Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Operophtera_20brumata_20[genbank_20GCA_5F001266575.1_202015-08-11]
25,801 sequences; 638,207,720 total letters
Query= NC_008867.1
Length=2380
Score E
Sequences producing significant alignments: (Bits) Value
seq6422 223 5e-55
seq9855 219 6e-54
seq2447 172 8e-40
seq16437 114 2e-22
seq1896 104 4e-19
>seq6422
Length=30189
Score = 223 bits (246), Expect = 5e-55
Identities = 196/239 (82%), Gaps = 8/239 (3%)
Strand=Plus/Plus
Query 1391 GTGGCGGGTGTGGCTGCCATTCCCAGTCCCACCTCAGCTTATGCTTATACTATATTTTTA 1450
|||||||||||||| ||| || || |||||||||||||||| |||||||||||| |
Sbjct 21011 GTGGCGGGTGTGGCAGCCCAGATCA-TCTCACCTCAGCTTATGCT-ATACTATATTTTCA 21068
Query 1451 CATAGCTTCTAGTGACCTTATA---TATAGCAATACACTACTAGCTCTATAGCTAGTCCT 1507
||| ||| || || | ||| |||||||||||| | |||||| | ||||| | ||
Sbjct 21069 TATAACTTTTATTGGC--TATGCCCTATAGCAATACATTTCTAGCTGT-TAGCTTATACT 21125
Query 1508 ATATGCTATTTAAACCTCTTTAAGATATATAAACTTATGTAAAGAGTTATATATAAAATA 1567
|||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 21126 ATATGCTATTTATACCTCTTTAAGATATATAAACTTATGTAAAGAGTTACATATAAAATA 21185
Query 1568 CCACAGCCACAGGAAAACGTATAGAGCTATAGAAAATCTAGAATGAAAATGGCCAGCCA 1626
|||||||||| ||||| ||||||||||| | || ||||| | | ||| | ||||||
Sbjct 21186 CCACAGCCACGGGAAATAATATAGAGCTATGGTAAGTCTAGTACTAGAATTGGCAGCCA 21244
>seq9855
Length=15086
Score = 219 bits (242), Expect = 6e-54
Identities = 202/250 (81%), Gaps = 8/250 (3%)
Strand=Plus/Plus
Query 1391 GTGGCGGGTGTGGCTGCCATTCCCAGTCCCACCTCAGCTTATGCTTATACTATATTTTTA 1450
|||||||||||||| ||| || || |||||||||||||||| |||||||||||| |
Sbjct 3027 GTGGCGGGTGTGGCAGCCCAGATCA-TCACACCTCAGCTTATGCT-ATACTATATTTTCA 3084
Query 1451 CATAGCTTCTAGTGACCTTATA---TATAGCAATACACTACTAGCTCTATAGCTAGTCCT 1507
||| ||| || || | ||| |||||||||||| | |||||| | ||||| ||
Sbjct 3085 TATAACTTTTATTGGC--TATGCCCTATAGCAATACATTTCTAGCTGT-TAGCTTACACT 3141
Query 1508 ATATGCTATTTAAACCTCTTTAAGATATATAAACTTATGTAAAGAGTTATATATAAAATA 1567
|||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 3142 ATATGCTATTTATACCTCTTTAAGATATATAAACTTATGTAAAGAGTTACATATAAAATA 3201
Query 1568 CCACAGCCACAGGAAAACGTATAGAGCTATAGAAAATCTAGAATGAAAATGGCCAGCCAT 1627
|||||||||| ||||| ||||||||||| | || ||||| | | ||| | ||||||
Sbjct 3202 CCACAGCCACGGGAAATAATATAGAGCTATGGTAAGTCTAGTACTAGAATTGGCAGCCAC 3261
Query 1628 ATCAGCCACA 1637
| ||||||
Sbjct 3262 GTTTGCCACA 3271
>seq2447
Length=64305
Score = 172 bits (190), Expect = 8e-40
Identities = 127/148 (86%), Gaps = 0/148 (0%)
Strand=Plus/Minus
Query 1479 AATACACTACTAGCTCTATAGCTAGTCCTATATGCTATTTAAACCTCTTTAAGATATATA 1538
|||||| | ||| || |||||||||| |||| | ||||||| ||||||||||||||||||
Sbjct 3276 AATACATTTCTAACTATATAGCTAGTTCTATTTCCTATTTATACCTCTTTAAGATATATA 3217
Query 1539 AACTTATGTAAAGAGTTATATATAAAATACCACAGCCACAGGAAAACGTATAGAGCTATA 1598
||||||| ||||||||| ||||||| |||||||||||| |||| ||||||||||||||
Sbjct 3216 AACTTATTTAAAGAGTTTGATATAAATAACCACAGCCACAAGAAATCGTATAGAGCTATA 3157
Query 1599 GAAAATCTAGAATGAAAATGGCCAGCCA 1626
| ||||||||||| | |||| | ||||
Sbjct 3156 GCAAATCTAGAATAGAGATGGTCCGCCA 3129
>seq16437
Length=3918
Score = 114 bits (126), Expect = 2e-22
Identities = 222/328 (68%), Gaps = 61/328 (19%)
Strand=Plus/Plus
Query 1306 GGCTCATTGGATTCCGCTTGCTGAGACAAATCCAACAAGCCCTCGATCATCTCGAAGTAC 1365
||||||| | |||| || ||||| ||| |||| |||| ||| ||||||||||
Sbjct 954 GGCTCATCGTGTTCCTCTCATCGAGACGAATTCAACGAGCCTTCGTTCATCTCGAA---- 1009
Query 1366 TTGGGTGAAGTAACCGTGTTGCTGTGTGGCGGGTGTGGCTGCCATTCCCAGTCCCACCTC 1425
||| ||||| || | ||||||| | || ||||||| |||||
Sbjct 1010 --------AGTCTGCGTGTAGCAGGTGGGCGGGTAT-------AT--CCAGTCCAACCTC 1052
Query 1426 AGCTTATGCTTATACTATATT--TTTAC-ATAGCTTCTAGTGAC----CTTATATATAGC 1478
||||||| ||||||||| | ||||| ||| ||| || |||| ||||| ||||
Sbjct 1053 AGCTTATA-TTATACTATTATAATTTACTATA-CTTTTA-TGACTACGCTTAT-TATA-- 1106
Query 1479 AATACACTACTAGCTCTATAGCTAGTCCTATATGCTATTTAAACCTCTTTAAGATATATA 1538
||||| | ||| || |||||||||| |||| | ||||||| |||||||||||
Sbjct 1107 -ATACATTTCTAACTATATAGCTAGTTCTATTTCCTATTTATACCTCTTTAAG------- 1158
Query 1539 AACTTATGTAAAGAGTTATATATAAAATACCACAGCCACAGGAAAACGTATAGAGCTATA 1598
||||||| |||||||||||| |||| ||||||||||||||
Sbjct 1159 -------------------ATATAAATAACCACAGCCACAAGAAATCGTATAGAGCTATA 1199
Query 1599 GAAAATCTAGAATGAAAATGGCCAGCCA 1626
| ||||||||||| | |||| | ||||
Sbjct 1200 GCAAATCTAGAATAGAGATGGTCCGCCA 1227
>seq1896
Length=105120
Score = 104 bits (114), Expect = 4e-19
Identities = 122/164 (74%), Gaps = 12/164 (7%)
Strand=Plus/Plus
Query 1460 TAGTGACCTTATATATAGCAATACACTACTAGCTCTATAGCTAGTCCTATATGC-TATTT 1518
|| || | ||| ||||||||| | || ||| ||| |||||||| ||||| | |||||
Sbjct 45618 TAATGGCATTAACTATAGCAATTTATTATTAGGTCTCTAGCTAGTGCTATAACCCTATTT 45677
Query 1519 AAACCTCTTTAAGATATA----TAAACTTATGTAAAGAGTTATATATAAAATACCACAGC 1574
| || ||| |||||||| |||| |||| |||| ||||||||||||||||
Sbjct 45678 ATTCCCCTTCAAGATATAAGTATAAAATTATTTAAAC-------TATAAAATACCACAGC 45730
Query 1575 CACAGGAAAACGTATAGAGCTATAGAAAATCTAGAATGAAAATG 1618
|||| |||| |||| |||||||| |||||||| || |||||
Sbjct 45731 CACAAGAAATTATATAAAGCTATAGTAAATCTAGGATAGAAATG 45774
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 7505142009036
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |