Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Operophtera_20brumata_20[genbank_20GCA_5F001266575.1_202015-08-11] 25,801 sequences; 638,207,720 total letters Query= NC_008897.1 Length=2871 Score E Sequences producing significant alignments: (Bits) Value seq9855 138 2e-29 seq6422 134 3e-28 seq16437 93.3 8e-16 >seq9855 Length=15086 Score = 138 bits (152), Expect = 2e-29 Identities = 335/490 (68%), Gaps = 18/490 (4%) Strand=Plus/Minus Query 2220 CTTAAAGAGGtatataatagtatataaagctagctatatagctataaatactattgctat 2279 |||||||||||||| ||||| ||||| | ||||| | ||||| |||| ||||||||| Sbjct 3165 CTTAAAGAGGTATA-AATAGCATATAGTGTAAGCTA-ACAGCTAGAAATG-TATTGCTAT 3109 Query 2280 aag-catagacactataagctatataagtatTTAAAGTATAAGCATAAGCTGAGGTGGGA 2338 | | ||||| || || ||| ||||| | || || ||||| ||||||||||||||| || Sbjct 3108 AGGGCATAGCCAATAAAAGTTATATGAAAATATA--GTATA-GCATAAGCTGAGGTGTGA 3052 Query 2339 TTGGAATTGGCCGCCACACCTGCCACACCTGTCCAGA--GGCACTTGCGCGAGGAATTTT 2396 | | | ||| |||||||| ||||| | |||| || |||| | || ||||| Sbjct 3051 T-GATCTGGGCTGCCACACCCGCCACCAATTTCCAATCGGGGACTTCCAGTAGCCATTTT 2993 Query 2397 TGGTCGCACGCGGGTTCGTTCGATTCGTCTCGGTGAGTAGAATCCAACGAGCCCTATTAC 2456 |||||| | || |||| ||||||||| | | | |||||| | ||||| || || Sbjct 2992 TGGTCGACCATGGACCCGTTGGATTCGTCTTGACGCGAGGAATCCGATGAGCCTAATCAC 2933 Query 2457 GGAATTTTAACACCGAAGGGTCGAC--CCTACAAGTCCCAATGAACCCAACACTTGTGGC 2514 || | | || ||||||| || |||||| | || | ||||| || || Sbjct 2932 GGGAGGGTGACCTTGAAGGGT-AACTTTCTACAACCACGAAAATAATCAACATGAGTAGC 2874 Query 2515 AGATACtttttttCCATAATTACACT-CTTCGATCGCGATT-TTGTTCCCAATCCAGAGG 2572 || || |||||||| | || | | | | || ||||| ||| || || | || | Sbjct 2873 AGGTAATTTTTTTCAAAAAATGTATTCCCTCAATCGCAATTAATGATCTCGGTCAACGTA 2814 Query 2573 TCCTAATCCGCATGACACCCAAACACAGTCTCGACGAAATCGGGACACGAGGGTGCTTTC 2632 ||| |||| |||| | | ||| |||||||| ||| | ||| | ||||| |||| Sbjct 2813 TCCGAATCTGCATCAATACTAAATCGAGTCTCGAGTCAATTGCGACTC-AGGGTTGTTTC 2755 Query 2633 TTACATAACCTCAAAATGTCGTATAATCGAAATATTATTGCAATCCCCGAGTGTCTGGGT 2692 |||||||||| |||| || ||||| |||| || | || |||| |||| | | Sbjct 2754 --ACATAACCTCCAAATATCACATAATTGAAAAATGAAAACAGACCCCACGTGTTGGTAT 2697 Query 2693 TCGTTGAATT 2702 |||||| ||| Sbjct 2696 TCGTTGGATT 2687 >seq6422 Length=30189 Score = 134 bits (148), Expect = 3e-28 Identities = 334/490 (68%), Gaps = 18/490 (4%) Strand=Plus/Minus Query 2220 CTTAAAGAGGtatataatagtatataaagctagctatatagctataaatactattgctat 2279 |||||||||||||| ||||| ||||| ||||| | ||||| |||| ||||||||| Sbjct 21149 CTTAAAGAGGTATA-AATAGCATATAGTATAAGCTA-ACAGCTAGAAATG-TATTGCTAT 21093 Query 2280 aag-catagacactataagctatataagtatTTAAAGTATAAGCATAAGCTGAGGTGGGA 2338 | | ||||| || || ||| ||||| | || || ||||| ||||||||||||||| || Sbjct 21092 AGGGCATAGCCAATAAAAGTTATATGAAAATATA--GTATA-GCATAAGCTGAGGTGAGA 21036 Query 2339 TTGGAATTGGCCGCCACACCTGCCACACCTGTCCAGA--GGCACTTGCGCGAGGAATTTT 2396 | | | ||| |||||||| ||||| | |||| || |||| | || ||||| Sbjct 21035 T-GATCTGGGCTGCCACACCCGCCACCAATTTCCAATCGGGGACTTCCAGTAGCCATTTT 20977 Query 2397 TGGTCGCACGCGGGTTCGTTCGATTCGTCTCGGTGAGTAGAATCCAACGAGCCCTATTAC 2456 |||||| | || |||| ||||||||| | | | |||||| | ||||| || || Sbjct 20976 TGGTCGACCATGGACCCGTTGGATTCGTCTTGACGCGAGGAATCCGATGAGCCTAATCAC 20917 Query 2457 GGAATTTTAACACCGAAGGGTCGAC--CCTACAAGTCCCAATGAACCCAACACTTGTGGC 2514 || | | || ||||||| || |||||| | || | ||||| || || Sbjct 20916 GGGAGGGTGACCTTGAAGGGT-AACTTTCTACAACCACGAAAATAATCAACATGAGTAGC 20858 Query 2515 AGATACtttttttCCATAATTACACT-CTTCGATCGCGATT-TTGTTCCCAATCCAGAGG 2572 || || |||||||| | || | | | | || ||||| ||| || || | || | Sbjct 20857 AGGTAATTTTTTTCAAAAAATGTATTCCCTCAATCGCAATTAATGATCTCGGTCAACGTA 20798 Query 2573 TCCTAATCCGCATGACACCCAAACACAGTCTCGACGAAATCGGGACACGAGGGTGCTTTC 2632 ||| |||| |||| | | ||| |||||||| ||| | ||| | ||||| |||| Sbjct 20797 TCCGAATCTGCATCAATACTAAATCGAGTCTCGAGTCAATTGCGACTC-AGGGTTGTTTC 20739 Query 2633 TTACATAACCTCAAAATGTCGTATAATCGAAATATTATTGCAATCCCCGAGTGTCTGGGT 2692 |||||||||| |||| || ||||| |||| || | || |||| |||| | | Sbjct 20738 --ACATAACCTCCAAATATCACATAATTGAAAAATGAAAACAGACCCCACGTGTTGGTAT 20681 Query 2693 TCGTTGAATT 2702 |||||| ||| Sbjct 20680 TCGTTGGATT 20671 >seq16437 Length=3918 Score = 93.3 bits (102), Expect = 8e-16 Identities = 115/148 (78%), Gaps = 7/148 (5%) Strand=Plus/Minus Query 2220 CTTAAAGAGGtatataatagtatataaagctagctatatagctataaatactattgctat 2279 |||||||||||||| ||||| | ||| | |||||||||||| || |||| |||| || Sbjct 1158 CTTAAAGAGGTATA-AATAGGAAATAGAACTAGCTATATAGTTAGAAATG-TATTATAAT 1101 Query 2280 aagcatagacactataagctata-taagtatTTAAAGTATAAGCATAAGCTGAGGTGGGA 2338 |||| ||| || || ||| |||| ||| | | | ||||||| |||||||||||| ||| Sbjct 1100 AAGCGTAGTCA-TAAAAG-TATAGTAAATTATAATAGTATAAT-ATAAGCTGAGGTTGGA 1044 Query 2339 TTGGAATTGGCCGCCACACCTGCCACAC 2366 |||| | ||||| ||||||| |||| Sbjct 1043 CTGGATATACCCGCC-CACCTGCTACAC 1017 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 9072638992740