Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Operophtera_20brumata_20[genbank_20GCA_5F001266575.1_202015-08-11]
25,801 sequences; 638,207,720 total letters
Query= NC_008897.1
Length=2871
Score E
Sequences producing significant alignments: (Bits) Value
seq9855 138 2e-29
seq6422 134 3e-28
seq16437 93.3 8e-16
>seq9855
Length=15086
Score = 138 bits (152), Expect = 2e-29
Identities = 335/490 (68%), Gaps = 18/490 (4%)
Strand=Plus/Minus
Query 2220 CTTAAAGAGGtatataatagtatataaagctagctatatagctataaatactattgctat 2279
|||||||||||||| ||||| ||||| | ||||| | ||||| |||| |||||||||
Sbjct 3165 CTTAAAGAGGTATA-AATAGCATATAGTGTAAGCTA-ACAGCTAGAAATG-TATTGCTAT 3109
Query 2280 aag-catagacactataagctatataagtatTTAAAGTATAAGCATAAGCTGAGGTGGGA 2338
| | ||||| || || ||| ||||| | || || ||||| ||||||||||||||| ||
Sbjct 3108 AGGGCATAGCCAATAAAAGTTATATGAAAATATA--GTATA-GCATAAGCTGAGGTGTGA 3052
Query 2339 TTGGAATTGGCCGCCACACCTGCCACACCTGTCCAGA--GGCACTTGCGCGAGGAATTTT 2396
| | | ||| |||||||| ||||| | |||| || |||| | || |||||
Sbjct 3051 T-GATCTGGGCTGCCACACCCGCCACCAATTTCCAATCGGGGACTTCCAGTAGCCATTTT 2993
Query 2397 TGGTCGCACGCGGGTTCGTTCGATTCGTCTCGGTGAGTAGAATCCAACGAGCCCTATTAC 2456
|||||| | || |||| ||||||||| | | | |||||| | ||||| || ||
Sbjct 2992 TGGTCGACCATGGACCCGTTGGATTCGTCTTGACGCGAGGAATCCGATGAGCCTAATCAC 2933
Query 2457 GGAATTTTAACACCGAAGGGTCGAC--CCTACAAGTCCCAATGAACCCAACACTTGTGGC 2514
|| | | || ||||||| || |||||| | || | ||||| || ||
Sbjct 2932 GGGAGGGTGACCTTGAAGGGT-AACTTTCTACAACCACGAAAATAATCAACATGAGTAGC 2874
Query 2515 AGATACtttttttCCATAATTACACT-CTTCGATCGCGATT-TTGTTCCCAATCCAGAGG 2572
|| || |||||||| | || | | | | || ||||| ||| || || | || |
Sbjct 2873 AGGTAATTTTTTTCAAAAAATGTATTCCCTCAATCGCAATTAATGATCTCGGTCAACGTA 2814
Query 2573 TCCTAATCCGCATGACACCCAAACACAGTCTCGACGAAATCGGGACACGAGGGTGCTTTC 2632
||| |||| |||| | | ||| |||||||| ||| | ||| | ||||| ||||
Sbjct 2813 TCCGAATCTGCATCAATACTAAATCGAGTCTCGAGTCAATTGCGACTC-AGGGTTGTTTC 2755
Query 2633 TTACATAACCTCAAAATGTCGTATAATCGAAATATTATTGCAATCCCCGAGTGTCTGGGT 2692
|||||||||| |||| || ||||| |||| || | || |||| |||| | |
Sbjct 2754 --ACATAACCTCCAAATATCACATAATTGAAAAATGAAAACAGACCCCACGTGTTGGTAT 2697
Query 2693 TCGTTGAATT 2702
|||||| |||
Sbjct 2696 TCGTTGGATT 2687
>seq6422
Length=30189
Score = 134 bits (148), Expect = 3e-28
Identities = 334/490 (68%), Gaps = 18/490 (4%)
Strand=Plus/Minus
Query 2220 CTTAAAGAGGtatataatagtatataaagctagctatatagctataaatactattgctat 2279
|||||||||||||| ||||| ||||| ||||| | ||||| |||| |||||||||
Sbjct 21149 CTTAAAGAGGTATA-AATAGCATATAGTATAAGCTA-ACAGCTAGAAATG-TATTGCTAT 21093
Query 2280 aag-catagacactataagctatataagtatTTAAAGTATAAGCATAAGCTGAGGTGGGA 2338
| | ||||| || || ||| ||||| | || || ||||| ||||||||||||||| ||
Sbjct 21092 AGGGCATAGCCAATAAAAGTTATATGAAAATATA--GTATA-GCATAAGCTGAGGTGAGA 21036
Query 2339 TTGGAATTGGCCGCCACACCTGCCACACCTGTCCAGA--GGCACTTGCGCGAGGAATTTT 2396
| | | ||| |||||||| ||||| | |||| || |||| | || |||||
Sbjct 21035 T-GATCTGGGCTGCCACACCCGCCACCAATTTCCAATCGGGGACTTCCAGTAGCCATTTT 20977
Query 2397 TGGTCGCACGCGGGTTCGTTCGATTCGTCTCGGTGAGTAGAATCCAACGAGCCCTATTAC 2456
|||||| | || |||| ||||||||| | | | |||||| | ||||| || ||
Sbjct 20976 TGGTCGACCATGGACCCGTTGGATTCGTCTTGACGCGAGGAATCCGATGAGCCTAATCAC 20917
Query 2457 GGAATTTTAACACCGAAGGGTCGAC--CCTACAAGTCCCAATGAACCCAACACTTGTGGC 2514
|| | | || ||||||| || |||||| | || | ||||| || ||
Sbjct 20916 GGGAGGGTGACCTTGAAGGGT-AACTTTCTACAACCACGAAAATAATCAACATGAGTAGC 20858
Query 2515 AGATACtttttttCCATAATTACACT-CTTCGATCGCGATT-TTGTTCCCAATCCAGAGG 2572
|| || |||||||| | || | | | | || ||||| ||| || || | || |
Sbjct 20857 AGGTAATTTTTTTCAAAAAATGTATTCCCTCAATCGCAATTAATGATCTCGGTCAACGTA 20798
Query 2573 TCCTAATCCGCATGACACCCAAACACAGTCTCGACGAAATCGGGACACGAGGGTGCTTTC 2632
||| |||| |||| | | ||| |||||||| ||| | ||| | ||||| ||||
Sbjct 20797 TCCGAATCTGCATCAATACTAAATCGAGTCTCGAGTCAATTGCGACTC-AGGGTTGTTTC 20739
Query 2633 TTACATAACCTCAAAATGTCGTATAATCGAAATATTATTGCAATCCCCGAGTGTCTGGGT 2692
|||||||||| |||| || ||||| |||| || | || |||| |||| | |
Sbjct 20738 --ACATAACCTCCAAATATCACATAATTGAAAAATGAAAACAGACCCCACGTGTTGGTAT 20681
Query 2693 TCGTTGAATT 2702
|||||| |||
Sbjct 20680 TCGTTGGATT 20671
>seq16437
Length=3918
Score = 93.3 bits (102), Expect = 8e-16
Identities = 115/148 (78%), Gaps = 7/148 (5%)
Strand=Plus/Minus
Query 2220 CTTAAAGAGGtatataatagtatataaagctagctatatagctataaatactattgctat 2279
|||||||||||||| ||||| | ||| | |||||||||||| || |||| |||| ||
Sbjct 1158 CTTAAAGAGGTATA-AATAGGAAATAGAACTAGCTATATAGTTAGAAATG-TATTATAAT 1101
Query 2280 aagcatagacactataagctata-taagtatTTAAAGTATAAGCATAAGCTGAGGTGGGA 2338
|||| ||| || || ||| |||| ||| | | | ||||||| |||||||||||| |||
Sbjct 1100 AAGCGTAGTCA-TAAAAG-TATAGTAAATTATAATAGTATAAT-ATAAGCTGAGGTTGGA 1044
Query 2339 TTGGAATTGGCCGCCACACCTGCCACAC 2366
|||| | ||||| ||||||| ||||
Sbjct 1043 CTGGATATACCCGCC-CACCTGCTACAC 1017
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 9072638992740
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |