Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Operophtera_20brumata_20[genbank_20GCA_5F001266575.1_202015-08-11] 25,801 sequences; 638,207,720 total letters Query= NC_008863.1 Length=2318 Score E Sequences producing significant alignments: (Bits) Value seq6422 228 1e-56 seq9855 226 4e-56 seq2447 154 2e-34 seq1896 95.1 2e-16 seq16437 91.5 2e-15 >seq6422 Length=30189 Score = 228 bits (252), Expect = 1e-56 Identities = 196/237 (83%), Gaps = 4/237 (2%) Strand=Plus/Minus Query 73 TGGCTGGTCATTTTCATTCTAGATTTTCCATAGCTCTATGCGTTTTCCCGTGGCTGTGGT 132 |||||| ||| | | ||||| || |||||||||||| ||||||||||||||||| Sbjct 21244 TGGCTGCCAATTCTAGTACTAGACTTACCATAGCTCTATATTATTTCCCGTGGCTGTGGT 21185 Query 133 ATTTTATATGTAACTCTTTACATAAGTTTATATATCTTAAAGAGGTATAGATAGCATATA 192 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 21184 ATTTTATATGTAACTCTTTACATAAGTTTATATATCTTAAAGAGGTATAAATAGCATATA 21125 Query 193 GGACTAGCTATAGAGCTAGTAGTGTATTGCTATA-GGAAAGGTCACTAGAGGCTATGTAA 251 | | ||||| | |||||| | |||||||||||| || | | || || | | ||| | | Sbjct 21124 GTATAAGCTA-ACAGCTAGAAATGTATTGCTATAGGGCATAGCCAATAAAAGTTATATGA 21066 Query 252 AAATGTAGTATAAGCATAAGCTGAGGTGGGATTGAAAATGGCAGCCACACCCGCCAC 308 |||| |||||| |||||||||||||||| || ||| ||| |||||||||||||| Sbjct 21065 AAATATAGTAT-AGCATAAGCTGAGGTGAGA-TGATCTGGGCTGCCACACCCGCCAC 21011 >seq9855 Length=15086 Score = 226 bits (250), Expect = 4e-56 Identities = 202/248 (81%), Gaps = 4/248 (2%) Strand=Plus/Minus Query 62 TGTGGCTGATATGGCTGGTCATTTTCATTCTAGATTTTCCATAGCTCTATGCGTTTTCCC 121 |||||| | |||||| ||| | | ||||| || |||||||||||| |||||| Sbjct 3271 TGTGGCAAACGTGGCTGCCAATTCTAGTACTAGACTTACCATAGCTCTATATTATTTCCC 3212 Query 122 GTGGCTGTGGTATTTTATATGTAACTCTTTACATAAGTTTATATATCTTAAAGAGGTATA 181 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 3211 GTGGCTGTGGTATTTTATATGTAACTCTTTACATAAGTTTATATATCTTAAAGAGGTATA 3152 Query 182 GATAGCATATAGGACTAGCTATAGAGCTAGTAGTGTATTGCTATA-GGAAAGGTCACTAG 240 ||||||||||| ||||| | |||||| | |||||||||||| || | | || || Sbjct 3151 AATAGCATATAGTGTAAGCTA-ACAGCTAGAAATGTATTGCTATAGGGCATAGCCAATAA 3093 Query 241 AGGCTATGTAAAAATGTAGTATAAGCATAAGCTGAGGTGGGATTGAAAATGGCAGCCACA 300 | | ||| | ||||| |||||| |||||||||||||||| || ||| ||| |||||| Sbjct 3092 AAGTTATATGAAAATATAGTAT-AGCATAAGCTGAGGTGTGA-TGATCTGGGCTGCCACA 3035 Query 301 CCCGCCAC 308 |||||||| Sbjct 3034 CCCGCCAC 3027 >seq2447 Length=64305 Score = 154 bits (170), Expect = 2e-34 Identities = 114/133 (86%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 88 ATTCTAGATTTTCCATAGCTCTATGCGTTTTCCCGTGGCTGTGGTATTTTATATGTAACT 147 ||||||||||| | |||||||||| || |||| ||||||||||| ||||||| |||| Sbjct 3144 ATTCTAGATTTGCTATAGCTCTATACGATTTCTTGTGGCTGTGGTTATTTATATCAAACT 3203 Query 148 CTTTACATAAGTTTATATATCTTAAAGAGGTATAGATAGCATATAGGACTAGCTATAGAG 207 ||||| |||||||||||||||||||||||||||| |||| | |||| |||||||||| || Sbjct 3204 CTTTAAATAAGTTTATATATCTTAAAGAGGTATAAATAGGAAATAGAACTAGCTATATAG 3263 Query 208 CTAGTAGTGTATT 220 ||| | |||||| Sbjct 3264 TTAGAAATGTATT 3276 >seq1896 Length=105120 Score = 95.1 bits (104), Expect = 2e-16 Identities = 124/171 (73%), Gaps = 17/171 (10%) Strand=Plus/Minus Query 62 TGTGGCTGATATGGCTGGTCATTTTCATTCTAGATTTTCCATAGCTCTATGCGTTTTCCC 121 ||||||| ||| | |||||| || |||||||| | |||||| ||| |||| Sbjct 45788 TGTGGCTAATA-----GATCATTTCTATCCTAGATTTACTATAGCTTTATATAATTTCTT 45734 Query 122 GTGGCTGTGGTATTTTATATGTAACTCTTTACATAAGTTTA----TATATCTTAAAGAGG 177 ||||||||||||||||||| |||| |||| |||| |||||||| ||| || Sbjct 45733 GTGGCTGTGGTATTTTATA-------GTTTAAATAATTTTATACTTATATCTTGAAGGGG 45681 Query 178 TATAGATA-GCATATAGGACTAGCTATAGAGCTAGTAGTGTATTGCTATAG 227 ||| ||| | ||||| |||||||| ||| ||| || | |||||||||| Sbjct 45680 AATAAATAGGGTTATAGCACTAGCTAGAGACCTAATAATAAATTGCTATAG 45630 >seq16437 Length=3918 Score = 91.5 bits (100), Expect = 2e-15 Identities = 189/287 (66%), Gaps = 51/287 (18%) Strand=Plus/Minus Query 88 ATTCTAGATTTTCCATAGCTCTATGCGTTTTCCCGTGGCTGTGGTATTTTATATGTAACT 147 ||||||||||| | |||||||||| || |||| ||||||||||| ||||||| Sbjct 1212 ATTCTAGATTTGCTATAGCTCTATACGATTTCTTGTGGCTGTGGTTATTTATAT------ 1159 Query 148 CTTTACATAAGTTTATATATCTTAAAGAGGTATAGATAGCATATAGGACTAGCTATAGAG 207 |||||||||||||| |||| | |||| |||||||||| || Sbjct 1158 --------------------CTTAAAGAGGTATAAATAGGAAATAGAACTAGCTATATAG 1119 Query 208 CTAGTAGTGTATTGCTATAGGAAAGGTCACTAGAGGCTATGTAAA--AATGTAGTATAAG 265 ||| | |||||| ||| | |||| | || || ||||| | |||||||| Sbjct 1118 TTAGAAATGTATTATAATAAGCGTAGTCATAAAAGTATA-GTAAATTATAATAGTATAA- 1061 Query 266 CATAAGCTGAGGTGGGATTGAAAATGGCAGCCACACCCGCCACACCTTAACTCTGCTGAT 325 |||||||||||| ||| || | || | ||| |||| || |||| || Sbjct 1060 TATAAGCTGAGGTTGGACTGGATATACCCGCC-CACCTGCTACAC---------GC---- 1015 Query 326 TTACCTGAGTATTTCGAGATGATCGAGGGCTCGTTGGATTCGTCTCG 372 || ||||||||||| ||| ||||||||| |||||||||| Sbjct 1014 -------AGACTTTCGAGATGAACGAAGGCTCGTTGAATTCGTCTCG 975 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7306796397544