Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Operophtera_20brumata_20[genbank_20GCA_5F001266575.1_202015-08-11] 25,801 sequences; 638,207,720 total letters Query= NC_008898.1 Length=2875 Score E Sequences producing significant alignments: (Bits) Value seq6422 132 9e-28 seq9855 129 1e-26 seq2447 114 2e-22 >seq6422 Length=30189 Score = 132 bits (146), Expect = 9e-28 Identities = 101/116 (87%), Gaps = 5/116 (4%) Strand=Plus/Minus Query 1268 ATAGCCTTATATTATTTTCCGTGGCTTTGGCATTTTATATATAACTCTTTACATAAGTTT 1327 ||||| |||||||||| |||||||| ||| ||||||||| ||||||||||||||||||| Sbjct 21215 ATAGCTCTATATTATTTCCCGTGGCTGTGGTATTTTATATGTAACTCTTTACATAAGTTT 21156 Query 1328 AAATATCTTAAAGAGGTAAATAAATA--ATATAGTATTAGCTATATAGCTAGGAAT 1381 | ||||||||||||||| ||||||| ||||||||| ||||| | |||||| ||| Sbjct 21155 ATATATCTTAAAGAGGT--ATAAATAGCATATAGTATAAGCTA-ACAGCTAGAAAT 21103 >seq9855 Length=15086 Score = 129 bits (142), Expect = 1e-26 Identities = 100/116 (86%), Gaps = 5/116 (4%) Strand=Plus/Minus Query 1268 ATAGCCTTATATTATTTTCCGTGGCTTTGGCATTTTATATATAACTCTTTACATAAGTTT 1327 ||||| |||||||||| |||||||| ||| ||||||||| ||||||||||||||||||| Sbjct 3231 ATAGCTCTATATTATTTCCCGTGGCTGTGGTATTTTATATGTAACTCTTTACATAAGTTT 3172 Query 1328 AAATATCTTAAAGAGGTAAATAAATA--ATATAGTATTAGCTATATAGCTAGGAAT 1381 | ||||||||||||||| ||||||| ||||||| | ||||| | |||||| ||| Sbjct 3171 ATATATCTTAAAGAGGT--ATAAATAGCATATAGTGTAAGCTA-ACAGCTAGAAAT 3119 >seq2447 Length=64305 Score = 114 bits (126), Expect = 2e-22 Identities = 110/138 (80%), Gaps = 5/138 (4%) Strand=Plus/Plus Query 1246 CATTTCCATTCTAGTATTTCCTATAGCCTTATATTATTTTCCGTGGCTTTGGCATTTTAT 1305 ||| || ||||||| |||| ||||||| |||| |||| |||||| ||| ||||| Sbjct 3137 CATCTCTATTCTAG-ATTTGCTATAGCTCTATACGATTTCTTGTGGCTGTGGTTATTTAT 3195 Query 1306 ATATAACTCTTTACATAAGTTTAAATATCTTAAAGAGGTAAATAAATA--ATATAGTATT 1363 || ||||||||| ||||||||| ||||||||||||||| ||||||| | |||| | | Sbjct 3196 ATCAAACTCTTTAAATAAGTTTATATATCTTAAAGAGGT--ATAAATAGGAAATAGAACT 3253 Query 1364 AGCTATATAGCTAGGAAT 1381 |||||||||| ||| ||| Sbjct 3254 AGCTATATAGTTAGAAAT 3271 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 9085435380600