Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Operophtera_20brumata_20[genbank_20GCA_5F001266575.1_202015-08-11] 25,801 sequences; 638,207,720 total letters Query= NC_008900.1 Length=2924 Score E Sequences producing significant alignments: (Bits) Value seq9855 154 3e-34 seq6422 154 3e-34 seq2447 152 9e-34 seq1896 93.3 8e-16 seq1668 77.0 6e-11 >seq9855 Length=15086 Score = 154 bits (170), Expect = 3e-34 Identities = 191/251 (76%), Gaps = 13/251 (5%) Strand=Plus/Plus Query 1619 GTGGCGGGTTTGGCAGCC-AGTTCCAATCCCATCAGAGCTTATGCTA----AT-TACTCG 1672 ||||||||| |||||||| || || ||| || | ||||||||||| || | || Sbjct 3027 GTGGCGGGTGTGGCAGCCCAGATC--ATCACACCTCAGCTTATGCTATACTATATTTTCA 3084 Query 1673 CTTAGCCTCTATCGGCTGTACT-TATAGCGATACATTCCTGCCTACATAGCTAATGCTTA 1731 || | | ||| |||| | | |||||| ||||||| || || ||||| | || | Sbjct 3085 TATAACTTTTATTGGCTATGCCCTATAGCAATACATTTCTAGCTGT-TAGCTTACACT-A 3142 Query 1732 TATCCTATATTTACCTCTTTAAGATATATAAACTTATTTAAAGAGTTAAATATAAAATAC 1791 ||| |||| | |||||||||||||||||||||||||| |||||||||| ||||||||||| Sbjct 3143 TATGCTATTTATACCTCTTTAAGATATATAAACTTATGTAAAGAGTTACATATAAAATAC 3202 Query 1792 CACAGCCACAGGAAATTCTATAGTTCTATAGAAAATCTAG-AATAGAAATATGCAGCCTC 1850 ||||||||| |||||| ||||| |||| | || ||||| | ||| ||| |||||| | Sbjct 3203 CACAGCCACGGGAAATAATATAGAGCTATGGTAAGTCTAGTACTAG-AATTGGCAGCCAC 3261 Query 1851 AGCTGCCACAT 1861 |||||||| Sbjct 3262 GTTTGCCACAT 3272 >seq6422 Length=30189 Score = 154 bits (170), Expect = 3e-34 Identities = 191/251 (76%), Gaps = 13/251 (5%) Strand=Plus/Plus Query 1619 GTGGCGGGTTTGGCAGCC-AGTTCCAATCCCATCAGAGCTTATGCTA----AT-TACTCG 1672 ||||||||| |||||||| || || ||| || | ||||||||||| || | || Sbjct 21011 GTGGCGGGTGTGGCAGCCCAGATC--ATCTCACCTCAGCTTATGCTATACTATATTTTCA 21068 Query 1673 CTTAGCCTCTATCGGCTGTACT-TATAGCGATACATTCCTGCCTACATAGCTAATGCTTA 1731 || | | ||| |||| | | |||||| ||||||| || || ||||| || || | Sbjct 21069 TATAACTTTTATTGGCTATGCCCTATAGCAATACATTTCTAGCTGT-TAGCTTATACT-A 21126 Query 1732 TATCCTATATTTACCTCTTTAAGATATATAAACTTATTTAAAGAGTTAAATATAAAATAC 1791 ||| |||| | |||||||||||||||||||||||||| |||||||||| ||||||||||| Sbjct 21127 TATGCTATTTATACCTCTTTAAGATATATAAACTTATGTAAAGAGTTACATATAAAATAC 21186 Query 1792 CACAGCCACAGGAAATTCTATAGTTCTATAGAAAATCTAG-AATAGAAATATGCAGCCTC 1850 ||||||||| |||||| ||||| |||| | || ||||| | ||| ||| |||||| | Sbjct 21187 CACAGCCACGGGAAATAATATAGAGCTATGGTAAGTCTAGTACTAG-AATTGGCAGCCAC 21245 Query 1851 AGCTGCCACAT 1861 | |||||| Sbjct 21246 GTTTACCACAT 21256 >seq2447 Length=64305 Score = 152 bits (168), Expect = 9e-34 Identities = 118/139 (85%), Gaps = 1/139 (1%) Strand=Plus/Minus Query 1702 ATACATTCCTGCCTACATAGCTAATGCTTATATCCTATATTTACCTCTTTAAGATATATA 1761 ||||||| || ||| ||||||| | || || |||||| | ||||||||||||||||||| Sbjct 3275 ATACATTTCTAACTATATAGCTAGTTCT-ATTTCCTATTTATACCTCTTTAAGATATATA 3217 Query 1762 AACTTATTTAAAGAGTTAAATATAAAATACCACAGCCACAGGAAATTCTATAGTTCTATA 1821 ||||||||||||||||| ||||||| |||||||||||| ||||| ||||| ||||| Sbjct 3216 AACTTATTTAAAGAGTTTGATATAAATAACCACAGCCACAAGAAATCGTATAGAGCTATA 3157 Query 1822 GAAAATCTAGAATAGAAAT 1840 | |||||||||||||| || Sbjct 3156 GCAAATCTAGAATAGAGAT 3138 >seq1896 Length=105120 Score = 93.3 bits (102), Expect = 8e-16 Identities = 96/126 (76%), Gaps = 11/126 (9%) Strand=Plus/Plus Query 1719 TAGCTAATGCTTATATCCTATATTTACCTCTTTAAGATATA----TAAACTTATTTAAAG 1774 |||||| |||| | ||||| | | || ||| |||||||| |||| ||||||||| Sbjct 45655 TAGCTAGTGCTATAACCCTATTTATTCCCCTTCAAGATATAAGTATAAAATTATTTAAAC 45714 Query 1775 AGTTAAATATAAAATACCACAGCCACAGGAAATTCTATAGTTCTATAGAAAATCTAGAAT 1834 |||||||||||||||||||| |||||| |||| |||||| |||||||| || Sbjct 45715 -------TATAAAATACCACAGCCACAAGAAATTATATAAAGCTATAGTAAATCTAGGAT 45767 Query 1835 AGAAAT 1840 |||||| Sbjct 45768 AGAAAT 45773 >seq1668 Length=82418 Score = 77.0 bits (84), Expect = 6e-11 Identities = 79/104 (76%), Gaps = 11/104 (11%) Strand=Plus/Minus Query 1743 TACCTCTTTAAGATATA----TAAACTTATTTAAAGAGTTAAATATAAAATACCACAGCC 1798 |||||||| |||||||| |||| ||||| ||| |||||||||||||| || Sbjct 67450 TACCTCTTCAAGATATAAGTATAAAATTATTAAAAC-------TATAAAATACCACACCC 67398 Query 1799 ACAGGAAATTCTATAGTTCTATAGAAAATCTAGAATAGAAATAT 1842 ||| ||||| |||| |||||| |||||||| ||||||| || Sbjct 67397 ACAAGAAATCATATAAAGCTATAGTAAATCTAGGATAGAAACAT 67354 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 9242191131885