Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Operophtera_20brumata_20[genbank_20GCA_5F001266575.1_202015-08-11]
25,801 sequences; 638,207,720 total letters
Query= NC_008929.1
Length=4707
Score E
Sequences producing significant alignments: (Bits) Value
seq9855 176 1e-40
seq6422 167 7e-38
seq2447 158 4e-35
seq1896 104 7e-19
seq1668 84.2 7e-13
seq171 80.6 8e-12
>seq9855
Length=15086
Score = 176 bits (194), Expect = 1e-40
Identities = 303/425 (71%), Gaps = 24/425 (6%)
Strand=Plus/Minus
Query 2883 ATGTGGCGGAGGTGGCCGACCATTTCTA-TCCTAGATTTACTATAAATTTATAATATTTC 2941
||||||| | ||||| | ||| ||||| | ||||| |||| ||| | |||| ||||||
Sbjct 3272 ATGTGGCAAACGTGGCTG-CCAATTCTAGTACTAGACTTACCATAGCTCTATATTATTTC 3214
Query 2942 TCGTGGCTGTGGtattttatatataactctttaaataatattatatttcttaaagaggta 3001
||||||||||||||||||||| |||||||||| |||| |||||| |||||||||||||
Sbjct 3213 CCGTGGCTGTGGTATTTTATATGTAACTCTTTACATAAGTTTATATATCTTAAAGAGGTA 3154
Query 3002 taaatagaatataaCGTTAGCTATATAGCTAGAAGTATATTACT-GAAGATATAAACACT 3060
||||||| ||||| || ||||| | |||||||| | |||| || | | ||| || |
Sbjct 3153 TAAATAGCATATAGTGTAAGCTA-ACAGCTAGAAATGTATTGCTATAGGGCATAGCCAAT 3095
Query 3061 AAATAATATAAGAGTATATTCATTATATTTATAAGCTGAGGTAGCATAGGAATTACCCGC 3120
||| |||| || |||| | |||| |||||||||||| || | | | ||
Sbjct 3094 AAAAGTTATATGAAAATAT--AGTATA-GCATAAGCTGAGGTGTGAT-GATCTGGGCTGC 3039
Query 3121 CACACCCGCCAC--ATCGCCATTGGGACACTTCTCTT--CAATATTT----GACAATGAG 3172
|||||||||||| || ||| | || ||||| | | || ||| ||| |||
Sbjct 3038 CACACCCGCCACCAATTTCCAATCGGGGACTTCCAGTAGCCATTTTTGGTCGACCATG-- 2981
Query 3173 TAAGAGCTCGTTGGATTCGTCTTAAAGAGACAAACCCAACGAGCCCTATGCCGAGAATGC 3232
|| | ||||||||||||||| | | || || || | ||||| || || || |
Sbjct 2980 ---GA-CCCGTTGGATTCGTCTTGACGCGAGGAATCCGATGAGCCTAATCACGGGAGGGT 2925
Query 3233 AACCTTAAAGGGCAGATTTCTACAATTCAC-AATATACCCGAAATATGTGGCAAGTTCtt 3291
||||| ||||| | ||||||||| ||| || ||| | | || || ||| || ||
Sbjct 2924 GACCTTGAAGGGTAACTTTCTACAA-CCACGAAAATAATCAACATGAGTAGCAGGTAATT 2866
Query 3292 ttttt 3296
|||||
Sbjct 2865 TTTTT 2861
>seq6422
Length=30189
Score = 167 bits (184), Expect = 7e-38
Identities = 301/425 (71%), Gaps = 24/425 (6%)
Strand=Plus/Minus
Query 2883 ATGTGGCGGAGGTGGCCGACCATTTCTA-TCCTAGATTTACTATAAATTTATAATATTTC 2941
|||||| | ||||| | ||| ||||| | ||||| |||| ||| | |||| ||||||
Sbjct 21256 ATGTGGTAAACGTGGCTG-CCAATTCTAGTACTAGACTTACCATAGCTCTATATTATTTC 21198
Query 2942 TCGTGGCTGTGGtattttatatataactctttaaataatattatatttcttaaagaggta 3001
||||||||||||||||||||| |||||||||| |||| |||||| |||||||||||||
Sbjct 21197 CCGTGGCTGTGGTATTTTATATGTAACTCTTTACATAAGTTTATATATCTTAAAGAGGTA 21138
Query 3002 taaatagaatataaCGTTAGCTATATAGCTAGAAGTATATTACT-GAAGATATAAACACT 3060
||||||| ||||| | ||||| | |||||||| | |||| || | | ||| || |
Sbjct 21137 TAAATAGCATATAGTATAAGCTA-ACAGCTAGAAATGTATTGCTATAGGGCATAGCCAAT 21079
Query 3061 AAATAATATAAGAGTATATTCATTATATTTATAAGCTGAGGTAGCATAGGAATTACCCGC 3120
||| |||| || |||| | |||| |||||||||||| || | | | ||
Sbjct 21078 AAAAGTTATATGAAAATAT--AGTATA-GCATAAGCTGAGGTGAGAT-GATCTGGGCTGC 21023
Query 3121 CACACCCGCCAC--ATCGCCATTGGGACACTTCTCTT--CAATATTT----GACAATGAG 3172
|||||||||||| || ||| | || ||||| | | || ||| ||| |||
Sbjct 21022 CACACCCGCCACCAATTTCCAATCGGGGACTTCCAGTAGCCATTTTTGGTCGACCATG-- 20965
Query 3173 TAAGAGCTCGTTGGATTCGTCTTAAAGAGACAAACCCAACGAGCCCTATGCCGAGAATGC 3232
|| | ||||||||||||||| | | || || || | ||||| || || || |
Sbjct 20964 ---GA-CCCGTTGGATTCGTCTTGACGCGAGGAATCCGATGAGCCTAATCACGGGAGGGT 20909
Query 3233 AACCTTAAAGGGCAGATTTCTACAATTCAC-AATATACCCGAAATATGTGGCAAGTTCtt 3291
||||| ||||| | ||||||||| ||| || ||| | | || || ||| || ||
Sbjct 20908 GACCTTGAAGGGTAACTTTCTACAA-CCACGAAAATAATCAACATGAGTAGCAGGTAATT 20850
Query 3292 ttttt 3296
|||||
Sbjct 20849 TTTTT 20845
>seq2447
Length=64305
Score = 158 bits (174), Expect = 4e-35
Identities = 128/153 (84%), Gaps = 4/153 (3%)
Strand=Plus/Plus
Query 2893 GGTGGCCGACCATTTCTATCCTAGATTTACTATAAATTTATAATATTTCTCGTGGCTGTG 2952
|||||| |||||| ||||| |||||||| ||||| | |||| |||||| |||||||||
Sbjct 3127 GGTGGCGGACCATCTCTATTCTAGATTTGCTATAGCTCTATACGATTTCTTGTGGCTGTG 3186
Query 2953 Gtattttatatataactctttaaataatattatatttcttaaagaggtataaatag--aa 3010
|| ||||||| |||||||||||||| |||||| |||||||||||||||||||| ||
Sbjct 3187 GTTATTTATATCAAACTCTTTAAATAAGTTTATATATCTTAAAGAGGTATAAATAGGAAA 3246
Query 3011 tataaCGTTAGCTATATAGCTAGAAGTATATTA 3043
|| ||| ||||||||||| ||||| | |||||
Sbjct 3247 TAGAAC--TAGCTATATAGTTAGAAATGTATTA 3277
>seq1896
Length=105120
Score = 104 bits (114), Expect = 7e-19
Identities = 114/151 (75%), Gaps = 12/151 (8%)
Strand=Plus/Minus
Query 2900 GACCATTTCTATCCTAGATTTACTATAAATTTATAATATTTCTCGTGGCTGTGGtatttt 2959
|| |||||||||||||||||||||||| |||||| |||||| ||||||||||||||||
Sbjct 45777 GATCATTTCTATCCTAGATTTACTATAGCTTTATATAATTTCTTGTGGCTGTGGTATTTT 45718
Query 2960 atatataactctttaaataatatta----tatttcttaaagaggtataaata-gaatata 3014
||| |||||||||| ||| ||| |||| ||| || ||||||| | ||||
Sbjct 45717 ATA-------GTTTAAATAATTTTATACTTATATCTTGAAGGGGAATAAATAGGGTTATA 45665
Query 3015 aCGTTAGCTATATAGCTAGAAGTATATTACT 3045
| |||||| | | ||| | || ||| ||
Sbjct 45664 GCACTAGCTAGAGACCTAATAATAAATTGCT 45634
>seq1668
Length=82418
Score = 84.2 bits (92), Expect = 7e-13
Identities = 79/101 (78%), Gaps = 11/101 (11%)
Strand=Plus/Plus
Query 2905 TTTCTATCCTAGATTTACTATAAATTTATAATATTTCTCGTGGCTGTGGtattttatata 2964
|||||||||||||||||||||| |||||| |||||| |||| ||||||||||||||
Sbjct 67357 TTTCTATCCTAGATTTACTATAGCTTTATATGATTTCTTGTGGGTGTGGTATTTTATA-- 67414
Query 2965 taactctttaaataatatta----tatttcttaaagaggta 3001
||| |||||| ||| ||| |||| ||||||||
Sbjct 67415 -----GTTTTAATAATTTTATACTTATATCTTGAAGAGGTA 67450
>seq171
Length=184467
Score = 80.6 bits (88), Expect = 8e-12
Identities = 85/108 (79%), Gaps = 8/108 (7%)
Strand=Plus/Plus
Query 2905 TTTCTATCCTAGATTTACTATAAATTTATAAT---ATTTCTCGTGGCTGTGGtattttat 2961
||||||||||||||||| |||| || ||||| |||||| ||||||||||||||||||
Sbjct 158781 TTTCTATCCTAGATTTAATATAGCTTCATAATATGATTTCTTGTGGCTGTGGTATTTTAT 158840
Query 2962 atataactctttaaat-aatattatatttcttaaagaggtataaatag 3008
| | | | ||| | ||| | ||| || | |||||||||||||||
Sbjct 158841 AGTT---TTTATAATTGTATACT-TATATCCTGAAGAGGTATAAATAG 158884
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 14946181020480
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |