Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Operophtera_20brumata_20[genbank_20GCA_5F001266575.1_202015-08-11] 25,801 sequences; 638,207,720 total letters Query= NC_008895.1 Length=2854 Score E Sequences producing significant alignments: (Bits) Value seq9855 149 1e-32 seq6422 149 1e-32 seq2447 116 7e-23 >seq9855 Length=15086 Score = 149 bits (164), Expect = 1e-32 Identities = 179/242 (74%), Gaps = 4/242 (2%) Strand=Plus/Minus Query 1397 GTGGCAGCCAAATCTCATACTAGAATTACTATAGCGCTATACGATTCTTCGTGGCTTTGG 1456 ||||| ||||| ||| ||||||| |||| ||||| ||||| ||| ||||||| ||| Sbjct 3261 GTGGCTGCCAATTCTAGTACTAGACTTACCATAGCTCTATATTATTTCCCGTGGCTGTGG 3202 Query 1457 TTATTTATATGTAACTCTTTAAATAAGTTTATTTATCTTAAAGGGataaatatagcatat 1516 | |||||||||||||||||| |||||||||| |||||||||| | || | ||||||||| Sbjct 3201 TATTTTATATGTAACTCTTTACATAAGTTTATATATCTTAAAGAGGTATAAATAGCATAT 3142 Query 1517 aatgataataatataggtaggagtatatagC-NNNNNNNNNNNCCGATAAAAGCTATGTA 1575 | || ||| | || ||| | | ||| || || ||||||| ||| | Sbjct 3141 AGTG-TAAGCTAACAGCTAGAAATGTATTGCTATAGGGCATAGCCAATAAAAGTTATATG 3083 Query 1576 AAAATATAGTATGAGCATAAGCTAAGGCGGGATAGAAATAACACGCCACACCTGCCACAA 1635 |||||||||||| |||||||||| ||| | ||| || | |||||||| ||||| | Sbjct 3082 AAAATATAGTAT-AGCATAAGCTGAGGTGTGAT-GATCTGGGCTGCCACACCCGCCACCA 3025 Query 1636 AT 1637 || Sbjct 3024 AT 3023 >seq6422 Length=30189 Score = 149 bits (164), Expect = 1e-32 Identities = 179/242 (74%), Gaps = 4/242 (2%) Strand=Plus/Minus Query 1397 GTGGCAGCCAAATCTCATACTAGAATTACTATAGCGCTATACGATTCTTCGTGGCTTTGG 1456 ||||| ||||| ||| ||||||| |||| ||||| ||||| ||| ||||||| ||| Sbjct 21245 GTGGCTGCCAATTCTAGTACTAGACTTACCATAGCTCTATATTATTTCCCGTGGCTGTGG 21186 Query 1457 TTATTTATATGTAACTCTTTAAATAAGTTTATTTATCTTAAAGGGataaatatagcatat 1516 | |||||||||||||||||| |||||||||| |||||||||| | || | ||||||||| Sbjct 21185 TATTTTATATGTAACTCTTTACATAAGTTTATATATCTTAAAGAGGTATAAATAGCATAT 21126 Query 1517 aatgataataatataggtaggagtatatagC-NNNNNNNNNNNCCGATAAAAGCTATGTA 1575 | | |||| | || ||| | | ||| || || ||||||| ||| | Sbjct 21125 AGT-ATAAGCTAACAGCTAGAAATGTATTGCTATAGGGCATAGCCAATAAAAGTTATATG 21067 Query 1576 AAAATATAGTATGAGCATAAGCTAAGGCGGGATAGAAATAACACGCCACACCTGCCACAA 1635 |||||||||||| |||||||||| ||| | ||| || | |||||||| ||||| | Sbjct 21066 AAAATATAGTAT-AGCATAAGCTGAGGTGAGAT-GATCTGGGCTGCCACACCCGCCACCA 21009 Query 1636 AT 1637 || Sbjct 21008 AT 21007 >seq2447 Length=64305 Score = 116 bits (128), Expect = 7e-23 Identities = 93/111 (84%), Gaps = 1/111 (1%) Strand=Plus/Plus Query 1408 ATCTC-ATACTAGAATTACTATAGCGCTATACGATTCTTCGTGGCTTTGGTTATTTATAT 1466 ||||| || ||||| || ||||||| |||||||||| | |||||| ||||||||||||| Sbjct 3138 ATCTCTATTCTAGATTTGCTATAGCTCTATACGATTTCTTGTGGCTGTGGTTATTTATAT 3197 Query 1467 GTAACTCTTTAAATAAGTTTATTTATCTTAAAGGGataaatatagcatata 1517 |||||||||||||||||||| |||||||||| | || | |||| | ||| Sbjct 3198 CAAACTCTTTAAATAAGTTTATATATCTTAAAGAGGTATAAATAGGAAATA 3248 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 9018254344335