Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Operophtera_20brumata_20[genbank_20GCA_5F001266575.1_202015-08-11]
25,801 sequences; 638,207,720 total letters
Query= NC_008869.1
Length=2408
Score E
Sequences producing significant alignments: (Bits) Value
seq6422 183 5e-43
seq9855 174 2e-40
seq2447 167 4e-38
seq1896 102 1e-18
>seq6422
Length=30189
Score = 183 bits (202), Expect = 5e-43
Identities = 239/318 (75%), Gaps = 12/318 (4%)
Strand=Plus/Minus
Query 1200 TTCTATT-CTAGATTTGCTATAGCCTTATACGATTTTTCATGGCTGTGGTATTTTATATA 1258
||||| | ||||| || | ||||| |||| |||| | |||||||||||||||||||
Sbjct 21234 TTCTAGTACTAGACTTACCATAGCTCTATATTATTTCCCGTGGCTGTGGTATTTTATATG 21175
Query 1259 TAACTCTTTACATAAGTTtatatatcttaaaaaggcataaataggatataaaactagcta 1318
||||||||||||||||||||||||||||||| ||| |||||||| ||||| | |||||
Sbjct 21174 TAACTCTTTACATAAGTTTATATATCTTAAAGAGGTATAAATAGCATATAGTATAAGCTA 21115
Query 1319 tataaccataaatatattgctataggtgc--agccagt-aaagatatgataaatatatat 1375
| | | | |||| |||||||||||| || ||||| | |||| ||| || | | ||||
Sbjct 21114 -ACAGCTAGAAATGTATTGCTATAGG-GCATAGCCAATAAAAGTTAT-ATGA--AAATAT 21060
Query 1376 agtataaatataaGCTGCGGTGAGACTGGAAATGGCCGCCACACCCGCCA-CAATTGCGC 1434
||||| | |||||||| ||||||| || ||| ||||||||||||| ||||| |
Sbjct 21059 AGTAT-AGCATAAGCTGAGGTGAGA-TGATCTGGGCTGCCACACCCGCCACCAATTTCCA 21002
Query 1435 TCAGGCCACTTTCAGTTGAAATTTCAAGATTACCGAGAGCTCGTTGGATTCATCTTGGCG 1494
|| |||| |||| | |||| | ||| | | |||||||||| ||||| ||
Sbjct 21001 ATCGGGGACTTCCAGTAGCCATTTTTGGTCGACCATGGACCCGTTGGATTCGTCTTGACG 20942
Query 1495 TGTGAAATCCAATGTGCC 1512
| | ||||| ||| |||
Sbjct 20941 CGAGGAATCCGATGAGCC 20924
>seq9855
Length=15086
Score = 174 bits (192), Expect = 2e-40
Identities = 237/318 (75%), Gaps = 12/318 (4%)
Strand=Plus/Minus
Query 1200 TTCTATT-CTAGATTTGCTATAGCCTTATACGATTTTTCATGGCTGTGGTATTTTATATA 1258
||||| | ||||| || | ||||| |||| |||| | |||||||||||||||||||
Sbjct 3250 TTCTAGTACTAGACTTACCATAGCTCTATATTATTTCCCGTGGCTGTGGTATTTTATATG 3191
Query 1259 TAACTCTTTACATAAGTTtatatatcttaaaaaggcataaataggatataaaactagcta 1318
||||||||||||||||||||||||||||||| ||| |||||||| ||||| |||||
Sbjct 3190 TAACTCTTTACATAAGTTTATATATCTTAAAGAGGTATAAATAGCATATAGTGTAAGCTA 3131
Query 1319 tataaccataaatatattgctataggtgc--agccagt-aaagatatgataaatatatat 1375
| | | | |||| |||||||||||| || ||||| | |||| ||| || | | ||||
Sbjct 3130 -ACAGCTAGAAATGTATTGCTATAGG-GCATAGCCAATAAAAGTTAT-ATGA--AAATAT 3076
Query 1376 agtataaatataaGCTGCGGTGAGACTGGAAATGGCCGCCACACCCGCCA-CAATTGCGC 1434
||||| | |||||||| |||| || || ||| ||||||||||||| ||||| |
Sbjct 3075 AGTAT-AGCATAAGCTGAGGTGTGA-TGATCTGGGCTGCCACACCCGCCACCAATTTCCA 3018
Query 1435 TCAGGCCACTTTCAGTTGAAATTTCAAGATTACCGAGAGCTCGTTGGATTCATCTTGGCG 1494
|| |||| |||| | |||| | ||| | | |||||||||| ||||| ||
Sbjct 3017 ATCGGGGACTTCCAGTAGCCATTTTTGGTCGACCATGGACCCGTTGGATTCGTCTTGACG 2958
Query 1495 TGTGAAATCCAATGTGCC 1512
| | ||||| ||| |||
Sbjct 2957 CGAGGAATCCGATGAGCC 2940
>seq2447
Length=64305
Score = 167 bits (184), Expect = 4e-38
Identities = 149/183 (81%), Gaps = 3/183 (2%)
Strand=Plus/Plus
Query 1201 TCTATTCTAGATTTGCTATAGCCTTATACGATTTTTCATGGCTGTGGTATTTTATATATA 1260
|||||||||||||||||||||| |||||||||| | |||||||||| ||||||| |
Sbjct 3141 TCTATTCTAGATTTGCTATAGCTCTATACGATTTCTTGTGGCTGTGGTTATTTATATCAA 3200
Query 1261 ACTCTTTACATAAGTTtatatatcttaaaaaggcataaataggatataaaactagctata 1320
|||||||| |||||||||||||||||||| ||| |||||||||| ||| |||||||||||
Sbjct 3201 ACTCTTTAAATAAGTTTATATATCTTAAAGAGGTATAAATAGGAAATAGAACTAGCTATA 3260
Query 1321 taaccataaatatattgctataggtgcagccagtaaagatatgataaa-tatatatagta 1379
|| | |||| |||| ||| | | || || || | ||| |||| |||| ||||||
Sbjct 3261 TAGTTAGAAATGTATTATAATAAGCGTAGTCA-TATAAGTATAGTAAATTATA-ATAGTA 3318
Query 1380 taa 1382
|||
Sbjct 3319 TAA 3321
>seq1896
Length=105120
Score = 102 bits (112), Expect = 1e-18
Identities = 113/150 (75%), Gaps = 12/150 (8%)
Strand=Plus/Minus
Query 1199 TTTCTATTCTAGATTTGCTATAGCCTTATACGATTTTTCATGGCTGTGGTATTTTATATA 1258
||||||| |||||||| ||||||| ||||| |||| | ||||||||||||||||||
Sbjct 45772 TTTCTATCCTAGATTTACTATAGCTTTATATAATTTCTTGTGGCTGTGGTATTTTATA-- 45715
Query 1259 TAACTCTTTACATAAGTTta----tatatcttaaaaaggcataaata-ggatataaaact 1313
|||| |||| |||| |||||||| || || ||||||| || |||| |||
Sbjct 45714 -----GTTTAAATAATTTTATACTTATATCTTGAAGGGGAATAAATAGGGTTATAGCACT 45660
Query 1314 agctatataaccataaatatattgctatag 1343
||||| | | | | |||| ||||||||||
Sbjct 45659 AGCTAGAGACCTAATAATAAATTGCTATAG 45630
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 7594717446484
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |