Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Operophtera_20brumata_20[genbank_20GCA_5F001266575.1_202015-08-11]
25,801 sequences; 638,207,720 total letters
Query= NC_008865.1
Length=2358
Score E
Sequences producing significant alignments: (Bits) Value
seq6422 136 6e-29
seq9855 131 2e-27
seq2447 120 5e-24
seq16437 80.6 4e-12
>seq6422
Length=30189
Score = 136 bits (150), Expect = 6e-29
Identities = 187/255 (73%), Gaps = 11/255 (4%)
Strand=Plus/Minus
Query 1921 CTAGAATTCCTATAGCCTTATATTATTTCTCGAGGCTCTGGTACTTTATTATTAACTCTT 1980
||||| || | ||||| ||||||||||| || |||| ||||| ||||| ||||||||
Sbjct 21226 CTAGACTTACCATAGCTCTATATTATTTCCCGTGGCTGTGGTATTTTATATGTAACTCTT 21167
Query 1981 TTAATAATAATTTATATCTTAAAGAGGTATAAATAGTAAATAACATTAGCTATATAGCTA 2040
| |||| | |||||||||||||||||||||||| | ||| || ||||| | |||||
Sbjct 21166 TACATAAGTTTATATATCTTAAAGAGGTATAAATAGCATATAGTATAAGCTA-ACAGCTA 21108
Query 2041 GGAATATATTACTAT-GGTAATAGACACTATAGGCTATGGGAATAAATAGTATAAATATA 2099
| ||| |||| |||| || |||| || || | | ||| ||| | ||||||| | |||
Sbjct 21107 GAAATGTATTGCTATAGGGCATAGCCAATAAAAGTTATATGAAAATATAGTAT-AGCATA 21049
Query 2100 AGGTCCATGGGGATAGAAAAAC---GCTGCCAAACCCGCCA-CATTCGTCACACGGGCAC 2155
|| || || ||| | | ||||||| |||||||| || | || |||| ||
Sbjct 21048 AG----CTGAGGTGAGATGATCTGGGCTGCCACACCCGCCACCAATTTCCAATCGGGGAC 20993
Query 2156 TTCCAGTAGGAATTT 2170
||||||||| ||||
Sbjct 20992 TTCCAGTAGCCATTT 20978
>seq9855
Length=15086
Score = 131 bits (144), Expect = 2e-27
Identities = 184/252 (73%), Gaps = 5/252 (2%)
Strand=Plus/Minus
Query 1921 CTAGAATTCCTATAGCCTTATATTATTTCTCGAGGCTCTGGTACTTTATTATTAACTCTT 1980
||||| || | ||||| ||||||||||| || |||| ||||| ||||| ||||||||
Sbjct 3242 CTAGACTTACCATAGCTCTATATTATTTCCCGTGGCTGTGGTATTTTATATGTAACTCTT 3183
Query 1981 TTAATAATAATTTATATCTTAAAGAGGTATAAATAGTAAATAACATTAGCTATATAGCTA 2040
| |||| | |||||||||||||||||||||||| | ||| | ||||| | |||||
Sbjct 3182 TACATAAGTTTATATATCTTAAAGAGGTATAAATAGCATATAGTGTAAGCTA-ACAGCTA 3124
Query 2041 GGAATATATTACTAT-GGTAATAGACACTATAGGCTATGGGAATAAATAGTATAAATATA 2099
| ||| |||| |||| || |||| || || | | ||| ||| | ||||||| | |||
Sbjct 3123 GAAATGTATTGCTATAGGGCATAGCCAATAAAAGTTATATGAAAATATAGTAT-AGCATA 3065
Query 2100 AGGTCCATGGGGATAGAAAAACGCTGCCAAACCCGCCA-CATTCGTCACACGGGCACTTC 2158
|| | | ||| || ||||||| |||||||| || | || |||| |||||
Sbjct 3064 AGCTGAGGTGTGAT-GATCTGGGCTGCCACACCCGCCACCAATTTCCAATCGGGGACTTC 3006
Query 2159 CAGTAGGAATTT 2170
|||||| ||||
Sbjct 3005 CAGTAGCCATTT 2994
>seq2447
Length=64305
Score = 120 bits (132), Expect = 5e-24
Identities = 108/136 (79%), Gaps = 0/136 (0%)
Strand=Plus/Plus
Query 1916 CTAATCTAGAATTCCTATAGCCTTATATTATTTCTCGAGGCTCTGGTACTTTATTATTAA 1975
||| |||||| || ||||||| |||| |||||| | |||| |||| ||||| ||
Sbjct 3142 CTATTCTAGATTTGCTATAGCTCTATACGATTTCTTGTGGCTGTGGTTATTTATATCAAA 3201
Query 1976 CTCTTTTAATAATAATTTATATCTTAAAGAGGTATAAATAGTAAATAACATTAGCTATAT 2035
|||||| ||||| | |||||||||||||||||||||||| ||||| | |||||||||
Sbjct 3202 CTCTTTAAATAAGTTTATATATCTTAAAGAGGTATAAATAGGAAATAGAACTAGCTATAT 3261
Query 2036 AGCTAGGAATATATTA 2051
|| ||| ||| |||||
Sbjct 3262 AGTTAGAAATGTATTA 3277
>seq16437
Length=3918
Score = 80.6 bits (88), Expect = 4e-12
Identities = 55/62 (89%), Gaps = 0/62 (0%)
Strand=Plus/Minus
Query 1990 ATTTATATCTTAAAGAGGTATAAATAGTAAATAACATTAGCTATATAGCTAGGAATATAT 2049
||||||||||||||||||||||||||| ||||| | ||||||||||| ||| ||| |||
Sbjct 1166 ATTTATATCTTAAAGAGGTATAAATAGGAAATAGAACTAGCTATATAGTTAGAAATGTAT 1107
Query 2050 TA 2051
||
Sbjct 1106 TA 1105
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 7434761308184
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |