Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Operophtera_20brumata_20[genbank_20GCA_5F001266575.1_202015-08-11] 25,801 sequences; 638,207,720 total letters Query= NC_008881.1 Length=2615 Score E Sequences producing significant alignments: (Bits) Value seq9855 170 3e-39 seq6422 165 1e-37 seq2447 140 5e-30 seq1896 77.0 5e-11 >seq9855 Length=15086 Score = 170 bits (188), Expect = 3e-39 Identities = 156/191 (82%), Gaps = 6/191 (3%) Strand=Plus/Plus Query 308 ACCTCAGCCTATGCTTATACCTTATTTTCCAATAGCCTTTACTGGCGATATC-TCTAGTA 366 |||||||| |||||| |||| ||||||| ||| | |||| |||| || | | ||| | Sbjct 3056 ACCTCAGCTTATGCT-ATACTATATTTTCATATAACTTTTATTGGCTATGCCCTATAGCA 3114 Query 367 ATACATTTCTACCTATATAGCTAGCGTTATATTCTATATTTATAC-TCTTTAAGATAAAT 425 ||||||||||| || | ||||| | ||||| |||| |||||| ||||||||||| || Sbjct 3115 ATACATTTCTAGCTGT-TAGCTTACACTATATGCTAT--TTATACCTCTTTAAGATATAT 3171 Query 426 AACATTATTTAAAGAGTTACATATAAAATACCACAGCCACGAGAAATAATATACGGCTAT 485 || |||| |||||||||||||||||||||||||||||||| ||||||||||| ||||| Sbjct 3172 AAACTTATGTAAAGAGTTACATATAAAATACCACAGCCACGGGAAATAATATAGAGCTAT 3231 Query 486 GGAAAATCTAG 496 || || ||||| Sbjct 3232 GGTAAGTCTAG 3242 >seq6422 Length=30189 Score = 165 bits (182), Expect = 1e-37 Identities = 155/191 (81%), Gaps = 6/191 (3%) Strand=Plus/Plus Query 308 ACCTCAGCCTATGCTTATACCTTATTTTCCAATAGCCTTTACTGGCGATATC-TCTAGTA 366 |||||||| |||||| |||| ||||||| ||| | |||| |||| || | | ||| | Sbjct 21040 ACCTCAGCTTATGCT-ATACTATATTTTCATATAACTTTTATTGGCTATGCCCTATAGCA 21098 Query 367 ATACATTTCTACCTATATAGCTAGCGTTATATTCTATATTTATAC-TCTTTAAGATAAAT 425 ||||||||||| || | ||||| ||||| |||| |||||| ||||||||||| || Sbjct 21099 ATACATTTCTAGCTGT-TAGCTTATACTATATGCTAT--TTATACCTCTTTAAGATATAT 21155 Query 426 AACATTATTTAAAGAGTTACATATAAAATACCACAGCCACGAGAAATAATATACGGCTAT 485 || |||| |||||||||||||||||||||||||||||||| ||||||||||| ||||| Sbjct 21156 AAACTTATGTAAAGAGTTACATATAAAATACCACAGCCACGGGAAATAATATAGAGCTAT 21215 Query 486 GGAAAATCTAG 496 || || ||||| Sbjct 21216 GGTAAGTCTAG 21226 >seq2447 Length=64305 Score = 140 bits (154), Expect = 5e-30 Identities = 114/136 (84%), Gaps = 3/136 (2%) Strand=Plus/Minus Query 365 TAATACATTTCTACCTATATAGCTAGCGTTATATTCTATATTTATAC-TCTTTAAGATAA 423 ||||||||||||| |||||||||||| || |||| ||||||||| ||||||||||| Sbjct 3277 TAATACATTTCTAACTATATAGCTAG--TTCTATTTCCTATTTATACCTCTTTAAGATAT 3220 Query 424 ATAACATTATTTAAAGAGTTACATATAAAATACCACAGCCACGAGAAATAATATACGGCT 483 |||| |||||||||||||| ||||||| ||||||||||| |||||| |||| ||| Sbjct 3219 ATAAACTTATTTAAAGAGTTTGATATAAATAACCACAGCCACAAGAAATCGTATAGAGCT 3160 Query 484 ATGGAAAATCTAGAAT 499 || | ||||||||||| Sbjct 3159 ATAGCAAATCTAGAAT 3144 >seq1896 Length=105120 Score = 77.0 bits (84), Expect = 5e-11 Identities = 113/158 (72%), Gaps = 13/158 (8%) Strand=Plus/Plus Query 347 TACTGGCGATATCTCTAGTAATACATTTCTACCTATATAGCTAGCGTTATATTCTATATT 406 || |||| || || ||| ||| ||| || | | ||||||| | |||| | |||| Sbjct 45618 TAATGGCATTAACTATAGCAATTTATTATTAGGTCTCTAGCTAGTGCTATAACCC-TATT 45676 Query 407 TATACTCTTT-AAGATAAA----TAACATTATTTAAAGAGTTACATATAAAATACCACAG 461 ||| | | || |||||| | ||| |||||||||| ||||||||||||||| Sbjct 45677 TATTCCCCTTCAAGATATAAGTATAAAATTATTTAAAC-------TATAAAATACCACAG 45729 Query 462 CCACGAGAAATAATATACGGCTATGGAAAATCTAGAAT 499 |||| |||||| ||||| ||||| | |||||||| || Sbjct 45730 CCACAAGAAATTATATAAAGCTATAGTAAATCTAGGAT 45767 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8256935859046