Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Operophtera_20brumata_20[genbank_20GCA_5F001266575.1_202015-08-11] 25,801 sequences; 638,207,720 total letters Query= NC_008909.1 Length=3111 Score E Sequences producing significant alignments: (Bits) Value seq6422 174 3e-40 seq9855 168 1e-38 seq2447 127 4e-26 seq1896 107 4e-20 seq16437 102 2e-18 seq7981 89.7 1e-14 seq171 89.7 1e-14 >seq6422 Length=30189 Score = 174 bits (192), Expect = 3e-40 Identities = 213/279 (76%), Gaps = 9/279 (3%) Strand=Plus/Minus Query 2427 CTAGAATTTCTATAGCTTCA-ATTATTTCCTGTGGCTGTGGTATTTTATTATTAACTCTT 2485 ||||| || | |||||| | ||||||||| |||||||||||||||||| |||||||| Sbjct 21226 CTAGACTTACCATAGCTCTATATTATTTCCCGTGGCTGTGGTATTTTATATGTAACTCTT 21167 Query 2486 TTAATAGTTATAAATATCTTAAAGAGGTATAAATAGTAAATAGCACTAGCTATATGCCTA 2545 | ||| | || ||||||||||||||||||||||| | |||| | ||||| | ||| Sbjct 21166 TACATAAGTTTATATATCTTAAAGAGGTATAAATAGCATATAGTATAAGCTA-ACAGCTA 21108 Query 2546 GGAATATATTGCTATA-GGTATAGACATTAAAGGCTATA-GAATATAAAGTATTAATATA 2603 | ||| |||||||||| || |||| || |||| | |||| ||| ||| |||| || ||| Sbjct 21107 GAAATGTATTGCTATAGGGCATAGCCAATAAAAGTTATATGAAAATATAGTA-TAGCATA 21049 Query 2604 AGTTGCGATGGGACGGAATAAAGCTGCCACACCCGCCA-CATGTGTCACTTGGGCACTTT 2662 || || | || || || |||||||||||||||| || | || | ||| |||| Sbjct 21048 AGCTGAGGTGAGA-TGATCTGGGCTGCCACACCCGCCACCAATTTCCAATCGGGGACTTC 20990 Query 2663 CAGTAGGAATTTTCGGACGATCCATGGA-TCGTTGGATT 2700 |||||| ||||| || ||| ||||||| ||||||||| Sbjct 20989 CAGTAGCCATTTTTGGTCGA-CCATGGACCCGTTGGATT 20952 >seq9855 Length=15086 Score = 168 bits (186), Expect = 1e-38 Identities = 212/279 (76%), Gaps = 9/279 (3%) Strand=Plus/Minus Query 2427 CTAGAATTTCTATAGCTTCA-ATTATTTCCTGTGGCTGTGGTATTTTATTATTAACTCTT 2485 ||||| || | |||||| | ||||||||| |||||||||||||||||| |||||||| Sbjct 3242 CTAGACTTACCATAGCTCTATATTATTTCCCGTGGCTGTGGTATTTTATATGTAACTCTT 3183 Query 2486 TTAATAGTTATAAATATCTTAAAGAGGTATAAATAGTAAATAGCACTAGCTATATGCCTA 2545 | ||| | || ||||||||||||||||||||||| | |||| ||||| | ||| Sbjct 3182 TACATAAGTTTATATATCTTAAAGAGGTATAAATAGCATATAGTGTAAGCTA-ACAGCTA 3124 Query 2546 GGAATATATTGCTATA-GGTATAGACATTAAAGGCTATA-GAATATAAAGTATTAATATA 2603 | ||| |||||||||| || |||| || |||| | |||| ||| ||| |||| || ||| Sbjct 3123 GAAATGTATTGCTATAGGGCATAGCCAATAAAAGTTATATGAAAATATAGTA-TAGCATA 3065 Query 2604 AGTTGCGATGGGACGGAATAAAGCTGCCACACCCGCCA-CATGTGTCACTTGGGCACTTT 2662 || || | || || || |||||||||||||||| || | || | ||| |||| Sbjct 3064 AGCTGAGGTGTGA-TGATCTGGGCTGCCACACCCGCCACCAATTTCCAATCGGGGACTTC 3006 Query 2663 CAGTAGGAATTTTCGGACGATCCATGGA-TCGTTGGATT 2700 |||||| ||||| || ||| ||||||| ||||||||| Sbjct 3005 CAGTAGCCATTTTTGGTCGA-CCATGGACCCGTTGGATT 2968 >seq2447 Length=64305 Score = 127 bits (140), Expect = 4e-26 Identities = 141/183 (77%), Gaps = 4/183 (2%) Strand=Plus/Plus Query 2422 CTATTCTAGAATTTCTATAGCTTCA-ATTATTTCCTGTGGCTGTGGTATTTTATTATTAA 2480 |||||||||| || |||||||| | | ||||| |||||||||||| ||||| || Sbjct 3142 CTATTCTAGATTTGCTATAGCTCTATACGATTTCTTGTGGCTGTGGTTATTTATATCAAA 3201 Query 2481 CTCTTTTAATAGTTATAAATATCTTAAAGAGGTATAAATAGTAAATAGCACTAGCTATAT 2540 |||||| |||| | || ||||||||||||||||||||||| |||||| ||||||||||| Sbjct 3202 CTCTTTAAATAAGTTTATATATCTTAAAGAGGTATAAATAGGAAATAGAACTAGCTATAT 3261 Query 2541 GCCTAGGAATATATTGCTATAGGTATAGACATTAAAGGCTA-TAGAATATAA-AGTATTA 2598 ||| ||| |||| ||| | ||| ||| ||| || || | ||||| |||| || Sbjct 3262 AGTTAGAAATGTATTATAATAAGCGTAGTCATATAAGTATAGTAAATTATAATAGTA-TA 3320 Query 2599 ATA 2601 ||| Sbjct 3321 ATA 3323 >seq1896 Length=105120 Score = 107 bits (118), Expect = 4e-20 Identities = 120/156 (77%), Gaps = 7/156 (4%) Strand=Plus/Minus Query 2422 CTATTCTAGAATTTCTATAGCTTCA-ATTATTTCCTGTGGCTGTGGTATTTTATTATT-A 2479 |||| ||||| || ||||||||| | || ||||| ||||||||||||||||||| || | Sbjct 45769 CTATCCTAGATTTACTATAGCTTTATATAATTTCTTGTGGCTGTGGTATTTTATAGTTTA 45710 Query 2480 ACTCTTTTAATAGTTATAAATATCTTAAAGAGGTATAAATAGTAA-ATAGCACTAGCTAT 2538 | | ||| ||| ||||| |||| ||| || |||||||| ||||||||||||| Sbjct 45709 AATAATTTTATACTTATA----TCTTGAAGGGGAATAAATAGGGTTATAGCACTAGCTAG 45654 Query 2539 ATGCCTAGGAATATATTGCTATAGGTATAGACATTA 2574 | |||| |||| |||||||||| || | ||||| Sbjct 45653 AGACCTAATAATAAATTGCTATAGTTAATGCCATTA 45618 >seq16437 Length=3918 Score = 102 bits (112), Expect = 2e-18 Identities = 118/154 (77%), Gaps = 4/154 (3%) Strand=Plus/Minus Query 2492 GTTATAAATATCTTAAAGAGGTATAAATAGTAAATAGCACTAGCTATATGCCTAGGAATA 2551 ||||| ||||||||||||||||||||||| |||||| ||||||||||| ||| ||| Sbjct 1169 GTTATTTATATCTTAAAGAGGTATAAATAGGAAATAGAACTAGCTATATAGTTAGAAATG 1110 Query 2552 TATTGCTATAGGTATAGACATTAAAGGCTA-TAGAATATAA-AGTATTAATATAAGTTGC 2609 |||| ||| | ||| ||| |||| || || | ||||| |||| ||||||||| || Sbjct 1109 TATTATAATAAGCGTAGTCATAAAAGTATAGTAAATTATAATAGTA-TAATATAAGCTGA 1051 Query 2610 GATGGGACGGAATAAAGCTGCCACACCCGCCACA 2643 | | |||| | ||| | | ||| |||| || ||| Sbjct 1050 GGTTGGACTGGATATACCCGCC-CACCTGCTACA 1018 >seq7981 Length=21338 Score = 89.7 bits (98), Expect = 1e-14 Identities = 111/148 (75%), Gaps = 13/148 (9%) Strand=Plus/Minus Query 2478 TAACTCTTTTAAT-----AGTTATAAATATCTTAAAGAGGTATAAATAGTAAATAGCACT 2532 ||||||||||||| |||| |||||||| ||||||| || |||||| | || | | | Sbjct 10340 TAACTCTTTTAATACCCAAGTT-TAAATATCCTAAAGAGATAGAAATAGGATATGGTATT 10282 Query 2533 AGCTATA----TGCCTAGGAATATATTGCTATAGGTATAGACATTAAAGGCTATA-GAAT 2587 ||||||| || |||| || ||| ||| |||||||| | ||||| |||||| |||| Sbjct 10281 AGCTATAGGTGTGGCTAGAAAGGTATAACTAAAGGTATAGCCGTTAAAAGCTATAGGAAT 10222 Query 2588 ATA--AAGTATTAATATAAGTTGCGATG 2613 ||| |||| ||||||| || |||| Sbjct 10221 ATATGGTGTATAAATATAAACTGTGATG 10194 >seq171 Length=184467 Score = 89.7 bits (98), Expect = 1e-14 Identities = 114/153 (75%), Gaps = 13/153 (8%) Strand=Plus/Plus Query 2422 CTATTCTAGAATTTCTATAGCTTCA----ATTATTTCCTGTGGCTGTGGTATTTTATTAT 2477 |||| ||||| || |||||||||| || ||||| |||||||||||||||||| Sbjct 158784 CTATCCTAGATTTAATATAGCTTCATAATATGATTTCTTGTGGCTGTGGTATTTTA---- 158839 Query 2478 TAACTCTTTTAATAGT-TATAAATATCTTAAAGAGGTATAAATA-GTAAATAGCACTAGC 2535 || | || |||| || || ||||| | |||||||||||||| | ||||||| | | Sbjct 158840 TAGTTTTTATAATTGTATACTTATATCCTGAAGAGGTATAAATAGGGTTATAGCACCAAC 158899 Query 2536 ---TATATGCCTAGGAATATATTGCTATAGGTA 2565 |||| || | |||||||||||||||||| Sbjct 158900 TATTATAGAACTGGTAATATATTGCTATAGGTA 158932 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 9840422264340