Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Operophtera_20brumata_20[genbank_20GCA_5F001266575.1_202015-08-11] 25,801 sequences; 638,207,720 total letters Query= NC_008911.1 Length=3130 Score E Sequences producing significant alignments: (Bits) Value seq9855 172 1e-39 seq6422 170 4e-39 seq2447 143 5e-31 seq16437 93.3 8e-16 seq1896 86.0 1e-13 >seq9855 Length=15086 Score = 172 bits (190), Expect = 1e-39 Identities = 197/253 (78%), Gaps = 10/253 (4%) Strand=Plus/Plus Query 902 TGGTGGCAGGCGTGGCAGCC-ATATCCAGTCTCACCATAGCTTATATTTATA-TATCATA 959 ||||||| || ||||||||| | ||| || |||| ||||||| | ||| ||| || Sbjct 3025 TGGTGGCGGGTGTGGCAGCCCAGATCA--TCACACCTCAGCTTATGCT-ATACTAT-ATT 3080 Query 960 CTCTTACTGCCTCTAGTGACTATACTG-ATAGCAATACATTTCTAGCTATTTAGCTAGCG 1018 || || | | || || |||| | |||||||||||||||||||| || |||| | Sbjct 3081 TTCATATAACTTTTATTGGCTATGCCCTATAGCAATACATTTCTAGCTGTT-AGCTTACA 3139 Query 1019 TTATAGTTTATTCATACCTCTTTAAGATAAATAATATTATGTAAAGAGTTATATATAAAA 1078 |||| |||| |||||||||||||||| |||| ||||||||||||||| |||||||| Sbjct 3140 CTATATGCTATTTATACCTCTTTAAGATATATAAACTTATGTAAAGAGTTACATATAAAA 3199 Query 1079 TACCACAGCCACGGGAAATAATATAGAGCTATAGTTGATCTAGGA-TATAGTTTGGCGGC 1137 |||||||||||||||||||||||||||||||| || ||||| | || | ||||| || Sbjct 3200 TACCACAGCCACGGGAAATAATATAGAGCTATGGTAAGTCTAGTACTAGA-ATTGGCAGC 3258 Query 1138 CACGCACGCCACA 1150 |||| |||||| Sbjct 3259 CACGTTTGCCACA 3271 >seq6422 Length=30189 Score = 170 bits (188), Expect = 4e-39 Identities = 191/244 (78%), Gaps = 10/244 (4%) Strand=Plus/Plus Query 902 TGGTGGCAGGCGTGGCAGCC-ATATCCAGTCTCACCATAGCTTATATTTATA-TATCATA 959 ||||||| || ||||||||| | ||| ||||||| ||||||| | ||| ||| || Sbjct 21009 TGGTGGCGGGTGTGGCAGCCCAGATCA--TCTCACCTCAGCTTATGCT-ATACTAT-ATT 21064 Query 960 CTCTTACTGCCTCTAGTGACTATACTG-ATAGCAATACATTTCTAGCTATTTAGCTAGCG 1018 || || | | || || |||| | |||||||||||||||||||| || |||| Sbjct 21065 TTCATATAACTTTTATTGGCTATGCCCTATAGCAATACATTTCTAGCTGTT-AGCTTATA 21123 Query 1019 TTATAGTTTATTCATACCTCTTTAAGATAAATAATATTATGTAAAGAGTTATATATAAAA 1078 |||| |||| |||||||||||||||| |||| ||||||||||||||| |||||||| Sbjct 21124 CTATATGCTATTTATACCTCTTTAAGATATATAAACTTATGTAAAGAGTTACATATAAAA 21183 Query 1079 TACCACAGCCACGGGAAATAATATAGAGCTATAGTTGATCTAGGA-TATAGTTTGGCGGC 1137 |||||||||||||||||||||||||||||||| || ||||| | || | ||||| || Sbjct 21184 TACCACAGCCACGGGAAATAATATAGAGCTATGGTAAGTCTAGTACTAGA-ATTGGCAGC 21242 Query 1138 CACG 1141 |||| Sbjct 21243 CACG 21246 >seq2447 Length=64305 Score = 143 bits (158), Expect = 5e-31 Identities = 146/187 (78%), Gaps = 5/187 (3%) Strand=Plus/Minus Query 976 TGACTATACTGATAGCAATACATTTCTAGCTATTTAGCTAGCGTTATAGTT--TATTCAT 1033 |||||| || || |||||||||||| |||| ||||||| || || || |||| || Sbjct 3292 TGACTACGCTTATTATAATACATTTCTAACTATATAGCTAG--TTCTATTTCCTATTTAT 3235 Query 1034 ACCTCTTTAAGATAAATAATATTATGTAAAGAGTTATATATAAAATACCACAGCCACGGG 1093 |||||||||||||| |||| |||| ||||||||| ||||||| ||||||||||| | Sbjct 3234 ACCTCTTTAAGATATATAAACTTATTTAAAGAGTTTGATATAAATAACCACAGCCACAAG 3175 Query 1094 AAATAATATAGAGCTATAGTTGATCTAGGATATAGTTTGGCGGCCACGCACGCCACAACT 1153 |||| ||||||||||||| |||||| ||| || | | | ||||| || ||||||| Sbjct 3174 AAATCGTATAGAGCTATAGCAAATCTAGAATAGAGATGGTCCGCCACCCA-ACCACAACA 3116 Query 1154 CTCATTT 1160 || |||| Sbjct 3115 CTAATTT 3109 >seq16437 Length=3918 Score = 93.3 bits (102), Expect = 8e-16 Identities = 179/261 (69%), Gaps = 36/261 (14%) Strand=Plus/Plus Query 904 GTGGCAGGCGTGGCAGCCATATCCAGTCTCACCATAGCTTATATTTATA-TATCATACTC 962 || ||||| | ||| | |||||||||| ||| |||||||||| ||| ||| ||| | Sbjct 1019 GTAGCAGGTG-GGCGGGTATATCCAGTCCAACCTCAGCTTATATT-ATACTATTATAAT- 1075 Query 963 TTACTGC-CTCTAGTGACTATACTGATAGCAATACATTTCTAGCTATTTAGCTAGCGTTA 1021 ||||| || | |||||| || || |||||||||||| |||| |||||| ||| Sbjct 1076 TTACTATACTTTTATGACTACGCTTATTATAATACATTTCTAACTATATAGCTA--GTTC 1133 Query 1022 TAGTT--TATTCATACCTCTTTAAGATAAATAATATTATGTAAAGAGTTATATATAAAAT 1079 || || |||| ||||||||||||| ||||||| Sbjct 1134 TATTTCCTATTTATACCTCTTTAAG--------------------------ATATAAATA 1167 Query 1080 ACCACAGCCACGGGAAATAATATAGAGCTATAGTTGATCTAGGATATAGTTTGGCGGCCA 1139 ||||||||||| ||||| ||||||||||||| |||||| ||| || | | | |||| Sbjct 1168 ACCACAGCCACAAGAAATCGTATAGAGCTATAGCAAATCTAGAATAGAGATGGTCCGCCA 1227 Query 1140 CGCACGCCACAACTCTCATTT 1160 | || ||||||| || |||| Sbjct 1228 CCCA-ACCACAACACTAATTT 1247 >seq1896 Length=105120 Score = 86.0 bits (94), Expect = 1e-13 Identities = 106/144 (74%), Gaps = 12/144 (8%) Strand=Plus/Plus Query 987 ATAGCAATACATTTCTAGCTATTTAGCTAGCGTTATAGTT-TATTCATACCTCTTTAAGA 1045 |||||||| ||| ||| | | ||||||| | |||| |||| || || ||| |||| Sbjct 45632 ATAGCAATTTATTATTAGGTCTCTAGCTAGTGCTATAACCCTATTTATTCCCCTTCAAGA 45691 Query 1046 TAAA----TAATATTATGTAAAGAGTTATATATAAAATACCACAGCCACGGGAAATAATA 1101 || | ||| ||||| |||| ||||||||||||||||||| ||||| ||| Sbjct 45692 TATAAGTATAAAATTATTTAAAC-------TATAAAATACCACAGCCACAAGAAATTATA 45744 Query 1102 TAGAGCTATAGTTGATCTAGGATA 1125 || ||||||||| |||||||||| Sbjct 45745 TAAAGCTATAGTAAATCTAGGATA 45768 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 9901205106675