Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Operophtera_20brumata_20[genbank_20GCA_5F001266575.1_202015-08-11] 25,801 sequences; 638,207,720 total letters Query= NC_008876.1 Length=2548 Score E Sequences producing significant alignments: (Bits) Value seq6422 127 3e-26 seq9855 118 2e-23 seq2447 95.1 2e-16 seq2536 93.3 7e-16 >seq6422 Length=30189 Score = 127 bits (140), Expect = 3e-26 Identities = 160/213 (75%), Gaps = 9/213 (4%) Strand=Plus/Minus Query 18 ATAGCTTTGCGTTATTCTTCGTGGCTGTGGTATATTATATTTAACTCTTTAGATAATTTT 77 |||||| | ||||| |||||||||||||| |||||| |||||||||| |||| ||| Sbjct 21215 ATAGCTCTATATTATTTCCCGTGGCTGTGGTATTTTATATGTAACTCTTTACATAAGTTT 21156 Query 78 AATTATCTTAAAGAGGCATATGTCTAGCAAATAGCAATAGCATTGTGAATAGGAATATAC 137 | ||||||||||||| ||| ||||| |||| | ||| | ||| ||| || Sbjct 21155 ATATATCTTAAAGAGG--TATAAATAGCATATAGTATAAGC-TAACAGCTAGAAATGTAT 21099 Query 138 TGCTATA-GGCATAGTCACTAATGATTATAGTAAACTTGTATAGTCTAGGCATAAGCTGA 196 ||||||| ||||||| || ||| ||||| ||| |||||| || ||||||||||| Sbjct 21098 TGCTATAGGGCATAGCCAATAAAAGTTATATGAAA---ATATAGTATA-GCATAAGCTGA 21043 Query 197 GGTGAGACTGAATGTGCCTGTCACACCCGCCAC 229 ||||||| ||| | ||| |||||||||||| Sbjct 21042 GGTGAGA-TGATCTGGGCTGCCACACCCGCCAC 21011 >seq9855 Length=15086 Score = 118 bits (130), Expect = 2e-23 Identities = 158/213 (74%), Gaps = 9/213 (4%) Strand=Plus/Minus Query 18 ATAGCTTTGCGTTATTCTTCGTGGCTGTGGTATATTATATTTAACTCTTTAGATAATTTT 77 |||||| | ||||| |||||||||||||| |||||| |||||||||| |||| ||| Sbjct 3231 ATAGCTCTATATTATTTCCCGTGGCTGTGGTATTTTATATGTAACTCTTTACATAAGTTT 3172 Query 78 AATTATCTTAAAGAGGCATATGTCTAGCAAATAGCAATAGCATTGTGAATAGGAATATAC 137 | ||||||||||||| ||| ||||| |||| ||| | ||| ||| || Sbjct 3171 ATATATCTTAAAGAGG--TATAAATAGCATATAGTGTAAGC-TAACAGCTAGAAATGTAT 3115 Query 138 TGCTATA-GGCATAGTCACTAATGATTATAGTAAACTTGTATAGTCTAGGCATAAGCTGA 196 ||||||| ||||||| || ||| ||||| ||| |||||| || ||||||||||| Sbjct 3114 TGCTATAGGGCATAGCCAATAAAAGTTATATGAAA---ATATAGTATA-GCATAAGCTGA 3059 Query 197 GGTGAGACTGAATGTGCCTGTCACACCCGCCAC 229 |||| || ||| | ||| |||||||||||| Sbjct 3058 GGTGTGA-TGATCTGGGCTGCCACACCCGCCAC 3027 >seq2447 Length=64305 Score = 95.1 bits (104), Expect = 2e-16 Identities = 134/184 (73%), Gaps = 6/184 (3%) Strand=Plus/Plus Query 1 TATTCTAGATTTGCTCTATAGCTTTGCGTTATTCTTCGTGGCTGTGGTATATTATATTTA 60 ||||||||||||||| || || | || | ||||| ||||||||||| |||||| | Sbjct 3143 TATTCTAGATTTGCTATAGCTCTATACGAT-TTCTT-GTGGCTGTGGTTATTTATATCAA 3200 Query 61 ACTCTTTAGATAATTTTAATTATCTTAAAGAGGCATATGTCTAGCAAATAGCAATAGCAT 120 |||||||| |||| |||| ||||||||||||| ||| ||| |||||| | |||| Sbjct 3201 ACTCTTTAAATAAGTTTATATATCTTAAAGAGG--TATAAATAGGAAATAGAACTAGCTA 3258 Query 121 TGTGAATAGGAATATACTGCTATAGGCATAGTCACTAATGATTATAGTAAACTTGTATAG 180 | | ||| ||| || | ||| || |||||| || | ||||||||| | |||| Sbjct 3259 TATAGTTAGAAATGTATTATAATAAGCGTAGTCA--TATAAGTATAGTAAATTATAATAG 3316 Query 181 TCTA 184 | || Sbjct 3317 TATA 3320 >seq2536 Length=66406 Score = 93.3 bits (102), Expect = 7e-16 Identities = 175/254 (69%), Gaps = 15/254 (6%) Strand=Plus/Minus Query 1494 GACCAATATGGATAACATTTCTCCTCGTTGTTCTCAATGATCTTGGTCAACACCACGATG 1553 |||||||| ||||| ||||||| || |||| ||| |||| || ||||| |||||||| Sbjct 62205 GACCAATAAGGATATCATTTCTGCTTATTGTCCTCTTTGATATTTGTCAATACCACGATA 62146 Query 1554 ATTCGGGAATTTTGCTGCGTGATCATGTCGAAAAAATCATCGATCGTTTCGTCCATGGGC 1613 ||| | | | |||| | |||||| |||| ||||| ||||| || || || Sbjct 62145 ATTTCGCTCTCATTCTGCCAAA-CATGTCCCAAAAGTCATCCATCGTCCAGTACAACGGT 62087 Query 1614 GCTTGGGTAGCGATGAGAT-CTTGTCCCTTTCTCAAACTGCGCACATAATTTGCGTGGAT 1672 |||| |||||||||| | ||| | ||||| || | | ||| ||||| || | || Sbjct 62086 GCTTAAGTAGCGATGAATTTCTTCTGACTTTCCCAGCC-GTTCACGTAATTGGCATTAAT 62028 Query 1673 GTAGTCCGATGCATTGGCAGACACAAAATCATCAGACTCTGACAATATCACACGCGAATG 1732 |||||||||| | || ||| | || ||| || ||||||| |||| Sbjct 62027 GTAGTCCGAT---TGGGTAGA---------GTTCGATCTTGATAACTTCACACGGGAATA 61980 Query 1733 ATCCCAGCATGGGA 1746 |||||||||||||| Sbjct 61979 ATCCCAGCATGGGA 61966 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8042594633724