Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Operophtera_20brumata_20[genbank_20GCA_5F001266575.1_202015-08-11] 25,801 sequences; 638,207,720 total letters Query= NC_008914.1 Length=3243 Score E Sequences producing significant alignments: (Bits) Value seq2447 131 3e-27 seq6422 118 2e-23 seq9855 116 8e-23 >seq2447 Length=64305 Score = 131 bits (144), Expect = 3e-27 Identities = 130/163 (80%), Gaps = 4/163 (2%) Strand=Plus/Minus Query 1721 TATGCTCATTATAATATATTCCTGCTTATTTAGCTAGTCTTATTTGCTACTTATACCTCT 1780 || ||| ||||||||| ||| || ||| |||||||| ||||| ||| |||||||||| Sbjct 3288 TACGCTTATTATAATACATTTCTAACTATATAGCTAGTTCTATTTCCTATTTATACCTCT 3229 Query 1781 TTAAGATATATAACATTATTTAAAGAGTTATATATAAAATACCACAGCCACGAAAGAATA 1840 ||||||||||||| |||||||||||||| ||||||| ||||||||||| || ||| Sbjct 3228 TTAAGATATATAAACTTATTTAAAGAGTTTGATATAAATAACCACAGCCAC-AAGAAATC 3170 Query 1841 CTATAAGATCTATAGTTAATTTAGGATTAGA-ATGGCTCGCCA 1882 ||| ||| |||||| ||| || || |||| |||| ||||| Sbjct 3169 GTAT-AGAGCTATAGCAAATCTA-GAATAGAGATGGTCCGCCA 3129 >seq6422 Length=30189 Score = 118 bits (130), Expect = 2e-23 Identities = 102/124 (82%), Gaps = 2/124 (2%) Strand=Plus/Plus Query 1750 TTAGCTAGTCTTATTTGCTACTTATACCTCTTTAAGATATATAACATTATTTAAAGAGTT 1809 |||||| | ||| ||||| ||||||||||||||||||||||| |||| ||||||||| Sbjct 21114 TTAGCTTATACTATATGCTATTTATACCTCTTTAAGATATATAAACTTATGTAAAGAGTT 21173 Query 1810 ATATATAAAATACCACAGCCACGAAAGAATACTATAAGATCTATAGTTAATTTAGGATTA 1869 | ||||||||||||||||||||| | |||| ||| ||| |||| || | | ||| | || Sbjct 21174 ACATATAAAATACCACAGCCACGGGA-AATAATAT-AGAGCTATGGTAAGTCTAGTACTA 21231 Query 1870 GAAT 1873 |||| Sbjct 21232 GAAT 21235 >seq9855 Length=15086 Score = 116 bits (128), Expect = 8e-23 Identities = 95/113 (84%), Gaps = 2/113 (2%) Strand=Plus/Plus Query 1761 TATTTGCTACTTATACCTCTTTAAGATATATAACATTATTTAAAGAGTTATATATAAAAT 1820 ||| ||||| ||||||||||||||||||||||| |||| |||||||||| ||||||||| Sbjct 3141 TATATGCTATTTATACCTCTTTAAGATATATAAACTTATGTAAAGAGTTACATATAAAAT 3200 Query 1821 ACCACAGCCACGAAAGAATACTATAAGATCTATAGTTAATTTAGGATTAGAAT 1873 |||||||||||| | |||| ||| ||| |||| || | | ||| | |||||| Sbjct 3201 ACCACAGCCACGGGA-AATAATAT-AGAGCTATGGTAAGTCTAGTACTAGAAT 3251 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 10262703063720