Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Operophtera_20brumata_20[genbank_20GCA_5F001266575.1_202015-08-11] 25,801 sequences; 638,207,720 total letters Query= NC_008894.1 Length=2819 Score E Sequences producing significant alignments: (Bits) Value seq2447 132 9e-28 seq6422 116 7e-23 seq9855 113 8e-22 seq1896 104 4e-19 >seq2447 Length=64305 Score = 132 bits (146), Expect = 9e-28 Identities = 105/123 (85%), Gaps = 5/123 (4%) Strand=Plus/Minus Query 282 CTAGCTCTATAGCTAGTCCTATATTCCTATTTATACCTCTTTAAGATATATAAACTTATT 341 ||| || |||||||||| |||| ||||||||||||||||||||||||||||||||||||| Sbjct 3267 CTAACTATATAGCTAGTTCTAT-TTCCTATTTATACCTCTTTAAGATATATAAACTTATT 3209 Query 342 TAAAGAGTT--AAATAAATAATACCACAGCCACAAAAAATTATATAAATTCATAGTAATT 399 ||||||||| | |||||||| |||||||||||| |||| |||| | |||| || | Sbjct 3208 TAAAGAGTTTGATATAAATAA--CCACAGCCACAAGAAATCGTATAGAGCTATAGCAAAT 3151 Query 400 CTA 402 ||| Sbjct 3150 CTA 3148 >seq6422 Length=30189 Score = 116 bits (128), Expect = 7e-23 Identities = 100/121 (83%), Gaps = 2/121 (2%) Strand=Plus/Plus Query 282 CTAGCTCTATAGCTAGTCCTATATTCCTATTTATACCTCTTTAAGATATATAAACTTATT 341 |||||| | ||||| | |||||| | |||||||||||||||||||||||||||||||| Sbjct 21107 CTAGCTGT-TAGCTTATACTATATGC-TATTTATACCTCTTTAAGATATATAAACTTATG 21164 Query 342 TAAAGAGTTAAATAAATAATACCACAGCCACAAAAAATTATATAAATTCATAGTAATTCT 401 |||||||||| ||| | |||||||||||||| |||| ||||| | || |||| ||| Sbjct 21165 TAAAGAGTTACATATAAAATACCACAGCCACGGGAAATAATATAGAGCTATGGTAAGTCT 21224 Query 402 A 402 | Sbjct 21225 A 21225 >seq9855 Length=15086 Score = 113 bits (124), Expect = 8e-22 Identities = 99/121 (82%), Gaps = 2/121 (2%) Strand=Plus/Plus Query 282 CTAGCTCTATAGCTAGTCCTATATTCCTATTTATACCTCTTTAAGATATATAAACTTATT 341 |||||| | ||||| |||||| | |||||||||||||||||||||||||||||||| Sbjct 3123 CTAGCTGT-TAGCTTACACTATATGC-TATTTATACCTCTTTAAGATATATAAACTTATG 3180 Query 342 TAAAGAGTTAAATAAATAATACCACAGCCACAAAAAATTATATAAATTCATAGTAATTCT 401 |||||||||| ||| | |||||||||||||| |||| ||||| | || |||| ||| Sbjct 3181 TAAAGAGTTACATATAAAATACCACAGCCACGGGAAATAATATAGAGCTATGGTAAGTCT 3240 Query 402 A 402 | Sbjct 3241 A 3241 >seq1896 Length=105120 Score = 104 bits (114), Expect = 4e-19 Identities = 101/129 (78%), Gaps = 11/129 (9%) Strand=Plus/Plus Query 283 TAGCTCTATAGCTAGTCCTATATTCCTATTTATACCTCTTTAAGATATA----TAAACTT 338 ||| ||| |||||||| ||||| ||||||||| || ||| |||||||| |||| || Sbjct 45647 TAGGTCTCTAGCTAGTGCTATAACCCTATTTATTCCCCTTCAAGATATAAGTATAAAATT 45706 Query 339 ATTTAAAGAGTTAAATAAATAATACCACAGCCACAAAAAATTATATAAATTCATAGTAAT 398 ||||||| ||||| ||||||||||||||| |||||||||||| ||||||| Sbjct 45707 ATTTAAACT-----ATAAA--ATACCACAGCCACAAGAAATTATATAAAGCTATAGTAAA 45759 Query 399 TCTAAGATA 407 |||| |||| Sbjct 45760 TCTAGGATA 45768 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8906285950560