Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Operophtera_20brumata_20[genbank_20GCA_5F001266575.1_202015-08-11] 25,801 sequences; 638,207,720 total letters Query= NC_008908.1 Length=3083 Score E Sequences producing significant alignments: (Bits) Value seq9855 176 9e-41 seq6422 172 1e-39 seq2447 96.9 7e-17 >seq9855 Length=15086 Score = 176 bits (194), Expect = 9e-41 Identities = 246/342 (72%), Gaps = 11/342 (3%) Strand=Plus/Plus Query 1152 GGCTCATTGATCTCCTCTCGTCGAGACGAATCCAACGAGCCCATATGCGTCCCAAAATTC 1211 ||||||| | ||||| |||| |||||||||||||| | |||| || || ||||| Sbjct 2940 GGCTCATCGGATTCCTCGCGTCAAGACGAATCCAACGGGTCCATGGTCGACCAAAAATGG 2999 Query 1212 CCATTCAAAGTGCTCGATT--AACGGTGTGGCGGGTGTGGCGGCTCACACGCGTCCCGCC 1269 | | | |||| | ||||| || |||||||||||||| || || | | || | || Sbjct 3000 CTACTGGAAGTCCCCGATTGGAAATTGGTGGCGGGTGTGGCAGCCCAGAT-CATCACACC 3058 Query 1270 TCAGCTTATATTTATACTATATATATTCATACAGCTTTTACTGGCTATGCTCTATAGCAA 1329 ||||||||| | ||||||||| | ||||| | |||||| ||||||||| ||||||||| Sbjct 3059 TCAGCTTATGCT-ATACTATATTT--TCATATAACTTTTATTGGCTATGCCCTATAGCAA 3115 Query 1330 TATATTNNNNNNNNNNNNNNNNNNNNNNNNNCATATTTATTCCTCTTTAAAAAATATATA 1389 || ||| | ||||||| ||||||||| | ||||| | Sbjct 3116 TACATTTCTAGCTGTTAGCTTACACTATATGC-TATTTATACCTCTTTAAGATATATAAA 3174 Query 1390 ATTATCTAAAGAGTTATATATAAAATACCACAGCCACGAGAAATAATA-AGATTCTATAT 1448 |||| |||||||||| ||||||||||||||||||||| ||||||||| ||| |||| Sbjct 3175 CTTATGTAAAGAGTTACATATAAAATACCACAGCCACGGGAAATAATATAGA-GCTATGG 3233 Query 1449 TAAATCTAG-AATAGCGTTGGCTGGACACTTCCGCCACATCA 1489 ||| ||||| | ||| ||||| | ||| | ||||||||| Sbjct 3234 TAAGTCTAGTACTAGAATTGGC-AGCCACGTTTGCCACATCA 3274 >seq6422 Length=30189 Score = 172 bits (190), Expect = 1e-39 Identities = 245/342 (72%), Gaps = 11/342 (3%) Strand=Plus/Plus Query 1152 GGCTCATTGATCTCCTCTCGTCGAGACGAATCCAACGAGCCCATATGCGTCCCAAAATTC 1211 ||||||| | ||||| |||| |||||||||||||| | |||| || || ||||| Sbjct 20924 GGCTCATCGGATTCCTCGCGTCAAGACGAATCCAACGGGTCCATGGTCGACCAAAAATGG 20983 Query 1212 CCATTCAAAGTGCTCGATT--AACGGTGTGGCGGGTGTGGCGGCTCACACGCGTCCCGCC 1269 | | | |||| | ||||| || |||||||||||||| || || | | || | || Sbjct 20984 CTACTGGAAGTCCCCGATTGGAAATTGGTGGCGGGTGTGGCAGCCCAGAT-CATCTCACC 21042 Query 1270 TCAGCTTATATTTATACTATATATATTCATACAGCTTTTACTGGCTATGCTCTATAGCAA 1329 ||||||||| | ||||||||| | ||||| | |||||| ||||||||| ||||||||| Sbjct 21043 TCAGCTTATGCT-ATACTATATTT--TCATATAACTTTTATTGGCTATGCCCTATAGCAA 21099 Query 1330 TATATTNNNNNNNNNNNNNNNNNNNNNNNNNCATATTTATTCCTCTTTAAAAAATATATA 1389 || ||| | ||||||| ||||||||| | ||||| | Sbjct 21100 TACATTTCTAGCTGTTAGCTTATACTATATGC-TATTTATACCTCTTTAAGATATATAAA 21158 Query 1390 ATTATCTAAAGAGTTATATATAAAATACCACAGCCACGAGAAATAATA-AGATTCTATAT 1448 |||| |||||||||| ||||||||||||||||||||| ||||||||| ||| |||| Sbjct 21159 CTTATGTAAAGAGTTACATATAAAATACCACAGCCACGGGAAATAATATAGA-GCTATGG 21217 Query 1449 TAAATCTAG-AATAGCGTTGGCTGGACACTTCCGCCACATCA 1489 ||| ||||| | ||| ||||| | ||| | |||||||| Sbjct 21218 TAAGTCTAGTACTAGAATTGGC-AGCCACGTTTACCACATCA 21258 >seq2447 Length=64305 Score = 96.9 bits (106), Expect = 7e-17 Identities = 87/107 (81%), Gaps = 2/107 (2%) Strand=Plus/Minus Query 1363 TATTTATTCCTCTTTAAAAAATATATAATTATCTAAAGAGTTATATATAAAATACCACAG 1422 ||||||| ||||||||| | ||||| | |||| ||||||||| ||||||| ||||||| Sbjct 3241 TATTTATACCTCTTTAAGATATATAAACTTATTTAAAGAGTTTGATATAAATAACCACAG 3182 Query 1423 CCACGAGAAATAATA-AGATTCTATATTAAATCTAGAATAGCGTTGG 1468 |||| |||||| || ||| ||||| ||||||||||||| | ||| Sbjct 3181 CCACAAGAAATCGTATAGAG-CTATAGCAAATCTAGAATAGAGATGG 3136 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 9750847549320