Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Operophtera_20brumata_20[genbank_20GCA_5F001266575.1_202015-08-11] 25,801 sequences; 638,207,720 total letters Query= NC_008912.1 Length=3141 Score E Sequences producing significant alignments: (Bits) Value seq9855 109 1e-20 seq6422 109 1e-20 >seq9855 Length=15086 Score = 109 bits (120), Expect = 1e-20 Identities = 201/287 (70%), Gaps = 7/287 (2%) Strand=Plus/Minus Query 316 AGCTATATAGCTAAAAATATATCGCTATAGAGCATAACCACTATAAGCTGTATGAAAATA 375 ||||| | ||||| |||| ||| ||||||| ||||| ||| || ||| | |||||||||| Sbjct 3135 AGCTA-ACAGCTAGAAATGTATTGCTATAGGGCATAGCCAATAAAAGTTATATGAAAATA 3077 Query 376 TAGTATAAATATAAGCTAAGGCGGGATAAGCTTGACCCACCACACCCGCCAC--ACTGAC 433 |||||| | ||||||| ||| | ||| | | || | ||||||||||||| | | | Sbjct 3076 TAGTAT-AGCATAAGCTGAGGTGTGATGATC-TGGGCTGCCACACCCGCCACCAATTTCC 3019 Query 434 GCTCAAGCACATCACGCGGACATTTTGAATCGCATATGTGCTCGTTGGATTCGTTTCGAC 493 || | || || | | |||||| ||| ||| | |||||||||||| | ||| Sbjct 3018 AATCGGGGACTTCCAGTAGCCATTTTTGGTCGACCATGGACCCGTTGGATTCGTCTTGAC 2959 Query 494 GAGAGGAAACCAACGAGCCCTATTTCATGGCTGTGATTCTCGAA-GGTGACTTTTTACAA 552 | |||||| || | ||||| || | | |||| || ||| ||| ||||| ||||| Sbjct 2958 GCGAGGAATCCGATGAGCCTAATCACGGGAGGGTGA-CCTTGAAGGGTAACTTTCTACAA 2900 Query 553 GCCCTTATGTACTTCAAATGGGTGGCGAGTACtttttttCGAAAAAT 599 | | | || | | ||| || || ||| |||||||| |||||| Sbjct 2899 CCACGAAAATAATCAACATGAGTAGCAGGTAATTTTTTTCAAAAAAT 2853 >seq6422 Length=30189 Score = 109 bits (120), Expect = 1e-20 Identities = 201/287 (70%), Gaps = 7/287 (2%) Strand=Plus/Minus Query 316 AGCTATATAGCTAAAAATATATCGCTATAGAGCATAACCACTATAAGCTGTATGAAAATA 375 ||||| | ||||| |||| ||| ||||||| ||||| ||| || ||| | |||||||||| Sbjct 21119 AGCTA-ACAGCTAGAAATGTATTGCTATAGGGCATAGCCAATAAAAGTTATATGAAAATA 21061 Query 376 TAGTATAAATATAAGCTAAGGCGGGATAAGCTTGACCCACCACACCCGCCAC--ACTGAC 433 |||||| | ||||||| ||| | ||| | | || | ||||||||||||| | | | Sbjct 21060 TAGTAT-AGCATAAGCTGAGGTGAGATGATC-TGGGCTGCCACACCCGCCACCAATTTCC 21003 Query 434 GCTCAAGCACATCACGCGGACATTTTGAATCGCATATGTGCTCGTTGGATTCGTTTCGAC 493 || | || || | | |||||| ||| ||| | |||||||||||| | ||| Sbjct 21002 AATCGGGGACTTCCAGTAGCCATTTTTGGTCGACCATGGACCCGTTGGATTCGTCTTGAC 20943 Query 494 GAGAGGAAACCAACGAGCCCTATTTCATGGCTGTGATTCTCGAA-GGTGACTTTTTACAA 552 | |||||| || | ||||| || | | |||| || ||| ||| ||||| ||||| Sbjct 20942 GCGAGGAATCCGATGAGCCTAATCACGGGAGGGTGA-CCTTGAAGGGTAACTTTCTACAA 20884 Query 553 GCCCTTATGTACTTCAAATGGGTGGCGAGTACtttttttCGAAAAAT 599 | | | || | | ||| || || ||| |||||||| |||||| Sbjct 20883 CCACGAAAATAATCAACATGAGTAGCAGGTAATTTTTTTCAAAAAAT 20837 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 9936395173290