Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Operophtera_20brumata_20[genbank_20GCA_5F001266575.1_202015-08-11] 25,801 sequences; 638,207,720 total letters Query= NC_008893.1 Length=2808 Score E Sequences producing significant alignments: (Bits) Value seq6422 161 2e-36 seq9855 152 9e-34 seq2447 116 7e-23 >seq6422 Length=30189 Score = 161 bits (178), Expect = 2e-36 Identities = 221/297 (74%), Gaps = 9/297 (3%) Strand=Plus/Minus Query 63 TCTCTATTATTTCCTGTGGCTGTGGttatttatattaaactcttttaatagttttatata 122 ||| |||||||||| ||||||||||| ||||||| |||||||| ||| |||||||| Sbjct 21210 TCTATATTATTTCCCGTGGCTGTGGTATTTTATATGTAACTCTTTACATAAGTTTATATA 21151 Query 123 tcttaataggatatatatagcata-agtaatagctatatagATGAAAATGTATTGCTATA 181 |||||| | |||| |||||||| |||| ||||| | || | ||||||||||||||| Sbjct 21150 TCTTAAAGAGGTATAAATAGCATATAGTATAAGCTA-ACAGCTAGAAATGTATTGCTATA 21092 Query 182 GCT-ATAACCACTAAAGGCTATCCTGAATATAATGTATAAACATAAGCTGAGGTAAGACT 240 | ||| ||| |||| | ||| |||| ||| ||||| ||||||||||||| ||| | Sbjct 21091 GGGCATAGCCAATAAAAGTTATA-TGAAAATATAGTATAG-CATAAGCTGAGGTGAGA-T 21035 Query 241 GAATTCACCCGCCACGCTCGCCACTACTATC-ATTCGGACACTTCCCATTGGTATTTCTT 299 || | | ||||| | |||||| | | || | |||| |||||| | | |||| || Sbjct 21034 GATCTGGGCTGCCACACCCGCCACCAATTTCCAATCGGGGACTTCCAGTAGCCATTT-TT 20976 Query 300 AATGGACCAGTG-CTCGTTGGATTCGTCTCATCGAGATAAATACCATGAGCCTTATC 355 | ||||| | | |||||||||||||| || || ||| | |||||||| ||| Sbjct 20975 GGTCGACCATGGACCCGTTGGATTCGTCTTGACGCGAGGAATCCGATGAGCCTAATC 20919 >seq9855 Length=15086 Score = 152 bits (168), Expect = 9e-34 Identities = 219/297 (74%), Gaps = 9/297 (3%) Strand=Plus/Minus Query 63 TCTCTATTATTTCCTGTGGCTGTGGttatttatattaaactcttttaatagttttatata 122 ||| |||||||||| ||||||||||| ||||||| |||||||| ||| |||||||| Sbjct 3226 TCTATATTATTTCCCGTGGCTGTGGTATTTTATATGTAACTCTTTACATAAGTTTATATA 3167 Query 123 tcttaataggatatatatagcata-agtaatagctatatagATGAAAATGTATTGCTATA 181 |||||| | |||| |||||||| ||| ||||| | || | ||||||||||||||| Sbjct 3166 TCTTAAAGAGGTATAAATAGCATATAGTGTAAGCTA-ACAGCTAGAAATGTATTGCTATA 3108 Query 182 GCT-ATAACCACTAAAGGCTATCCTGAATATAATGTATAAACATAAGCTGAGGTAAGACT 240 | ||| ||| |||| | ||| |||| ||| ||||| ||||||||||||| || | Sbjct 3107 GGGCATAGCCAATAAAAGTTATA-TGAAAATATAGTATAG-CATAAGCTGAGGTGTGA-T 3051 Query 241 GAATTCACCCGCCACGCTCGCCACTACTATC-ATTCGGACACTTCCCATTGGTATTTCTT 299 || | | ||||| | |||||| | | || | |||| |||||| | | |||| || Sbjct 3050 GATCTGGGCTGCCACACCCGCCACCAATTTCCAATCGGGGACTTCCAGTAGCCATTT-TT 2992 Query 300 AATGGACCAGTG-CTCGTTGGATTCGTCTCATCGAGATAAATACCATGAGCCTTATC 355 | ||||| | | |||||||||||||| || || ||| | |||||||| ||| Sbjct 2991 GGTCGACCATGGACCCGTTGGATTCGTCTTGACGCGAGGAATCCGATGAGCCTAATC 2935 >seq2447 Length=64305 Score = 116 bits (128), Expect = 7e-23 Identities = 109/135 (81%), Gaps = 3/135 (2%) Strand=Plus/Plus Query 43 TATTCTAGA-TTGCTAATGAATCTCTATTATTTCCTGTGGCTGTGGttatttatattaaa 101 ||||||||| ||||| || ||| || ||||| ||||||||||||||||||||| ||| Sbjct 3143 TATTCTAGATTTGCT-ATAGCTCTATACGATTTCTTGTGGCTGTGGTTATTTATATCAAA 3201 Query 102 ctcttttaatagttttatatatcttaataggatatatatagcata-agtaatagctatat 160 |||||| |||| |||||||||||||| | |||| |||| | | || | ||||||||| Sbjct 3202 CTCTTTAAATAAGTTTATATATCTTAAAGAGGTATAAATAGGAAATAGAACTAGCTATAT 3261 Query 161 agATGAAAATGTATT 175 || | ||||||||| Sbjct 3262 AGTTAGAAATGTATT 3276 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8871095883945