Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Operophtera_20brumata_20[genbank_20GCA_5F001266575.1_202015-08-11]
25,801 sequences; 638,207,720 total letters
Query= NC_008887.1
Length=2723
Score E
Sequences producing significant alignments: (Bits) Value
seq6422 206 5e-50
seq9855 203 6e-49
seq2447 154 3e-34
seq1896 93.3 7e-16
>seq6422
Length=30189
Score = 206 bits (228), Expect = 5e-50
Identities = 191/237 (81%), Gaps = 4/237 (2%)
Strand=Plus/Minus
Query 230 TGGCTGGTCATTTTCATTCTAGATTTTCTATAGGCCTATAAGTTTTCCCGTGGCTGTGGT 289
|||||| ||| | | ||||| || | |||| ||||| |||||||||||||||||
Sbjct 21244 TGGCTGCCAATTCTAGTACTAGACTTACCATAGCTCTATATTATTTCCCGTGGCTGTGGT 21185
Query 290 ATTTTATATATAACTCTTTACATAAGTTTATATATCTTAAAGAGGTATAAATAGCATATA 349
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 21184 ATTTTATATGTAACTCTTTACATAAGTTTATATATCTTAAAGAGGTATAAATAGCATATA 21125
Query 350 GGACTAGCTATAGAGCTAGTAGTGTATTGCTGTA-TGTAAGGTCTCTGGAGGCTATGTAA 408
| | ||||| | |||||| | ||||||||| || | | | | | | | ||| | |
Sbjct 21124 GTATAAGCTA-ACAGCTAGAAATGTATTGCTATAGGGCATAGCCAATAAAAGTTATATGA 21066
Query 409 AAATATAGTATAAGCATAAGCTGAGGTGGGACTGAAAATGGCAGCCACACCCGCCAC 465
||||||||||| |||||||||||||||| || ||| ||| ||||||||||||||
Sbjct 21065 AAATATAGTAT-AGCATAAGCTGAGGTGAGA-TGATCTGGGCTGCCACACCCGCCAC 21011
>seq9855
Length=15086
Score = 203 bits (224), Expect = 6e-49
Identities = 197/248 (79%), Gaps = 4/248 (2%)
Strand=Plus/Minus
Query 219 TGTGGCTGATATGGCTGGTCATTTTCATTCTAGATTTTCTATAGGCCTATAAGTTTTCCC 278
|||||| | |||||| ||| | | ||||| || | |||| ||||| ||||||
Sbjct 3271 TGTGGCAAACGTGGCTGCCAATTCTAGTACTAGACTTACCATAGCTCTATATTATTTCCC 3212
Query 279 GTGGCTGTGGTATTTTATATATAACTCTTTACATAAGTTTATATATCTTAAAGAGGTATA 338
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 3211 GTGGCTGTGGTATTTTATATGTAACTCTTTACATAAGTTTATATATCTTAAAGAGGTATA 3152
Query 339 AATAGCATATAGGACTAGCTATAGAGCTAGTAGTGTATTGCTGTA-TGTAAGGTCTCTGG 397
|||||||||||| ||||| | |||||| | ||||||||| || | | | | |
Sbjct 3151 AATAGCATATAGTGTAAGCTA-ACAGCTAGAAATGTATTGCTATAGGGCATAGCCAATAA 3093
Query 398 AGGCTATGTAAAAATATAGTATAAGCATAAGCTGAGGTGGGACTGAAAATGGCAGCCACA 457
| | ||| | |||||||||||| |||||||||||||||| || ||| ||| ||||||
Sbjct 3092 AAGTTATATGAAAATATAGTAT-AGCATAAGCTGAGGTGTGA-TGATCTGGGCTGCCACA 3035
Query 458 CCCGCCAC 465
||||||||
Sbjct 3034 CCCGCCAC 3027
>seq2447
Length=64305
Score = 154 bits (170), Expect = 3e-34
Identities = 114/133 (86%), Gaps = 0/133 (0%)
Strand=Plus/Plus
Query 245 ATTCTAGATTTTCTATAGGCCTATAAGTTTTCCCGTGGCTGTGGTATTTTATATATAACT 304
||||||||||| |||||| ||||| | |||| ||||||||||| ||||||| ||||
Sbjct 3144 ATTCTAGATTTGCTATAGCTCTATACGATTTCTTGTGGCTGTGGTTATTTATATCAAACT 3203
Query 305 CTTTACATAAGTTTATATATCTTAAAGAGGTATAAATAGCATATAGGACTAGCTATAGAG 364
||||| ||||||||||||||||||||||||||||||||| | |||| |||||||||| ||
Sbjct 3204 CTTTAAATAAGTTTATATATCTTAAAGAGGTATAAATAGGAAATAGAACTAGCTATATAG 3263
Query 365 CTAGTAGTGTATT 377
||| | ||||||
Sbjct 3264 TTAGAAATGTATT 3276
>seq1896
Length=105120
Score = 93.3 bits (102), Expect = 7e-16
Identities = 123/170 (72%), Gaps = 17/170 (10%)
Strand=Plus/Minus
Query 219 TGTGGCTGATATGGCTGGTCATTTTCATTCTAGATTTTCTATAGGCCTATAAGTTTTCCC 278
||||||| ||| | |||||| || |||||||| |||||| |||| ||||
Sbjct 45788 TGTGGCTAATA-----GATCATTTCTATCCTAGATTTACTATAGCTTTATATAATTTCTT 45734
Query 279 GTGGCTGTGGTATTTTATATATAACTCTTTACATAAGTTTA----TATATCTTAAAGAGG 334
||||||||||||||||||| |||| |||| |||| |||||||| ||| ||
Sbjct 45733 GTGGCTGTGGTATTTTATA-------GTTTAAATAATTTTATACTTATATCTTGAAGGGG 45681
Query 335 TATAAATA-GCATATAGGACTAGCTATAGAGCTAGTAGTGTATTGCTGTA 383
||||||| | ||||| |||||||| ||| ||| || | |||||| ||
Sbjct 45680 AATAAATAGGGTTATAGCACTAGCTAGAGACCTAATAATAAATTGCTATA 45631
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 8602441117774
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |