Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Operophtera_20brumata_20[genbank_20GCA_5F001266575.1_202015-08-11]
25,801 sequences; 638,207,720 total letters
Query= NC_008870.1
Length=2415
Score E
Sequences producing significant alignments: (Bits) Value
seq6422 161 2e-36
seq9855 152 8e-34
seq16437 109 8e-21
seq2447 107 3e-20
seq7981 98.7 2e-17
seq6263 98.7 2e-17
>seq6422
Length=30189
Score = 161 bits (178), Expect = 2e-36
Identities = 220/296 (74%), Gaps = 12/296 (4%)
Strand=Plus/Plus
Query 2125 GGCTGTTGAAATTCCCCCTTAAGGGTCACTCCATTGAGATTGGTCTGATTTGATTGCATA 2184
|| ||| |||| | ||||| | |||||| | | |||| | || || |||| |
Sbjct 20882 GGTTGTAGAAAGTTACCCTTCAAGGTCACCCTCCCGTGATTAGGCTCATCGGATTCCTCG 20941
Query 2185 CGCCAAGACGAAACCAATGAGCTCTCAT--TCATTTCGAAATTACAACCGGAAGTACCTG 2242
|| ||||||||| |||| | | || ||| || |||| | || |||||| || |
Sbjct 20942 CGTCAAGACGAATCCAACGGG-TC-CATGGTCGACCAAAAATGGCTACTGGAAGTCCCCG 20999
Query 2243 ATCGACAAT--GTGGCGGGTGTGGCAGCCATCTCCAGTCTTACCGCAGCTTATATTCATA 2300
|| | ||| |||||||||||||||||| || ||| ||| |||||||| | |||
Sbjct 21000 ATTGGAAATTGGTGGCGGGTGTGGCAGCCCAGATCA-TCTCACCTCAGCTTATGCT-ATA 21057
Query 2301 CTATATATATTCCTATAGTCTTTACTGGCTCTACC-TATAGCAATATATTTCTAGCTCTA 2359
|||||| | || |||| |||| ||||| | || |||||||||| |||||||||| |
Sbjct 21058 CTATATTT--TCATATAACTTTTATTGGCTATGCCCTATAGCAATACATTTCTAGCTGT- 21114
Query 2360 TAGCTAGTCCTATATGCTATTTATACCTCTTTAAGATATATAAACTTATTTAAAGA 2415
||||| | |||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 21115 TAGCTTATACTATATGCTATTTATACCTCTTTAAGATATATAAACTTATGTAAAGA 21170
>seq9855
Length=15086
Score = 152 bits (168), Expect = 8e-34
Identities = 218/296 (74%), Gaps = 12/296 (4%)
Strand=Plus/Plus
Query 2125 GGCTGTTGAAATTCCCCCTTAAGGGTCACTCCATTGAGATTGGTCTGATTTGATTGCATA 2184
|| ||| |||| | ||||| | |||||| | | |||| | || || |||| |
Sbjct 2898 GGTTGTAGAAAGTTACCCTTCAAGGTCACCCTCCCGTGATTAGGCTCATCGGATTCCTCG 2957
Query 2185 CGCCAAGACGAAACCAATGAGCTCTCAT--TCATTTCGAAATTACAACCGGAAGTACCTG 2242
|| ||||||||| |||| | | || ||| || |||| | || |||||| || |
Sbjct 2958 CGTCAAGACGAATCCAACGGG-TC-CATGGTCGACCAAAAATGGCTACTGGAAGTCCCCG 3015
Query 2243 ATCGACAAT--GTGGCGGGTGTGGCAGCCATCTCCAGTCTTACCGCAGCTTATATTCATA 2300
|| | ||| |||||||||||||||||| || || ||| |||||||| | |||
Sbjct 3016 ATTGGAAATTGGTGGCGGGTGTGGCAGCCCAGATCA-TCACACCTCAGCTTATGCT-ATA 3073
Query 2301 CTATATATATTCCTATAGTCTTTACTGGCTCTACC-TATAGCAATATATTTCTAGCTCTA 2359
|||||| | || |||| |||| ||||| | || |||||||||| |||||||||| |
Sbjct 3074 CTATATTT--TCATATAACTTTTATTGGCTATGCCCTATAGCAATACATTTCTAGCTGT- 3130
Query 2360 TAGCTAGTCCTATATGCTATTTATACCTCTTTAAGATATATAAACTTATTTAAAGA 2415
||||| |||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 3131 TAGCTTACACTATATGCTATTTATACCTCTTTAAGATATATAAACTTATGTAAAGA 3186
>seq16437
Length=3918
Score = 109 bits (120), Expect = 8e-21
Identities = 118/150 (79%), Gaps = 5/150 (3%)
Strand=Plus/Plus
Query 2251 TGTGGCGGGTGTGGCAGCCATCTCCAGTCTTACCGCAGCTTATATTCATACTAT-ATATA 2309
||| || |||| ||| | || ||||||| ||| ||||||||||| ||||||| |||
Sbjct 1018 TGTAGCAGGTG-GGCGGGTATATCCAGTCCAACCTCAGCTTATATT-ATACTATTATAAT 1075
Query 2310 TTCCTATAGTCTTTACTGGCTCTACCTATAGCAATATATTTCTAGCTCTATAGCTAGTCC 2369
|| ||||| | |||| || || | ||| |||| ||||||| || |||||||||| |
Sbjct 1076 TTACTATACT-TTTA-TGACTACGCTTATTATAATACATTTCTAACTATATAGCTAGTTC 1133
Query 2370 TATATGCTATTTATACCTCTTTAAGATATA 2399
||| | ||||||||||||||||||||||||
Sbjct 1134 TATTTCCTATTTATACCTCTTTAAGATATA 1163
>seq2447
Length=64305
Score = 107 bits (118), Expect = 3e-20
Identities = 68/74 (92%), Gaps = 0/74 (0%)
Strand=Plus/Minus
Query 2342 AATATATTTCTAGCTCTATAGCTAGTCCTATATGCTATTTATACCTCTTTAAGATATATA 2401
|||| ||||||| || |||||||||| |||| | ||||||||||||||||||||||||||
Sbjct 3276 AATACATTTCTAACTATATAGCTAGTTCTATTTCCTATTTATACCTCTTTAAGATATATA 3217
Query 2402 AACTTATTTAAAGA 2415
||||||||||||||
Sbjct 3216 AACTTATTTAAAGA 3203
>seq7981
Length=21338
Score = 98.7 bits (108), Expect = 2e-17
Identities = 97/125 (78%), Gaps = 4/125 (3%)
Strand=Plus/Plus
Query 2286 CAGCTTATATTCATACTATATATATTCCTATAGTCTTTACTGGCTCTACCTATAGCAATA 2345
||| ||||||| |||| |||||||||||||| |||| |||| ||||| ||| |||
Sbjct 10199 CAGTTTATATTTATACACCATATATTCCTATAGCTTTTAACGGCTATACCTTTAGTTATA 10258
Query 2346 TATTTCTAGC----TCTATAGCTAGTCCTATATGCTATTTATACCTCTTTAAGATATATA 2401
|||||||| ||||||||| | | |||| |||||| || ||||||| ||||| ||
Sbjct 10259 CCTTTCTAGCCACACCTATAGCTAATACCATATCCTATTTCTATCTCTTTAGGATATTTA 10318
Query 2402 AACTT 2406
|||||
Sbjct 10319 AACTT 10323
>seq6263
Length=31128
Score = 98.7 bits (108), Expect = 2e-17
Identities = 98/127 (77%), Gaps = 4/127 (3%)
Strand=Plus/Minus
Query 2272 CTCCAGTCTTACCGCAGCTTATATTCATACTATATATATTCCTATAGTCTTTA----CTG 2327
|| |||||| | | ||||||||||| ||| ||||||||| ||||| |||| ||
Sbjct 12786 CTGCAGTCTCATCACAGCTTATATTTATATACTATATATTCGTATAGCTTTTAACGGCTA 12727
Query 2328 GCTCTACCTATAGCAATATATTTCTAGCTCTATAGCTAGTCCTATATGCTATTTATACCT 2387
|| ||||| |||| ||| |||||||| |||||||| | | |||| ||||||||| ||
Sbjct 12726 CCTATACCTTTAGCTATACCTTTCTAGCCATATAGCTAATACCATATCCTATTTATATCT 12667
Query 2388 CTTTAAG 2394
|||||||
Sbjct 12666 CTTTAAG 12660
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 7617111305846
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |