Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Operophtera_20brumata_20[genbank_20GCA_5F001266575.1_202015-08-11] 25,801 sequences; 638,207,720 total letters Query= NC_008922.1 Length=3519 Score E Sequences producing significant alignments: (Bits) Value seq6422 149 1e-32 seq9855 145 2e-31 seq2447 141 2e-30 seq16437 109 1e-20 seq7981 102 2e-18 seq1896 98.7 2e-17 seq6263 95.1 3e-16 >seq6422 Length=30189 Score = 149 bits (164), Expect = 1e-32 Identities = 152/193 (79%), Gaps = 4/193 (2%) Strand=Plus/Minus Query 3322 CTAGAATTCCTATAGCTTTA-ATTATTTCCTGTGGCTGTGGTACTTTATTATTAACTCTT 3380 ||||| || | |||||| || ||||||||| |||||||||||| ||||| |||||||| Sbjct 21226 CTAGACTTACCATAGCTCTATATTATTTCCCGTGGCTGTGGTATTTTATATGTAACTCTT 21167 Query 3381 TTAATAGTTATAAATATCTTAAAGAGGTAAAAATAGTAAATAGCACTAGCTATATACCTA 3440 | ||| | || |||||||||||||||| |||||| | |||| | ||||| | | ||| Sbjct 21166 TACATAAGTTTATATATCTTAAAGAGGTATAAATAGCATATAGTATAAGCTA-ACAGCTA 21108 Query 3441 GAAATATATTGCTATA-AGTATAGACACTAAAAGCTATAGGAATATAAAGTATAAATATA 3499 ||||| |||||||||| | |||| || |||||| |||| ||| ||| ||||| | ||| Sbjct 21107 GAAATGTATTGCTATAGGGCATAGCCAATAAAAGTTATATGAAAATATAGTAT-AGCATA 21049 Query 3500 AGCTGCGATGGGA 3512 ||||| | || || Sbjct 21048 AGCTGAGGTGAGA 21036 >seq9855 Length=15086 Score = 145 bits (160), Expect = 2e-31 Identities = 151/193 (78%), Gaps = 4/193 (2%) Strand=Plus/Minus Query 3322 CTAGAATTCCTATAGCTTTA-ATTATTTCCTGTGGCTGTGGTACTTTATTATTAACTCTT 3380 ||||| || | |||||| || ||||||||| |||||||||||| ||||| |||||||| Sbjct 3242 CTAGACTTACCATAGCTCTATATTATTTCCCGTGGCTGTGGTATTTTATATGTAACTCTT 3183 Query 3381 TTAATAGTTATAAATATCTTAAAGAGGTAAAAATAGTAAATAGCACTAGCTATATACCTA 3440 | ||| | || |||||||||||||||| |||||| | |||| ||||| | | ||| Sbjct 3182 TACATAAGTTTATATATCTTAAAGAGGTATAAATAGCATATAGTGTAAGCTA-ACAGCTA 3124 Query 3441 GAAATATATTGCTATA-AGTATAGACACTAAAAGCTATAGGAATATAAAGTATAAATATA 3499 ||||| |||||||||| | |||| || |||||| |||| ||| ||| ||||| | ||| Sbjct 3123 GAAATGTATTGCTATAGGGCATAGCCAATAAAAGTTATATGAAAATATAGTAT-AGCATA 3065 Query 3500 AGCTGCGATGGGA 3512 ||||| | || || Sbjct 3064 AGCTGAGGTGTGA 3052 >seq2447 Length=64305 Score = 141 bits (156), Expect = 2e-30 Identities = 143/180 (79%), Gaps = 6/180 (3%) Strand=Plus/Plus Query 3319 ATTCTAGAATTCCTATAGCTTTA-ATTATTTCCTGTGGCTGTGGTACTTTATTATTAACT 3377 |||||||| || |||||||| || | ||||| |||||||||||| ||||| |||| Sbjct 3144 ATTCTAGATTTGCTATAGCTCTATACGATTTCTTGTGGCTGTGGTTATTTATATCAAACT 3203 Query 3378 CTTTTAATAGTTATAAATATCTTAAAGAGGTAAAAATAGTAAATAGCACTAGCTATATAC 3437 |||| |||| | || |||||||||||||||| |||||| |||||| |||||||||||| Sbjct 3204 CTTTAAATAAGTTTATATATCTTAAAGAGGTATAAATAGGAAATAGAACTAGCTATATAG 3263 Query 3438 CTAGAAATATATTGCTATAAGTATAGACACTAAAAGCTATAGGAA--TATAA-AGTATAA 3494 ||||||| |||| ||||| ||| || || ||| ||||| || ||||| ||||||| Sbjct 3264 TTAGAAATGTATTATAATAAGCGTAGTCA-TATAAG-TATAGTAAATTATAATAGTATAA 3321 >seq16437 Length=3918 Score = 109 bits (120), Expect = 1e-20 Identities = 106/130 (82%), Gaps = 6/130 (5%) Strand=Plus/Minus Query 3387 GTTATAAATATCTTAAAGAGGTAAAAATAGTAAATAGCACTAGCTATATACCTAGAAATA 3446 ||||| |||||||||||||||| |||||| |||||| |||||||||||| ||||||| Sbjct 1169 GTTATTTATATCTTAAAGAGGTATAAATAGGAAATAGAACTAGCTATATAGTTAGAAATG 1110 Query 3447 TATTGCTATAAGTATAGACACTAAAAGCTATAGGAA--TATAA-AGTATAAATATAAGCT 3503 |||| ||||| ||| || |||||| ||||| || ||||| ||||| |||||||||| Sbjct 1109 TATTATAATAAGCGTAGTCA-TAAAAG-TATAGTAAATTATAATAGTAT-AATATAAGCT 1053 Query 3504 GCGATGGGAC 3513 | | | |||| Sbjct 1052 GAGGTTGGAC 1043 >seq7981 Length=21338 Score = 102 bits (112), Expect = 2e-18 Identities = 113/148 (76%), Gaps = 12/148 (8%) Strand=Plus/Minus Query 3373 TAACTCTTTTAATA-----GTTATAAATATCTTAAAGAGGTAAAAATAGTAAATAGCACT 3427 |||||||||||||| ||| |||||||| ||||||| || |||||| | || | | | Sbjct 10340 TAACTCTTTTAATACCCAAGTT-TAAATATCCTAAAGAGATAGAAATAGGATATGGTATT 10282 Query 3428 AGCTATA----TACCTAGAAATATATTGCTATAAGTATAGACACTAAAAGCTATAGGAAT 3483 ||||||| | ||||||| ||| ||| | |||||| | |||||||||||||||| Sbjct 10281 AGCTATAGGTGTGGCTAGAAAGGTATAACTAAAGGTATAGCCGTTAAAAGCTATAGGAAT 10222 Query 3484 ATA--AAGTATAAATATAAGCTGCGATG 3509 ||| |||||||||||| ||| |||| Sbjct 10221 ATATGGTGTATAAATATAAACTGTGATG 10194 >seq1896 Length=105120 Score = 98.7 bits (108), Expect = 2e-17 Identities = 109/141 (77%), Gaps = 7/141 (5%) Strand=Plus/Minus Query 3319 ATTCTAGAATTCCTATAGCTTTA-ATTATTTCCTGTGGCTGTGGTACTTTATTATT-AAC 3376 || ||||| || ||||||||||| || ||||| ||||||||||||| ||||| || || Sbjct 45767 ATCCTAGATTTACTATAGCTTTATATAATTTCTTGTGGCTGTGGTATTTTATAGTTTAAA 45708 Query 3377 TCTTTTAATAGTTATAAATATCTTAAAGAGGTAAAAATAGTAA-ATAGCACTAGCTATAT 3435 | ||| ||| ||||| |||| ||| || | |||||| ||||||||||||| | Sbjct 45707 TAATTTTATACTTATA----TCTTGAAGGGGAATAAATAGGGTTATAGCACTAGCTAGAG 45652 Query 3436 ACCTAGAAATATATTGCTATA 3456 ||||| |||| ||||||||| Sbjct 45651 ACCTAATAATAAATTGCTATA 45631 >seq6263 Length=31128 Score = 95.1 bits (104), Expect = 3e-16 Identities = 95/122 (78%), Gaps = 6/122 (5%) Strand=Plus/Plus Query 3398 CTTAAAGAGGTAAAAATAGTAAATAGCACTAGCTATATACCTAGAAATATATTGCTATAA 3457 ||||||||| || |||||| | || | | ||||||||| ||||||| ||| |||| | Sbjct 12660 CTTAAAGAGATATAAATAGGATATGGTATTAGCTATATGGCTAGAAAGGTATAGCTAAAG 12719 Query 3458 GTATAGACAC----TAAAAGCTATAGGAATATAAAG--TATAAATATAAGCTGCGATGGG 3511 |||||| | ||||||||||| ||||||| || ||||||||||||||| |||| | Sbjct 12720 GTATAGGTAGCCGTTAAAAGCTATACGAATATATAGTATATAAATATAAGCTGTGATGAG 12779 Query 3512 AC 3513 || Sbjct 12780 AC 12781 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 11145653826060