Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Operophtera_20brumata_20[genbank_20GCA_5F001266575.1_202015-08-11] 25,801 sequences; 638,207,720 total letters Query= NC_008875.1 Length=2540 Score E Sequences producing significant alignments: (Bits) Value seq6422 167 4e-38 seq9855 161 2e-36 seq2447 116 6e-23 >seq6422 Length=30189 Score = 167 bits (184), Expect = 4e-38 Identities = 169/215 (79%), Gaps = 7/215 (3%) Strand=Plus/Plus Query 478 GTGGCAGGTGTGGCTGACACTACCAGCCTACCTCAGCctataccatatactcatatagcc 537 ||||| |||||||| | | | || | |||||||| ||| | |||||| |||| | Sbjct 21011 GTGGCGGGTGTGGCAGCCCAGATCATCTCACCTCAGCTTATGC--TATACT-ATATTTTC 21067 Query 538 -tatagctat-actggctattacctatagcgatatatttctnnnnnnnnagctattccta 595 |||| || | | ||||||| |||||||| ||| |||||| |||| | ||| Sbjct 21068 ATATAACTTTTATTGGCTATGCCCTATAGCAATACATTTCTAGCTGTT-AGCTTATACTA 21126 Query 596 tatgctatatatacctCTTTAAGATATTTAAACTTACTTAAAGAGTTAAATATAATATAT 655 |||||||| |||||||||||||||||| |||||||| |||||||||| |||||| ||| Sbjct 21127 TATGCTATTTATACCTCTTTAAGATATATAAACTTATGTAAAGAGTTACATATAAAATAC 21186 Query 656 CACAGCCACGGGAAATAATATAGAGCTATAGGTAA 690 ||||||||||||||||||||||||||||| ||||| Sbjct 21187 CACAGCCACGGGAAATAATATAGAGCTAT-GGTAA 21220 >seq9855 Length=15086 Score = 161 bits (178), Expect = 2e-36 Identities = 168/215 (78%), Gaps = 7/215 (3%) Strand=Plus/Plus Query 478 GTGGCAGGTGTGGCTGACACTACCAGCCTACCTCAGCctataccatatactcatatagcc 537 ||||| |||||||| | | | || | |||||||| ||| | |||||| |||| | Sbjct 3027 GTGGCGGGTGTGGCAGCCCAGATCATCACACCTCAGCTTATGC--TATACT-ATATTTTC 3083 Query 538 -tatagctat-actggctattacctatagcgatatatttctnnnnnnnnagctattccta 595 |||| || | | ||||||| |||||||| ||| |||||| |||| ||| Sbjct 3084 ATATAACTTTTATTGGCTATGCCCTATAGCAATACATTTCTAGCTGTT-AGCTTACACTA 3142 Query 596 tatgctatatatacctCTTTAAGATATTTAAACTTACTTAAAGAGTTAAATATAATATAT 655 |||||||| |||||||||||||||||| |||||||| |||||||||| |||||| ||| Sbjct 3143 TATGCTATTTATACCTCTTTAAGATATATAAACTTATGTAAAGAGTTACATATAAAATAC 3202 Query 656 CACAGCCACGGGAAATAATATAGAGCTATAGGTAA 690 ||||||||||||||||||||||||||||| ||||| Sbjct 3203 CACAGCCACGGGAAATAATATAGAGCTAT-GGTAA 3236 >seq2447 Length=64305 Score = 116 bits (128), Expect = 6e-23 Identities = 103/129 (80%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 585 agctattcctatatgctatatatacctCTTTAAGATATTTAAACTTACTTAAAGAGTTAA 644 ||||| | |||| | |||| |||||||||||||||||| |||||||| |||||||||| Sbjct 3257 AGCTAGTTCTATTTCCTATTTATACCTCTTTAAGATATATAAACTTATTTAAAGAGTTTG 3198 Query 645 ATATAATATATCACAGCCACGGGAAATAATATAGAGCTATAGGTAATGTAGGATAGGTAT 704 |||||| | ||||||||| ||||| ||||||||||||| ||| ||| |||| || Sbjct 3197 ATATAAATAACCACAGCCACAAGAAATCGTATAGAGCTATAGCAAATCTAGAATAGAGAT 3138 Query 705 GCTATGCCA 713 | | |||| Sbjct 3137 GGTCCGCCA 3129 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8017001651596