Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Operophtera_20brumata_20[genbank_20GCA_5F001266575.1_202015-08-11] 25,801 sequences; 638,207,720 total letters Query= NC_008867.1 Length=2380 Score E Sequences producing significant alignments: (Bits) Value seq6422 223 5e-55 seq9855 219 6e-54 seq2447 172 8e-40 seq16437 114 2e-22 seq1896 104 4e-19 >seq6422 Length=30189 Score = 223 bits (246), Expect = 5e-55 Identities = 196/239 (82%), Gaps = 8/239 (3%) Strand=Plus/Plus Query 1391 GTGGCGGGTGTGGCTGCCATTCCCAGTCCCACCTCAGCTTATGCTTATACTATATTTTTA 1450 |||||||||||||| ||| || || |||||||||||||||| |||||||||||| | Sbjct 21011 GTGGCGGGTGTGGCAGCCCAGATCA-TCTCACCTCAGCTTATGCT-ATACTATATTTTCA 21068 Query 1451 CATAGCTTCTAGTGACCTTATA---TATAGCAATACACTACTAGCTCTATAGCTAGTCCT 1507 ||| ||| || || | ||| |||||||||||| | |||||| | ||||| | || Sbjct 21069 TATAACTTTTATTGGC--TATGCCCTATAGCAATACATTTCTAGCTGT-TAGCTTATACT 21125 Query 1508 ATATGCTATTTAAACCTCTTTAAGATATATAAACTTATGTAAAGAGTTATATATAAAATA 1567 |||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 21126 ATATGCTATTTATACCTCTTTAAGATATATAAACTTATGTAAAGAGTTACATATAAAATA 21185 Query 1568 CCACAGCCACAGGAAAACGTATAGAGCTATAGAAAATCTAGAATGAAAATGGCCAGCCA 1626 |||||||||| ||||| ||||||||||| | || ||||| | | ||| | |||||| Sbjct 21186 CCACAGCCACGGGAAATAATATAGAGCTATGGTAAGTCTAGTACTAGAATTGGCAGCCA 21244 >seq9855 Length=15086 Score = 219 bits (242), Expect = 6e-54 Identities = 202/250 (81%), Gaps = 8/250 (3%) Strand=Plus/Plus Query 1391 GTGGCGGGTGTGGCTGCCATTCCCAGTCCCACCTCAGCTTATGCTTATACTATATTTTTA 1450 |||||||||||||| ||| || || |||||||||||||||| |||||||||||| | Sbjct 3027 GTGGCGGGTGTGGCAGCCCAGATCA-TCACACCTCAGCTTATGCT-ATACTATATTTTCA 3084 Query 1451 CATAGCTTCTAGTGACCTTATA---TATAGCAATACACTACTAGCTCTATAGCTAGTCCT 1507 ||| ||| || || | ||| |||||||||||| | |||||| | ||||| || Sbjct 3085 TATAACTTTTATTGGC--TATGCCCTATAGCAATACATTTCTAGCTGT-TAGCTTACACT 3141 Query 1508 ATATGCTATTTAAACCTCTTTAAGATATATAAACTTATGTAAAGAGTTATATATAAAATA 1567 |||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 3142 ATATGCTATTTATACCTCTTTAAGATATATAAACTTATGTAAAGAGTTACATATAAAATA 3201 Query 1568 CCACAGCCACAGGAAAACGTATAGAGCTATAGAAAATCTAGAATGAAAATGGCCAGCCAT 1627 |||||||||| ||||| ||||||||||| | || ||||| | | ||| | |||||| Sbjct 3202 CCACAGCCACGGGAAATAATATAGAGCTATGGTAAGTCTAGTACTAGAATTGGCAGCCAC 3261 Query 1628 ATCAGCCACA 1637 | |||||| Sbjct 3262 GTTTGCCACA 3271 >seq2447 Length=64305 Score = 172 bits (190), Expect = 8e-40 Identities = 127/148 (86%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 1479 AATACACTACTAGCTCTATAGCTAGTCCTATATGCTATTTAAACCTCTTTAAGATATATA 1538 |||||| | ||| || |||||||||| |||| | ||||||| |||||||||||||||||| Sbjct 3276 AATACATTTCTAACTATATAGCTAGTTCTATTTCCTATTTATACCTCTTTAAGATATATA 3217 Query 1539 AACTTATGTAAAGAGTTATATATAAAATACCACAGCCACAGGAAAACGTATAGAGCTATA 1598 ||||||| ||||||||| ||||||| |||||||||||| |||| |||||||||||||| Sbjct 3216 AACTTATTTAAAGAGTTTGATATAAATAACCACAGCCACAAGAAATCGTATAGAGCTATA 3157 Query 1599 GAAAATCTAGAATGAAAATGGCCAGCCA 1626 | ||||||||||| | |||| | |||| Sbjct 3156 GCAAATCTAGAATAGAGATGGTCCGCCA 3129 >seq16437 Length=3918 Score = 114 bits (126), Expect = 2e-22 Identities = 222/328 (68%), Gaps = 61/328 (19%) Strand=Plus/Plus Query 1306 GGCTCATTGGATTCCGCTTGCTGAGACAAATCCAACAAGCCCTCGATCATCTCGAAGTAC 1365 ||||||| | |||| || ||||| ||| |||| |||| ||| |||||||||| Sbjct 954 GGCTCATCGTGTTCCTCTCATCGAGACGAATTCAACGAGCCTTCGTTCATCTCGAA---- 1009 Query 1366 TTGGGTGAAGTAACCGTGTTGCTGTGTGGCGGGTGTGGCTGCCATTCCCAGTCCCACCTC 1425 ||| ||||| || | ||||||| | || ||||||| ||||| Sbjct 1010 --------AGTCTGCGTGTAGCAGGTGGGCGGGTAT-------AT--CCAGTCCAACCTC 1052 Query 1426 AGCTTATGCTTATACTATATT--TTTAC-ATAGCTTCTAGTGAC----CTTATATATAGC 1478 ||||||| ||||||||| | ||||| ||| ||| || |||| ||||| |||| Sbjct 1053 AGCTTATA-TTATACTATTATAATTTACTATA-CTTTTA-TGACTACGCTTAT-TATA-- 1106 Query 1479 AATACACTACTAGCTCTATAGCTAGTCCTATATGCTATTTAAACCTCTTTAAGATATATA 1538 ||||| | ||| || |||||||||| |||| | ||||||| ||||||||||| Sbjct 1107 -ATACATTTCTAACTATATAGCTAGTTCTATTTCCTATTTATACCTCTTTAAG------- 1158 Query 1539 AACTTATGTAAAGAGTTATATATAAAATACCACAGCCACAGGAAAACGTATAGAGCTATA 1598 ||||||| |||||||||||| |||| |||||||||||||| Sbjct 1159 -------------------ATATAAATAACCACAGCCACAAGAAATCGTATAGAGCTATA 1199 Query 1599 GAAAATCTAGAATGAAAATGGCCAGCCA 1626 | ||||||||||| | |||| | |||| Sbjct 1200 GCAAATCTAGAATAGAGATGGTCCGCCA 1227 >seq1896 Length=105120 Score = 104 bits (114), Expect = 4e-19 Identities = 122/164 (74%), Gaps = 12/164 (7%) Strand=Plus/Plus Query 1460 TAGTGACCTTATATATAGCAATACACTACTAGCTCTATAGCTAGTCCTATATGC-TATTT 1518 || || | ||| ||||||||| | || ||| ||| |||||||| ||||| | ||||| Sbjct 45618 TAATGGCATTAACTATAGCAATTTATTATTAGGTCTCTAGCTAGTGCTATAACCCTATTT 45677 Query 1519 AAACCTCTTTAAGATATA----TAAACTTATGTAAAGAGTTATATATAAAATACCACAGC 1574 | || ||| |||||||| |||| |||| |||| |||||||||||||||| Sbjct 45678 ATTCCCCTTCAAGATATAAGTATAAAATTATTTAAAC-------TATAAAATACCACAGC 45730 Query 1575 CACAGGAAAACGTATAGAGCTATAGAAAATCTAGAATGAAAATG 1618 |||| |||| |||| |||||||| |||||||| || ||||| Sbjct 45731 CACAAGAAATTATATAAAGCTATAGTAAATCTAGGATAGAAATG 45774 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7505142009036