Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Operophtera_20brumata_20[genbank_20GCA_5F001266575.1_202015-08-11]
25,801 sequences; 638,207,720 total letters
Query= NC_008908.1
Length=3083
Score E
Sequences producing significant alignments: (Bits) Value
seq9855 176 9e-41
seq6422 172 1e-39
seq2447 96.9 7e-17
>seq9855
Length=15086
Score = 176 bits (194), Expect = 9e-41
Identities = 246/342 (72%), Gaps = 11/342 (3%)
Strand=Plus/Plus
Query 1152 GGCTCATTGATCTCCTCTCGTCGAGACGAATCCAACGAGCCCATATGCGTCCCAAAATTC 1211
||||||| | ||||| |||| |||||||||||||| | |||| || || |||||
Sbjct 2940 GGCTCATCGGATTCCTCGCGTCAAGACGAATCCAACGGGTCCATGGTCGACCAAAAATGG 2999
Query 1212 CCATTCAAAGTGCTCGATT--AACGGTGTGGCGGGTGTGGCGGCTCACACGCGTCCCGCC 1269
| | | |||| | ||||| || |||||||||||||| || || | | || | ||
Sbjct 3000 CTACTGGAAGTCCCCGATTGGAAATTGGTGGCGGGTGTGGCAGCCCAGAT-CATCACACC 3058
Query 1270 TCAGCTTATATTTATACTATATATATTCATACAGCTTTTACTGGCTATGCTCTATAGCAA 1329
||||||||| | ||||||||| | ||||| | |||||| ||||||||| |||||||||
Sbjct 3059 TCAGCTTATGCT-ATACTATATTT--TCATATAACTTTTATTGGCTATGCCCTATAGCAA 3115
Query 1330 TATATTNNNNNNNNNNNNNNNNNNNNNNNNNCATATTTATTCCTCTTTAAAAAATATATA 1389
|| ||| | ||||||| ||||||||| | ||||| |
Sbjct 3116 TACATTTCTAGCTGTTAGCTTACACTATATGC-TATTTATACCTCTTTAAGATATATAAA 3174
Query 1390 ATTATCTAAAGAGTTATATATAAAATACCACAGCCACGAGAAATAATA-AGATTCTATAT 1448
|||| |||||||||| ||||||||||||||||||||| ||||||||| ||| ||||
Sbjct 3175 CTTATGTAAAGAGTTACATATAAAATACCACAGCCACGGGAAATAATATAGA-GCTATGG 3233
Query 1449 TAAATCTAG-AATAGCGTTGGCTGGACACTTCCGCCACATCA 1489
||| ||||| | ||| ||||| | ||| | |||||||||
Sbjct 3234 TAAGTCTAGTACTAGAATTGGC-AGCCACGTTTGCCACATCA 3274
>seq6422
Length=30189
Score = 172 bits (190), Expect = 1e-39
Identities = 245/342 (72%), Gaps = 11/342 (3%)
Strand=Plus/Plus
Query 1152 GGCTCATTGATCTCCTCTCGTCGAGACGAATCCAACGAGCCCATATGCGTCCCAAAATTC 1211
||||||| | ||||| |||| |||||||||||||| | |||| || || |||||
Sbjct 20924 GGCTCATCGGATTCCTCGCGTCAAGACGAATCCAACGGGTCCATGGTCGACCAAAAATGG 20983
Query 1212 CCATTCAAAGTGCTCGATT--AACGGTGTGGCGGGTGTGGCGGCTCACACGCGTCCCGCC 1269
| | | |||| | ||||| || |||||||||||||| || || | | || | ||
Sbjct 20984 CTACTGGAAGTCCCCGATTGGAAATTGGTGGCGGGTGTGGCAGCCCAGAT-CATCTCACC 21042
Query 1270 TCAGCTTATATTTATACTATATATATTCATACAGCTTTTACTGGCTATGCTCTATAGCAA 1329
||||||||| | ||||||||| | ||||| | |||||| ||||||||| |||||||||
Sbjct 21043 TCAGCTTATGCT-ATACTATATTT--TCATATAACTTTTATTGGCTATGCCCTATAGCAA 21099
Query 1330 TATATTNNNNNNNNNNNNNNNNNNNNNNNNNCATATTTATTCCTCTTTAAAAAATATATA 1389
|| ||| | ||||||| ||||||||| | ||||| |
Sbjct 21100 TACATTTCTAGCTGTTAGCTTATACTATATGC-TATTTATACCTCTTTAAGATATATAAA 21158
Query 1390 ATTATCTAAAGAGTTATATATAAAATACCACAGCCACGAGAAATAATA-AGATTCTATAT 1448
|||| |||||||||| ||||||||||||||||||||| ||||||||| ||| ||||
Sbjct 21159 CTTATGTAAAGAGTTACATATAAAATACCACAGCCACGGGAAATAATATAGA-GCTATGG 21217
Query 1449 TAAATCTAG-AATAGCGTTGGCTGGACACTTCCGCCACATCA 1489
||| ||||| | ||| ||||| | ||| | ||||||||
Sbjct 21218 TAAGTCTAGTACTAGAATTGGC-AGCCACGTTTACCACATCA 21258
>seq2447
Length=64305
Score = 96.9 bits (106), Expect = 7e-17
Identities = 87/107 (81%), Gaps = 2/107 (2%)
Strand=Plus/Minus
Query 1363 TATTTATTCCTCTTTAAAAAATATATAATTATCTAAAGAGTTATATATAAAATACCACAG 1422
||||||| ||||||||| | ||||| | |||| ||||||||| ||||||| |||||||
Sbjct 3241 TATTTATACCTCTTTAAGATATATAAACTTATTTAAAGAGTTTGATATAAATAACCACAG 3182
Query 1423 CCACGAGAAATAATA-AGATTCTATATTAAATCTAGAATAGCGTTGG 1468
|||| |||||| || ||| ||||| ||||||||||||| | |||
Sbjct 3181 CCACAAGAAATCGTATAGAG-CTATAGCAAATCTAGAATAGAGATGG 3136
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 9750847549320
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |