Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Operophtera_20brumata_20[genbank_20GCA_5F001266575.1_202015-08-11]
25,801 sequences; 638,207,720 total letters
Query= NC_008911.1
Length=3130
Score E
Sequences producing significant alignments: (Bits) Value
seq9855 172 1e-39
seq6422 170 4e-39
seq2447 143 5e-31
seq16437 93.3 8e-16
seq1896 86.0 1e-13
>seq9855
Length=15086
Score = 172 bits (190), Expect = 1e-39
Identities = 197/253 (78%), Gaps = 10/253 (4%)
Strand=Plus/Plus
Query 902 TGGTGGCAGGCGTGGCAGCC-ATATCCAGTCTCACCATAGCTTATATTTATA-TATCATA 959
||||||| || ||||||||| | ||| || |||| ||||||| | ||| ||| ||
Sbjct 3025 TGGTGGCGGGTGTGGCAGCCCAGATCA--TCACACCTCAGCTTATGCT-ATACTAT-ATT 3080
Query 960 CTCTTACTGCCTCTAGTGACTATACTG-ATAGCAATACATTTCTAGCTATTTAGCTAGCG 1018
|| || | | || || |||| | |||||||||||||||||||| || |||| |
Sbjct 3081 TTCATATAACTTTTATTGGCTATGCCCTATAGCAATACATTTCTAGCTGTT-AGCTTACA 3139
Query 1019 TTATAGTTTATTCATACCTCTTTAAGATAAATAATATTATGTAAAGAGTTATATATAAAA 1078
|||| |||| |||||||||||||||| |||| ||||||||||||||| ||||||||
Sbjct 3140 CTATATGCTATTTATACCTCTTTAAGATATATAAACTTATGTAAAGAGTTACATATAAAA 3199
Query 1079 TACCACAGCCACGGGAAATAATATAGAGCTATAGTTGATCTAGGA-TATAGTTTGGCGGC 1137
|||||||||||||||||||||||||||||||| || ||||| | || | ||||| ||
Sbjct 3200 TACCACAGCCACGGGAAATAATATAGAGCTATGGTAAGTCTAGTACTAGA-ATTGGCAGC 3258
Query 1138 CACGCACGCCACA 1150
|||| ||||||
Sbjct 3259 CACGTTTGCCACA 3271
>seq6422
Length=30189
Score = 170 bits (188), Expect = 4e-39
Identities = 191/244 (78%), Gaps = 10/244 (4%)
Strand=Plus/Plus
Query 902 TGGTGGCAGGCGTGGCAGCC-ATATCCAGTCTCACCATAGCTTATATTTATA-TATCATA 959
||||||| || ||||||||| | ||| ||||||| ||||||| | ||| ||| ||
Sbjct 21009 TGGTGGCGGGTGTGGCAGCCCAGATCA--TCTCACCTCAGCTTATGCT-ATACTAT-ATT 21064
Query 960 CTCTTACTGCCTCTAGTGACTATACTG-ATAGCAATACATTTCTAGCTATTTAGCTAGCG 1018
|| || | | || || |||| | |||||||||||||||||||| || ||||
Sbjct 21065 TTCATATAACTTTTATTGGCTATGCCCTATAGCAATACATTTCTAGCTGTT-AGCTTATA 21123
Query 1019 TTATAGTTTATTCATACCTCTTTAAGATAAATAATATTATGTAAAGAGTTATATATAAAA 1078
|||| |||| |||||||||||||||| |||| ||||||||||||||| ||||||||
Sbjct 21124 CTATATGCTATTTATACCTCTTTAAGATATATAAACTTATGTAAAGAGTTACATATAAAA 21183
Query 1079 TACCACAGCCACGGGAAATAATATAGAGCTATAGTTGATCTAGGA-TATAGTTTGGCGGC 1137
|||||||||||||||||||||||||||||||| || ||||| | || | ||||| ||
Sbjct 21184 TACCACAGCCACGGGAAATAATATAGAGCTATGGTAAGTCTAGTACTAGA-ATTGGCAGC 21242
Query 1138 CACG 1141
||||
Sbjct 21243 CACG 21246
>seq2447
Length=64305
Score = 143 bits (158), Expect = 5e-31
Identities = 146/187 (78%), Gaps = 5/187 (3%)
Strand=Plus/Minus
Query 976 TGACTATACTGATAGCAATACATTTCTAGCTATTTAGCTAGCGTTATAGTT--TATTCAT 1033
|||||| || || |||||||||||| |||| ||||||| || || || |||| ||
Sbjct 3292 TGACTACGCTTATTATAATACATTTCTAACTATATAGCTAG--TTCTATTTCCTATTTAT 3235
Query 1034 ACCTCTTTAAGATAAATAATATTATGTAAAGAGTTATATATAAAATACCACAGCCACGGG 1093
|||||||||||||| |||| |||| ||||||||| ||||||| ||||||||||| |
Sbjct 3234 ACCTCTTTAAGATATATAAACTTATTTAAAGAGTTTGATATAAATAACCACAGCCACAAG 3175
Query 1094 AAATAATATAGAGCTATAGTTGATCTAGGATATAGTTTGGCGGCCACGCACGCCACAACT 1153
|||| ||||||||||||| |||||| ||| || | | | ||||| || |||||||
Sbjct 3174 AAATCGTATAGAGCTATAGCAAATCTAGAATAGAGATGGTCCGCCACCCA-ACCACAACA 3116
Query 1154 CTCATTT 1160
|| ||||
Sbjct 3115 CTAATTT 3109
>seq16437
Length=3918
Score = 93.3 bits (102), Expect = 8e-16
Identities = 179/261 (69%), Gaps = 36/261 (14%)
Strand=Plus/Plus
Query 904 GTGGCAGGCGTGGCAGCCATATCCAGTCTCACCATAGCTTATATTTATA-TATCATACTC 962
|| ||||| | ||| | |||||||||| ||| |||||||||| ||| ||| ||| |
Sbjct 1019 GTAGCAGGTG-GGCGGGTATATCCAGTCCAACCTCAGCTTATATT-ATACTATTATAAT- 1075
Query 963 TTACTGC-CTCTAGTGACTATACTGATAGCAATACATTTCTAGCTATTTAGCTAGCGTTA 1021
||||| || | |||||| || || |||||||||||| |||| |||||| |||
Sbjct 1076 TTACTATACTTTTATGACTACGCTTATTATAATACATTTCTAACTATATAGCTA--GTTC 1133
Query 1022 TAGTT--TATTCATACCTCTTTAAGATAAATAATATTATGTAAAGAGTTATATATAAAAT 1079
|| || |||| ||||||||||||| |||||||
Sbjct 1134 TATTTCCTATTTATACCTCTTTAAG--------------------------ATATAAATA 1167
Query 1080 ACCACAGCCACGGGAAATAATATAGAGCTATAGTTGATCTAGGATATAGTTTGGCGGCCA 1139
||||||||||| ||||| ||||||||||||| |||||| ||| || | | | ||||
Sbjct 1168 ACCACAGCCACAAGAAATCGTATAGAGCTATAGCAAATCTAGAATAGAGATGGTCCGCCA 1227
Query 1140 CGCACGCCACAACTCTCATTT 1160
| || ||||||| || ||||
Sbjct 1228 CCCA-ACCACAACACTAATTT 1247
>seq1896
Length=105120
Score = 86.0 bits (94), Expect = 1e-13
Identities = 106/144 (74%), Gaps = 12/144 (8%)
Strand=Plus/Plus
Query 987 ATAGCAATACATTTCTAGCTATTTAGCTAGCGTTATAGTT-TATTCATACCTCTTTAAGA 1045
|||||||| ||| ||| | | ||||||| | |||| |||| || || ||| ||||
Sbjct 45632 ATAGCAATTTATTATTAGGTCTCTAGCTAGTGCTATAACCCTATTTATTCCCCTTCAAGA 45691
Query 1046 TAAA----TAATATTATGTAAAGAGTTATATATAAAATACCACAGCCACGGGAAATAATA 1101
|| | ||| ||||| |||| ||||||||||||||||||| ||||| |||
Sbjct 45692 TATAAGTATAAAATTATTTAAAC-------TATAAAATACCACAGCCACAAGAAATTATA 45744
Query 1102 TAGAGCTATAGTTGATCTAGGATA 1125
|| ||||||||| ||||||||||
Sbjct 45745 TAAAGCTATAGTAAATCTAGGATA 45768
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 9901205106675
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |