAATTTCTCGCCTGATTTGGGCTCCTAATGAACCAGGCTATACGT 1115 | || |||| | | | ||||| || || || || | |||||||||||||| ||| Sbjct 4088 GGATTAGAATTAGCCATTTTTCTTTTCTAATATGAACTGCCAATGAACCAGGCTACCCGT 4147 Query 1116 AGACACATCAATTTTCATTATCGTATCACTTTAAGGGGGTCAAAACGTTCATGTTC--CA 1173 || | | ||| | ||| | |||||||||||| | |||| |||||||| || Sbjct 4148 AGGTATTTTTTGTTTTTTAATCTAACCACTTTAAGGGGATGAAAAACGTCATGTTCCACA 4207 Query 1174 TGTTCCAAAAT-TTCC-GGGGTTTGGAGACCCAAAGCCCGTAGCCAGGTGAACACTATAC 1231 |||||||| || |||| ||| |||||| || || | ||||||| | | |||||||| Sbjct 4208 TGTTCCAAGATGTTCCAGGGTTTTGGAAACTCAGAATTTCTAGCCAGCTAACCACTATAC 4267 Query 1232 TACTACTCTCTA 1243 ||||||||| || Sbjct 4268 TACTACTCTTTA 4279 >seq2107 Length=86179 Score = 102 bits (112), Expect = 1e-18 Identities = 184/260 (71%), Gaps = 8/260 (3%) Strand=Plus/Minus Query 998 CTGTTCCACGTCATGTGTCGAGGTAATGAGTTTC-AAGATATTATTTTTCGAAATGAAGG 1056 |||||||||| | || | ||| | | ||||| || ||||| ||||| || ||||| Sbjct 12467 CTGTTCCACGAAACATGCCAGGGTCAAG-GTTTCGAAAATATTTTTTTTTTCAACGAAGG 12409 Query 1057 CATGTGAATGACCAAAATTTCTCGCCTGATTTGGGCTCCTAATGAACCAGGCTATACGTA 1116 || |||| | | ||||| || || || || | |||||||||||||| |||| Sbjct 12408 GATTAGAATTAGCCCTTTTTCTTTTCTAATCTGAACTGCCAATGAACCAGGCTACCCGTA 12349 Query 1117 GACACATCAATTTTCATTATCGTATCACTTTAAGGGGGTCAAAACGTTCATGTTC--CAT 1174 | | | ||| | ||| | |||||||||||||| |||| |||||||| ||| Sbjct 12348 GGTATTTTTTGTTTTTTAATCTAACCACTTTAAGGGGGTGAAAAACGTCATGTTCCACAT 12289 Query 1175 GTTCCAAAAT-TTCCGGGG-TTTGGAGACCCAAAGCCCGTAGCCAGGTGAACACTATACT 1232 ||||||| || |||||||| |||||| || || | ||||||| | | ||||||||| Sbjct 12288 GTTCCAAGATGTTCCGGGGTTTTGGAAACTCAGAATTTCTAGCCAGCTAACCACTATACT 12229 Query 1233 AC-TACTCTCTAATACTTAA 1251 || |||| | | ||||||| Sbjct 12228 ACTTACTATAT-TTACTTAA 12210 >seq5579 Length=35077 Score = 98.7 bits (108), Expect = 1e-17 Identities = 177/251 (71%), Gaps = 7/251 (3%) Strand=Plus/Plus Query 998 CTGTTCCACGTCATGTGTCGAGGTAATGAGTTTC-AAGATATTATTTTTCGAAATGAAGG 1056 |||||||||| | ||| | ||| | | ||||| || ||||| ||||| || ||||| Sbjct 481 CTGTTCCACGAAACGTGCCAGGGTCAAG-GTTTCGAAAATATTTTTTTTTCAAC-GAAGG 538 Query 1057 CATGTGAATGACCAAAATTTCTCGCCTGATTTGGGCTCCTAATGAACCAGGCTATACGTA 1116 || |||| | | ||||| || || || || | |||||| ||||||| |||| Sbjct 539 GATTAGAATTAGCCCTTTTTCTTTTCTAATCTGAACTGCCAATGAATCAGGCTACCCGTA 598 Query 1117 GACACATCAATTTTCATTATCGTATCACTTTAAGGGGGTCAAAACGTTCATGTTCCA--T 1174 | | | ||| | ||| | ||||| |||||||| |||| |||||||||| | Sbjct 599 GGTATTTTTTGTTTTTTAATCTAACCACTTAAAGGGGGTGAAAAACGTCATGTTCCACAT 658 Query 1175 GTTCCAAAAT-TTCCGGGGTTT-GGAGACCCAAAGCCCGTAGCCAGGTGAACACTATACT 1232 ||||||| || ||||||||||| ||| || || | |||| || | | ||||||||| Sbjct 659 GTTCCAAGATGTTCCGGGGTTTTGGAAACTCAGAATTTCTAGCTAGCTAACCACTATACT 718 Query 1233 ACTACTCTCTA 1243 |||||||| || Sbjct 719 ACTACTCTTTA 729 >seq11381 Length=10962 Score = 82.4 bits (90), Expect = 1e-12 Identities = 91/119 (76%), Gaps = 3/119 (3%) Strand=Plus/Plus Query 1128 TTTCATTATCGTATCACTTTAAGGGGGTCAAAACGTTCATGTTCCA--TGTTCCAAAAT- 1184 ||||| |||| | |||||||||||||| |||| |||||||||| |||||||| | Sbjct 2950 TTTCAAAATCGAACCACTTTAAGGGGGTGAAAAGCGTCATGTTCCATTTGTTCCAAGGTG 3009 Query 1185 TTCCGGGGTTTGGAGACCCAAAGCCCGTAGCCAGGTGAACACTATACTACTACTCTCTA 1243 |||||||||| | || || | | ||||||| | ||||||||||||||||| || Sbjct 3010 GTCCGGGGTTTAGGAACTCAGAACTTCTAGCCAGCTAGCCACTATACTACTACTCTTTA 3068 >seq5422 Length=35978 Score = 77.0 bits (84), Expect = 5e-11 Identities = 129/186 (69%), Gaps = 2/186 (1%) Strand=Plus/Plus Query 998 CTGTTCCACGTCATGTGTCGAGGTAATGAGTTTCAAGATATTATTTTTCGAAATGAAGGC 1057 |||||||||| ||||| || ||| | | || || ||||||||| | |||| | Sbjct 4671 CTGTTCCACGAAATGTGCCGGGGTCAAGGTTTAGAAATTATTATTTTATTCATTGAATGG 4730 Query 1058 ATGTGAATGACCAAAATTTCTCGCCTGATTTGGGCTCCTAATGAACCAGGCTATACGTAG 1117 || |||| | | |||||| | || || || | |||||||||||||| ||||| Sbjct 4731 ATTAGAATTAGCCCTATTTCTTTTCCAATCTGAACTGCCAATGAACCAGGCTACCCGTAG 4790 Query 1118 ACACATCAATTTTCATTATCGTATCACTTTAAGGGGGTCAAAACGTTCATGTTC--CATG 1175 | | ||||| ||||| | ||||||||| ||| |||| |||||||| |||| Sbjct 4791 GTAATTTTTTTTTCGATATCGAACCACTTTAAGTGGGCGAAAAACGTCATGTTCCACATG 4850 Query 1176 TTCCAA 1181 |||||| Sbjct 4851 TTCCAA 4856 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7242813942224