Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Operophtera_20brumata_20[genbank_20GCA_5F001266575.1_202015-08-11] 25,801 sequences; 638,207,720 total letters Query= NC_008887.1 Length=2723 Score E Sequences producing significant alignments: (Bits) Value seq6422 206 5e-50 seq9855 203 6e-49 seq2447 154 3e-34 seq1896 93.3 7e-16 >seq6422 Length=30189 Score = 206 bits (228), Expect = 5e-50 Identities = 191/237 (81%), Gaps = 4/237 (2%) Strand=Plus/Minus Query 230 TGGCTGGTCATTTTCATTCTAGATTTTCTATAGGCCTATAAGTTTTCCCGTGGCTGTGGT 289 |||||| ||| | | ||||| || | |||| ||||| ||||||||||||||||| Sbjct 21244 TGGCTGCCAATTCTAGTACTAGACTTACCATAGCTCTATATTATTTCCCGTGGCTGTGGT 21185 Query 290 ATTTTATATATAACTCTTTACATAAGTTTATATATCTTAAAGAGGTATAAATAGCATATA 349 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 21184 ATTTTATATGTAACTCTTTACATAAGTTTATATATCTTAAAGAGGTATAAATAGCATATA 21125 Query 350 GGACTAGCTATAGAGCTAGTAGTGTATTGCTGTA-TGTAAGGTCTCTGGAGGCTATGTAA 408 | | ||||| | |||||| | ||||||||| || | | | | | | | ||| | | Sbjct 21124 GTATAAGCTA-ACAGCTAGAAATGTATTGCTATAGGGCATAGCCAATAAAAGTTATATGA 21066 Query 409 AAATATAGTATAAGCATAAGCTGAGGTGGGACTGAAAATGGCAGCCACACCCGCCAC 465 ||||||||||| |||||||||||||||| || ||| ||| |||||||||||||| Sbjct 21065 AAATATAGTAT-AGCATAAGCTGAGGTGAGA-TGATCTGGGCTGCCACACCCGCCAC 21011 >seq9855 Length=15086 Score = 203 bits (224), Expect = 6e-49 Identities = 197/248 (79%), Gaps = 4/248 (2%) Strand=Plus/Minus Query 219 TGTGGCTGATATGGCTGGTCATTTTCATTCTAGATTTTCTATAGGCCTATAAGTTTTCCC 278 |||||| | |||||| ||| | | ||||| || | |||| ||||| |||||| Sbjct 3271 TGTGGCAAACGTGGCTGCCAATTCTAGTACTAGACTTACCATAGCTCTATATTATTTCCC 3212 Query 279 GTGGCTGTGGTATTTTATATATAACTCTTTACATAAGTTTATATATCTTAAAGAGGTATA 338 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 3211 GTGGCTGTGGTATTTTATATGTAACTCTTTACATAAGTTTATATATCTTAAAGAGGTATA 3152 Query 339 AATAGCATATAGGACTAGCTATAGAGCTAGTAGTGTATTGCTGTA-TGTAAGGTCTCTGG 397 |||||||||||| ||||| | |||||| | ||||||||| || | | | | | Sbjct 3151 AATAGCATATAGTGTAAGCTA-ACAGCTAGAAATGTATTGCTATAGGGCATAGCCAATAA 3093 Query 398 AGGCTATGTAAAAATATAGTATAAGCATAAGCTGAGGTGGGACTGAAAATGGCAGCCACA 457 | | ||| | |||||||||||| |||||||||||||||| || ||| ||| |||||| Sbjct 3092 AAGTTATATGAAAATATAGTAT-AGCATAAGCTGAGGTGTGA-TGATCTGGGCTGCCACA 3035 Query 458 CCCGCCAC 465 |||||||| Sbjct 3034 CCCGCCAC 3027 >seq2447 Length=64305 Score = 154 bits (170), Expect = 3e-34 Identities = 114/133 (86%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 245 ATTCTAGATTTTCTATAGGCCTATAAGTTTTCCCGTGGCTGTGGTATTTTATATATAACT 304 ||||||||||| |||||| ||||| | |||| ||||||||||| ||||||| |||| Sbjct 3144 ATTCTAGATTTGCTATAGCTCTATACGATTTCTTGTGGCTGTGGTTATTTATATCAAACT 3203 Query 305 CTTTACATAAGTTTATATATCTTAAAGAGGTATAAATAGCATATAGGACTAGCTATAGAG 364 ||||| ||||||||||||||||||||||||||||||||| | |||| |||||||||| || Sbjct 3204 CTTTAAATAAGTTTATATATCTTAAAGAGGTATAAATAGGAAATAGAACTAGCTATATAG 3263 Query 365 CTAGTAGTGTATT 377 ||| | |||||| Sbjct 3264 TTAGAAATGTATT 3276 >seq1896 Length=105120 Score = 93.3 bits (102), Expect = 7e-16 Identities = 123/170 (72%), Gaps = 17/170 (10%) Strand=Plus/Minus Query 219 TGTGGCTGATATGGCTGGTCATTTTCATTCTAGATTTTCTATAGGCCTATAAGTTTTCCC 278 ||||||| ||| | |||||| || |||||||| |||||| |||| |||| Sbjct 45788 TGTGGCTAATA-----GATCATTTCTATCCTAGATTTACTATAGCTTTATATAATTTCTT 45734 Query 279 GTGGCTGTGGTATTTTATATATAACTCTTTACATAAGTTTA----TATATCTTAAAGAGG 334 ||||||||||||||||||| |||| |||| |||| |||||||| ||| || Sbjct 45733 GTGGCTGTGGTATTTTATA-------GTTTAAATAATTTTATACTTATATCTTGAAGGGG 45681 Query 335 TATAAATA-GCATATAGGACTAGCTATAGAGCTAGTAGTGTATTGCTGTA 383 ||||||| | ||||| |||||||| ||| ||| || | |||||| || Sbjct 45680 AATAAATAGGGTTATAGCACTAGCTAGAGACCTAATAATAAATTGCTATA 45631 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8602441117774