Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Operophtera_20brumata_20[genbank_20GCA_5F001266575.1_202015-08-11] 25,801 sequences; 638,207,720 total letters Query= NC_008916.1 Length=3331 Score E Sequences producing significant alignments: (Bits) Value seq9855 122 2e-24 seq6422 122 2e-24 seq2447 113 1e-21 >seq9855 Length=15086 Score = 122 bits (134), Expect = 2e-24 Identities = 84/95 (88%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 2178 TATATATACCTCTTTAAGATATATAACTTTATTTAAAGAGTTACTTATAAAATACCACAG 2237 ||| |||||||||||||||||||||| |||| ||||||||||| ||||||||||||||| Sbjct 3148 TATTTATACCTCTTTAAGATATATAAACTTATGTAAAGAGTTACATATAAAATACCACAG 3207 Query 2238 CCACGCGAAATAATATAGGCCTATAGAAAATCTAG 2272 ||||| |||||||||||| |||| | || ||||| Sbjct 3208 CCACGGGAAATAATATAGAGCTATGGTAAGTCTAG 3242 >seq6422 Length=30189 Score = 122 bits (134), Expect = 2e-24 Identities = 84/95 (88%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 2178 TATATATACCTCTTTAAGATATATAACTTTATTTAAAGAGTTACTTATAAAATACCACAG 2237 ||| |||||||||||||||||||||| |||| ||||||||||| ||||||||||||||| Sbjct 21132 TATTTATACCTCTTTAAGATATATAAACTTATGTAAAGAGTTACATATAAAATACCACAG 21191 Query 2238 CCACGCGAAATAATATAGGCCTATAGAAAATCTAG 2272 ||||| |||||||||||| |||| | || ||||| Sbjct 21192 CCACGGGAAATAATATAGAGCTATGGTAAGTCTAG 21226 >seq2447 Length=64305 Score = 113 bits (124), Expect = 1e-21 Identities = 102/127 (80%), Gaps = 1/127 (1%) Strand=Plus/Minus Query 2175 TCTTATATATACCTCTTTAAGATATATAACTTTATTTAAAGAGTTACTTATAAAATACCA 2234 || ||| |||||||||||||||||||||| |||||||||||||| |||||| |||| Sbjct 3244 TCCTATTTATACCTCTTTAAGATATATAAACTTATTTAAAGAGTTTGATATAAATAACCA 3185 Query 2235 CAGCCACGCGAAATAATATAGGCCTATAGAAAATCTAGAATTGAAAAGTTTAGCCATACC 2294 ||||||| ||||| ||||| |||||| ||||||||||| || | | | |||| || Sbjct 3184 CAGCCACAAGAAATCGTATAGAGCTATAGCAAATCTAGAATAGAGATGGTCCGCCA-CCC 3126 Query 2295 AGCCACA 2301 | ||||| Sbjct 3125 AACCACA 3119 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 10544223596640