Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Operophtera_20brumata_20[genbank_20GCA_5F001266575.1_202015-08-11] 25,801 sequences; 638,207,720 total letters Query= NC_008869.1 Length=2408 Score E Sequences producing significant alignments: (Bits) Value seq6422 183 5e-43 seq9855 174 2e-40 seq2447 167 4e-38 seq1896 102 1e-18 >seq6422 Length=30189 Score = 183 bits (202), Expect = 5e-43 Identities = 239/318 (75%), Gaps = 12/318 (4%) Strand=Plus/Minus Query 1200 TTCTATT-CTAGATTTGCTATAGCCTTATACGATTTTTCATGGCTGTGGTATTTTATATA 1258 ||||| | ||||| || | ||||| |||| |||| | ||||||||||||||||||| Sbjct 21234 TTCTAGTACTAGACTTACCATAGCTCTATATTATTTCCCGTGGCTGTGGTATTTTATATG 21175 Query 1259 TAACTCTTTACATAAGTTtatatatcttaaaaaggcataaataggatataaaactagcta 1318 ||||||||||||||||||||||||||||||| ||| |||||||| ||||| | ||||| Sbjct 21174 TAACTCTTTACATAAGTTTATATATCTTAAAGAGGTATAAATAGCATATAGTATAAGCTA 21115 Query 1319 tataaccataaatatattgctataggtgc--agccagt-aaagatatgataaatatatat 1375 | | | | |||| |||||||||||| || ||||| | |||| ||| || | | |||| Sbjct 21114 -ACAGCTAGAAATGTATTGCTATAGG-GCATAGCCAATAAAAGTTAT-ATGA--AAATAT 21060 Query 1376 agtataaatataaGCTGCGGTGAGACTGGAAATGGCCGCCACACCCGCCA-CAATTGCGC 1434 ||||| | |||||||| ||||||| || ||| ||||||||||||| ||||| | Sbjct 21059 AGTAT-AGCATAAGCTGAGGTGAGA-TGATCTGGGCTGCCACACCCGCCACCAATTTCCA 21002 Query 1435 TCAGGCCACTTTCAGTTGAAATTTCAAGATTACCGAGAGCTCGTTGGATTCATCTTGGCG 1494 || |||| |||| | |||| | ||| | | |||||||||| ||||| || Sbjct 21001 ATCGGGGACTTCCAGTAGCCATTTTTGGTCGACCATGGACCCGTTGGATTCGTCTTGACG 20942 Query 1495 TGTGAAATCCAATGTGCC 1512 | | ||||| ||| ||| Sbjct 20941 CGAGGAATCCGATGAGCC 20924 >seq9855 Length=15086 Score = 174 bits (192), Expect = 2e-40 Identities = 237/318 (75%), Gaps = 12/318 (4%) Strand=Plus/Minus Query 1200 TTCTATT-CTAGATTTGCTATAGCCTTATACGATTTTTCATGGCTGTGGTATTTTATATA 1258 ||||| | ||||| || | ||||| |||| |||| | ||||||||||||||||||| Sbjct 3250 TTCTAGTACTAGACTTACCATAGCTCTATATTATTTCCCGTGGCTGTGGTATTTTATATG 3191 Query 1259 TAACTCTTTACATAAGTTtatatatcttaaaaaggcataaataggatataaaactagcta 1318 ||||||||||||||||||||||||||||||| ||| |||||||| ||||| ||||| Sbjct 3190 TAACTCTTTACATAAGTTTATATATCTTAAAGAGGTATAAATAGCATATAGTGTAAGCTA 3131 Query 1319 tataaccataaatatattgctataggtgc--agccagt-aaagatatgataaatatatat 1375 | | | | |||| |||||||||||| || ||||| | |||| ||| || | | |||| Sbjct 3130 -ACAGCTAGAAATGTATTGCTATAGG-GCATAGCCAATAAAAGTTAT-ATGA--AAATAT 3076 Query 1376 agtataaatataaGCTGCGGTGAGACTGGAAATGGCCGCCACACCCGCCA-CAATTGCGC 1434 ||||| | |||||||| |||| || || ||| ||||||||||||| ||||| | Sbjct 3075 AGTAT-AGCATAAGCTGAGGTGTGA-TGATCTGGGCTGCCACACCCGCCACCAATTTCCA 3018 Query 1435 TCAGGCCACTTTCAGTTGAAATTTCAAGATTACCGAGAGCTCGTTGGATTCATCTTGGCG 1494 || |||| |||| | |||| | ||| | | |||||||||| ||||| || Sbjct 3017 ATCGGGGACTTCCAGTAGCCATTTTTGGTCGACCATGGACCCGTTGGATTCGTCTTGACG 2958 Query 1495 TGTGAAATCCAATGTGCC 1512 | | ||||| ||| ||| Sbjct 2957 CGAGGAATCCGATGAGCC 2940 >seq2447 Length=64305 Score = 167 bits (184), Expect = 4e-38 Identities = 149/183 (81%), Gaps = 3/183 (2%) Strand=Plus/Plus Query 1201 TCTATTCTAGATTTGCTATAGCCTTATACGATTTTTCATGGCTGTGGTATTTTATATATA 1260 |||||||||||||||||||||| |||||||||| | |||||||||| ||||||| | Sbjct 3141 TCTATTCTAGATTTGCTATAGCTCTATACGATTTCTTGTGGCTGTGGTTATTTATATCAA 3200 Query 1261 ACTCTTTACATAAGTTtatatatcttaaaaaggcataaataggatataaaactagctata 1320 |||||||| |||||||||||||||||||| ||| |||||||||| ||| ||||||||||| Sbjct 3201 ACTCTTTAAATAAGTTTATATATCTTAAAGAGGTATAAATAGGAAATAGAACTAGCTATA 3260 Query 1321 taaccataaatatattgctataggtgcagccagtaaagatatgataaa-tatatatagta 1379 || | |||| |||| ||| | | || || || | ||| |||| |||| |||||| Sbjct 3261 TAGTTAGAAATGTATTATAATAAGCGTAGTCA-TATAAGTATAGTAAATTATA-ATAGTA 3318 Query 1380 taa 1382 ||| Sbjct 3319 TAA 3321 >seq1896 Length=105120 Score = 102 bits (112), Expect = 1e-18 Identities = 113/150 (75%), Gaps = 12/150 (8%) Strand=Plus/Minus Query 1199 TTTCTATTCTAGATTTGCTATAGCCTTATACGATTTTTCATGGCTGTGGTATTTTATATA 1258 ||||||| |||||||| ||||||| ||||| |||| | |||||||||||||||||| Sbjct 45772 TTTCTATCCTAGATTTACTATAGCTTTATATAATTTCTTGTGGCTGTGGTATTTTATA-- 45715 Query 1259 TAACTCTTTACATAAGTTta----tatatcttaaaaaggcataaata-ggatataaaact 1313 |||| |||| |||| |||||||| || || ||||||| || |||| ||| Sbjct 45714 -----GTTTAAATAATTTTATACTTATATCTTGAAGGGGAATAAATAGGGTTATAGCACT 45660 Query 1314 agctatataaccataaatatattgctatag 1343 ||||| | | | | |||| |||||||||| Sbjct 45659 AGCTAGAGACCTAATAATAAATTGCTATAG 45630 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7594717446484