Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Operophtera_20brumata_20[genbank_20GCA_5F001266575.1_202015-08-11] 25,801 sequences; 638,207,720 total letters Query= NC_008870.1 Length=2415 Score E Sequences producing significant alignments: (Bits) Value seq6422 161 2e-36 seq9855 152 8e-34 seq16437 109 8e-21 seq2447 107 3e-20 seq7981 98.7 2e-17 seq6263 98.7 2e-17 >seq6422 Length=30189 Score = 161 bits (178), Expect = 2e-36 Identities = 220/296 (74%), Gaps = 12/296 (4%) Strand=Plus/Plus Query 2125 GGCTGTTGAAATTCCCCCTTAAGGGTCACTCCATTGAGATTGGTCTGATTTGATTGCATA 2184 || ||| |||| | ||||| | |||||| | | |||| | || || |||| | Sbjct 20882 GGTTGTAGAAAGTTACCCTTCAAGGTCACCCTCCCGTGATTAGGCTCATCGGATTCCTCG 20941 Query 2185 CGCCAAGACGAAACCAATGAGCTCTCAT--TCATTTCGAAATTACAACCGGAAGTACCTG 2242 || ||||||||| |||| | | || ||| || |||| | || |||||| || | Sbjct 20942 CGTCAAGACGAATCCAACGGG-TC-CATGGTCGACCAAAAATGGCTACTGGAAGTCCCCG 20999 Query 2243 ATCGACAAT--GTGGCGGGTGTGGCAGCCATCTCCAGTCTTACCGCAGCTTATATTCATA 2300 || | ||| |||||||||||||||||| || ||| ||| |||||||| | ||| Sbjct 21000 ATTGGAAATTGGTGGCGGGTGTGGCAGCCCAGATCA-TCTCACCTCAGCTTATGCT-ATA 21057 Query 2301 CTATATATATTCCTATAGTCTTTACTGGCTCTACC-TATAGCAATATATTTCTAGCTCTA 2359 |||||| | || |||| |||| ||||| | || |||||||||| |||||||||| | Sbjct 21058 CTATATTT--TCATATAACTTTTATTGGCTATGCCCTATAGCAATACATTTCTAGCTGT- 21114 Query 2360 TAGCTAGTCCTATATGCTATTTATACCTCTTTAAGATATATAAACTTATTTAAAGA 2415 ||||| | |||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 21115 TAGCTTATACTATATGCTATTTATACCTCTTTAAGATATATAAACTTATGTAAAGA 21170 >seq9855 Length=15086 Score = 152 bits (168), Expect = 8e-34 Identities = 218/296 (74%), Gaps = 12/296 (4%) Strand=Plus/Plus Query 2125 GGCTGTTGAAATTCCCCCTTAAGGGTCACTCCATTGAGATTGGTCTGATTTGATTGCATA 2184 || ||| |||| | ||||| | |||||| | | |||| | || || |||| | Sbjct 2898 GGTTGTAGAAAGTTACCCTTCAAGGTCACCCTCCCGTGATTAGGCTCATCGGATTCCTCG 2957 Query 2185 CGCCAAGACGAAACCAATGAGCTCTCAT--TCATTTCGAAATTACAACCGGAAGTACCTG 2242 || ||||||||| |||| | | || ||| || |||| | || |||||| || | Sbjct 2958 CGTCAAGACGAATCCAACGGG-TC-CATGGTCGACCAAAAATGGCTACTGGAAGTCCCCG 3015 Query 2243 ATCGACAAT--GTGGCGGGTGTGGCAGCCATCTCCAGTCTTACCGCAGCTTATATTCATA 2300 || | ||| |||||||||||||||||| || || ||| |||||||| | ||| Sbjct 3016 ATTGGAAATTGGTGGCGGGTGTGGCAGCCCAGATCA-TCACACCTCAGCTTATGCT-ATA 3073 Query 2301 CTATATATATTCCTATAGTCTTTACTGGCTCTACC-TATAGCAATATATTTCTAGCTCTA 2359 |||||| | || |||| |||| ||||| | || |||||||||| |||||||||| | Sbjct 3074 CTATATTT--TCATATAACTTTTATTGGCTATGCCCTATAGCAATACATTTCTAGCTGT- 3130 Query 2360 TAGCTAGTCCTATATGCTATTTATACCTCTTTAAGATATATAAACTTATTTAAAGA 2415 ||||| |||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 3131 TAGCTTACACTATATGCTATTTATACCTCTTTAAGATATATAAACTTATGTAAAGA 3186 >seq16437 Length=3918 Score = 109 bits (120), Expect = 8e-21 Identities = 118/150 (79%), Gaps = 5/150 (3%) Strand=Plus/Plus Query 2251 TGTGGCGGGTGTGGCAGCCATCTCCAGTCTTACCGCAGCTTATATTCATACTAT-ATATA 2309 ||| || |||| ||| | || ||||||| ||| ||||||||||| ||||||| ||| Sbjct 1018 TGTAGCAGGTG-GGCGGGTATATCCAGTCCAACCTCAGCTTATATT-ATACTATTATAAT 1075 Query 2310 TTCCTATAGTCTTTACTGGCTCTACCTATAGCAATATATTTCTAGCTCTATAGCTAGTCC 2369 || ||||| | |||| || || | ||| |||| ||||||| || |||||||||| | Sbjct 1076 TTACTATACT-TTTA-TGACTACGCTTATTATAATACATTTCTAACTATATAGCTAGTTC 1133 Query 2370 TATATGCTATTTATACCTCTTTAAGATATA 2399 ||| | |||||||||||||||||||||||| Sbjct 1134 TATTTCCTATTTATACCTCTTTAAGATATA 1163 >seq2447 Length=64305 Score = 107 bits (118), Expect = 3e-20 Identities = 68/74 (92%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 2342 AATATATTTCTAGCTCTATAGCTAGTCCTATATGCTATTTATACCTCTTTAAGATATATA 2401 |||| ||||||| || |||||||||| |||| | |||||||||||||||||||||||||| Sbjct 3276 AATACATTTCTAACTATATAGCTAGTTCTATTTCCTATTTATACCTCTTTAAGATATATA 3217 Query 2402 AACTTATTTAAAGA 2415 |||||||||||||| Sbjct 3216 AACTTATTTAAAGA 3203 >seq7981 Length=21338 Score = 98.7 bits (108), Expect = 2e-17 Identities = 97/125 (78%), Gaps = 4/125 (3%) Strand=Plus/Plus Query 2286 CAGCTTATATTCATACTATATATATTCCTATAGTCTTTACTGGCTCTACCTATAGCAATA 2345 ||| ||||||| |||| |||||||||||||| |||| |||| ||||| ||| ||| Sbjct 10199 CAGTTTATATTTATACACCATATATTCCTATAGCTTTTAACGGCTATACCTTTAGTTATA 10258 Query 2346 TATTTCTAGC----TCTATAGCTAGTCCTATATGCTATTTATACCTCTTTAAGATATATA 2401 |||||||| ||||||||| | | |||| |||||| || ||||||| ||||| || Sbjct 10259 CCTTTCTAGCCACACCTATAGCTAATACCATATCCTATTTCTATCTCTTTAGGATATTTA 10318 Query 2402 AACTT 2406 ||||| Sbjct 10319 AACTT 10323 >seq6263 Length=31128 Score = 98.7 bits (108), Expect = 2e-17 Identities = 98/127 (77%), Gaps = 4/127 (3%) Strand=Plus/Minus Query 2272 CTCCAGTCTTACCGCAGCTTATATTCATACTATATATATTCCTATAGTCTTTA----CTG 2327 || |||||| | | ||||||||||| ||| ||||||||| ||||| |||| || Sbjct 12786 CTGCAGTCTCATCACAGCTTATATTTATATACTATATATTCGTATAGCTTTTAACGGCTA 12727 Query 2328 GCTCTACCTATAGCAATATATTTCTAGCTCTATAGCTAGTCCTATATGCTATTTATACCT 2387 || ||||| |||| ||| |||||||| |||||||| | | |||| ||||||||| || Sbjct 12726 CCTATACCTTTAGCTATACCTTTCTAGCCATATAGCTAATACCATATCCTATTTATATCT 12667 Query 2388 CTTTAAG 2394 ||||||| Sbjct 12666 CTTTAAG 12660 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7617111305846