Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Operophtera_20brumata_20[genbank_20GCA_5F001266575.1_202015-08-11] 25,801 sequences; 638,207,720 total letters Query= NC_008865.1 Length=2358 Score E Sequences producing significant alignments: (Bits) Value seq6422 136 6e-29 seq9855 131 2e-27 seq2447 120 5e-24 seq16437 80.6 4e-12 >seq6422 Length=30189 Score = 136 bits (150), Expect = 6e-29 Identities = 187/255 (73%), Gaps = 11/255 (4%) Strand=Plus/Minus Query 1921 CTAGAATTCCTATAGCCTTATATTATTTCTCGAGGCTCTGGTACTTTATTATTAACTCTT 1980 ||||| || | ||||| ||||||||||| || |||| ||||| ||||| |||||||| Sbjct 21226 CTAGACTTACCATAGCTCTATATTATTTCCCGTGGCTGTGGTATTTTATATGTAACTCTT 21167 Query 1981 TTAATAATAATTTATATCTTAAAGAGGTATAAATAGTAAATAACATTAGCTATATAGCTA 2040 | |||| | |||||||||||||||||||||||| | ||| || ||||| | ||||| Sbjct 21166 TACATAAGTTTATATATCTTAAAGAGGTATAAATAGCATATAGTATAAGCTA-ACAGCTA 21108 Query 2041 GGAATATATTACTAT-GGTAATAGACACTATAGGCTATGGGAATAAATAGTATAAATATA 2099 | ||| |||| |||| || |||| || || | | ||| ||| | ||||||| | ||| Sbjct 21107 GAAATGTATTGCTATAGGGCATAGCCAATAAAAGTTATATGAAAATATAGTAT-AGCATA 21049 Query 2100 AGGTCCATGGGGATAGAAAAAC---GCTGCCAAACCCGCCA-CATTCGTCACACGGGCAC 2155 || || || ||| | | ||||||| |||||||| || | || |||| || Sbjct 21048 AG----CTGAGGTGAGATGATCTGGGCTGCCACACCCGCCACCAATTTCCAATCGGGGAC 20993 Query 2156 TTCCAGTAGGAATTT 2170 ||||||||| |||| Sbjct 20992 TTCCAGTAGCCATTT 20978 >seq9855 Length=15086 Score = 131 bits (144), Expect = 2e-27 Identities = 184/252 (73%), Gaps = 5/252 (2%) Strand=Plus/Minus Query 1921 CTAGAATTCCTATAGCCTTATATTATTTCTCGAGGCTCTGGTACTTTATTATTAACTCTT 1980 ||||| || | ||||| ||||||||||| || |||| ||||| ||||| |||||||| Sbjct 3242 CTAGACTTACCATAGCTCTATATTATTTCCCGTGGCTGTGGTATTTTATATGTAACTCTT 3183 Query 1981 TTAATAATAATTTATATCTTAAAGAGGTATAAATAGTAAATAACATTAGCTATATAGCTA 2040 | |||| | |||||||||||||||||||||||| | ||| | ||||| | ||||| Sbjct 3182 TACATAAGTTTATATATCTTAAAGAGGTATAAATAGCATATAGTGTAAGCTA-ACAGCTA 3124 Query 2041 GGAATATATTACTAT-GGTAATAGACACTATAGGCTATGGGAATAAATAGTATAAATATA 2099 | ||| |||| |||| || |||| || || | | ||| ||| | ||||||| | ||| Sbjct 3123 GAAATGTATTGCTATAGGGCATAGCCAATAAAAGTTATATGAAAATATAGTAT-AGCATA 3065 Query 2100 AGGTCCATGGGGATAGAAAAACGCTGCCAAACCCGCCA-CATTCGTCACACGGGCACTTC 2158 || | | ||| || ||||||| |||||||| || | || |||| ||||| Sbjct 3064 AGCTGAGGTGTGAT-GATCTGGGCTGCCACACCCGCCACCAATTTCCAATCGGGGACTTC 3006 Query 2159 CAGTAGGAATTT 2170 |||||| |||| Sbjct 3005 CAGTAGCCATTT 2994 >seq2447 Length=64305 Score = 120 bits (132), Expect = 5e-24 Identities = 108/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 1916 CTAATCTAGAATTCCTATAGCCTTATATTATTTCTCGAGGCTCTGGTACTTTATTATTAA 1975 ||| |||||| || ||||||| |||| |||||| | |||| |||| ||||| || Sbjct 3142 CTATTCTAGATTTGCTATAGCTCTATACGATTTCTTGTGGCTGTGGTTATTTATATCAAA 3201 Query 1976 CTCTTTTAATAATAATTTATATCTTAAAGAGGTATAAATAGTAAATAACATTAGCTATAT 2035 |||||| ||||| | |||||||||||||||||||||||| ||||| | ||||||||| Sbjct 3202 CTCTTTAAATAAGTTTATATATCTTAAAGAGGTATAAATAGGAAATAGAACTAGCTATAT 3261 Query 2036 AGCTAGGAATATATTA 2051 || ||| ||| ||||| Sbjct 3262 AGTTAGAAATGTATTA 3277 >seq16437 Length=3918 Score = 80.6 bits (88), Expect = 4e-12 Identities = 55/62 (89%), Gaps = 0/62 (0%) Strand=Plus/Minus Query 1990 ATTTATATCTTAAAGAGGTATAAATAGTAAATAACATTAGCTATATAGCTAGGAATATAT 2049 ||||||||||||||||||||||||||| ||||| | ||||||||||| ||| ||| ||| Sbjct 1166 ATTTATATCTTAAAGAGGTATAAATAGGAAATAGAACTAGCTATATAGTTAGAAATGTAT 1107 Query 2050 TA 2051 || Sbjct 1106 TA 1105 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7434761308184