Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Operophtera_20brumata_20[genbank_20GCA_5F001266575.1_202015-08-11] 25,801 sequences; 638,207,720 total letters Query= NC_008929.1 Length=4707 Score E Sequences producing significant alignments: (Bits) Value seq9855 176 1e-40 seq6422 167 7e-38 seq2447 158 4e-35 seq1896 104 7e-19 seq1668 84.2 7e-13 seq171 80.6 8e-12 >seq9855 Length=15086 Score = 176 bits (194), Expect = 1e-40 Identities = 303/425 (71%), Gaps = 24/425 (6%) Strand=Plus/Minus Query 2883 ATGTGGCGGAGGTGGCCGACCATTTCTA-TCCTAGATTTACTATAAATTTATAATATTTC 2941 ||||||| | ||||| | ||| ||||| | ||||| |||| ||| | |||| |||||| Sbjct 3272 ATGTGGCAAACGTGGCTG-CCAATTCTAGTACTAGACTTACCATAGCTCTATATTATTTC 3214 Query 2942 TCGTGGCTGTGGtattttatatataactctttaaataatattatatttcttaaagaggta 3001 ||||||||||||||||||||| |||||||||| |||| |||||| ||||||||||||| Sbjct 3213 CCGTGGCTGTGGTATTTTATATGTAACTCTTTACATAAGTTTATATATCTTAAAGAGGTA 3154 Query 3002 taaatagaatataaCGTTAGCTATATAGCTAGAAGTATATTACT-GAAGATATAAACACT 3060 ||||||| ||||| || ||||| | |||||||| | |||| || | | ||| || | Sbjct 3153 TAAATAGCATATAGTGTAAGCTA-ACAGCTAGAAATGTATTGCTATAGGGCATAGCCAAT 3095 Query 3061 AAATAATATAAGAGTATATTCATTATATTTATAAGCTGAGGTAGCATAGGAATTACCCGC 3120 ||| |||| || |||| | |||| |||||||||||| || | | | || Sbjct 3094 AAAAGTTATATGAAAATAT--AGTATA-GCATAAGCTGAGGTGTGAT-GATCTGGGCTGC 3039 Query 3121 CACACCCGCCAC--ATCGCCATTGGGACACTTCTCTT--CAATATTT----GACAATGAG 3172 |||||||||||| || ||| | || ||||| | | || ||| ||| ||| Sbjct 3038 CACACCCGCCACCAATTTCCAATCGGGGACTTCCAGTAGCCATTTTTGGTCGACCATG-- 2981 Query 3173 TAAGAGCTCGTTGGATTCGTCTTAAAGAGACAAACCCAACGAGCCCTATGCCGAGAATGC 3232 || | ||||||||||||||| | | || || || | ||||| || || || | Sbjct 2980 ---GA-CCCGTTGGATTCGTCTTGACGCGAGGAATCCGATGAGCCTAATCACGGGAGGGT 2925 Query 3233 AACCTTAAAGGGCAGATTTCTACAATTCAC-AATATACCCGAAATATGTGGCAAGTTCtt 3291 ||||| ||||| | ||||||||| ||| || ||| | | || || ||| || || Sbjct 2924 GACCTTGAAGGGTAACTTTCTACAA-CCACGAAAATAATCAACATGAGTAGCAGGTAATT 2866 Query 3292 ttttt 3296 ||||| Sbjct 2865 TTTTT 2861 >seq6422 Length=30189 Score = 167 bits (184), Expect = 7e-38 Identities = 301/425 (71%), Gaps = 24/425 (6%) Strand=Plus/Minus Query 2883 ATGTGGCGGAGGTGGCCGACCATTTCTA-TCCTAGATTTACTATAAATTTATAATATTTC 2941 |||||| | ||||| | ||| ||||| | ||||| |||| ||| | |||| |||||| Sbjct 21256 ATGTGGTAAACGTGGCTG-CCAATTCTAGTACTAGACTTACCATAGCTCTATATTATTTC 21198 Query 2942 TCGTGGCTGTGGtattttatatataactctttaaataatattatatttcttaaagaggta 3001 ||||||||||||||||||||| |||||||||| |||| |||||| ||||||||||||| Sbjct 21197 CCGTGGCTGTGGTATTTTATATGTAACTCTTTACATAAGTTTATATATCTTAAAGAGGTA 21138 Query 3002 taaatagaatataaCGTTAGCTATATAGCTAGAAGTATATTACT-GAAGATATAAACACT 3060 ||||||| ||||| | ||||| | |||||||| | |||| || | | ||| || | Sbjct 21137 TAAATAGCATATAGTATAAGCTA-ACAGCTAGAAATGTATTGCTATAGGGCATAGCCAAT 21079 Query 3061 AAATAATATAAGAGTATATTCATTATATTTATAAGCTGAGGTAGCATAGGAATTACCCGC 3120 ||| |||| || |||| | |||| |||||||||||| || | | | || Sbjct 21078 AAAAGTTATATGAAAATAT--AGTATA-GCATAAGCTGAGGTGAGAT-GATCTGGGCTGC 21023 Query 3121 CACACCCGCCAC--ATCGCCATTGGGACACTTCTCTT--CAATATTT----GACAATGAG 3172 |||||||||||| || ||| | || ||||| | | || ||| ||| ||| Sbjct 21022 CACACCCGCCACCAATTTCCAATCGGGGACTTCCAGTAGCCATTTTTGGTCGACCATG-- 20965 Query 3173 TAAGAGCTCGTTGGATTCGTCTTAAAGAGACAAACCCAACGAGCCCTATGCCGAGAATGC 3232 || | ||||||||||||||| | | || || || | ||||| || || || | Sbjct 20964 ---GA-CCCGTTGGATTCGTCTTGACGCGAGGAATCCGATGAGCCTAATCACGGGAGGGT 20909 Query 3233 AACCTTAAAGGGCAGATTTCTACAATTCAC-AATATACCCGAAATATGTGGCAAGTTCtt 3291 ||||| ||||| | ||||||||| ||| || ||| | | || || ||| || || Sbjct 20908 GACCTTGAAGGGTAACTTTCTACAA-CCACGAAAATAATCAACATGAGTAGCAGGTAATT 20850 Query 3292 ttttt 3296 ||||| Sbjct 20849 TTTTT 20845 >seq2447 Length=64305 Score = 158 bits (174), Expect = 4e-35 Identities = 128/153 (84%), Gaps = 4/153 (3%) Strand=Plus/Plus Query 2893 GGTGGCCGACCATTTCTATCCTAGATTTACTATAAATTTATAATATTTCTCGTGGCTGTG 2952 |||||| |||||| ||||| |||||||| ||||| | |||| |||||| ||||||||| Sbjct 3127 GGTGGCGGACCATCTCTATTCTAGATTTGCTATAGCTCTATACGATTTCTTGTGGCTGTG 3186 Query 2953 Gtattttatatataactctttaaataatattatatttcttaaagaggtataaatag--aa 3010 || ||||||| |||||||||||||| |||||| |||||||||||||||||||| || Sbjct 3187 GTTATTTATATCAAACTCTTTAAATAAGTTTATATATCTTAAAGAGGTATAAATAGGAAA 3246 Query 3011 tataaCGTTAGCTATATAGCTAGAAGTATATTA 3043 || ||| ||||||||||| ||||| | ||||| Sbjct 3247 TAGAAC--TAGCTATATAGTTAGAAATGTATTA 3277 >seq1896 Length=105120 Score = 104 bits (114), Expect = 7e-19 Identities = 114/151 (75%), Gaps = 12/151 (8%) Strand=Plus/Minus Query 2900 GACCATTTCTATCCTAGATTTACTATAAATTTATAATATTTCTCGTGGCTGTGGtatttt 2959 || |||||||||||||||||||||||| |||||| |||||| |||||||||||||||| Sbjct 45777 GATCATTTCTATCCTAGATTTACTATAGCTTTATATAATTTCTTGTGGCTGTGGTATTTT 45718 Query 2960 atatataactctttaaataatatta----tatttcttaaagaggtataaata-gaatata 3014 ||| |||||||||| ||| ||| |||| ||| || ||||||| | |||| Sbjct 45717 ATA-------GTTTAAATAATTTTATACTTATATCTTGAAGGGGAATAAATAGGGTTATA 45665 Query 3015 aCGTTAGCTATATAGCTAGAAGTATATTACT 3045 | |||||| | | ||| | || ||| || Sbjct 45664 GCACTAGCTAGAGACCTAATAATAAATTGCT 45634 >seq1668 Length=82418 Score = 84.2 bits (92), Expect = 7e-13 Identities = 79/101 (78%), Gaps = 11/101 (11%) Strand=Plus/Plus Query 2905 TTTCTATCCTAGATTTACTATAAATTTATAATATTTCTCGTGGCTGTGGtattttatata 2964 |||||||||||||||||||||| |||||| |||||| |||| |||||||||||||| Sbjct 67357 TTTCTATCCTAGATTTACTATAGCTTTATATGATTTCTTGTGGGTGTGGTATTTTATA-- 67414 Query 2965 taactctttaaataatatta----tatttcttaaagaggta 3001 ||| |||||| ||| ||| |||| |||||||| Sbjct 67415 -----GTTTTAATAATTTTATACTTATATCTTGAAGAGGTA 67450 >seq171 Length=184467 Score = 80.6 bits (88), Expect = 8e-12 Identities = 85/108 (79%), Gaps = 8/108 (7%) Strand=Plus/Plus Query 2905 TTTCTATCCTAGATTTACTATAAATTTATAAT---ATTTCTCGTGGCTGTGGtattttat 2961 ||||||||||||||||| |||| || ||||| |||||| |||||||||||||||||| Sbjct 158781 TTTCTATCCTAGATTTAATATAGCTTCATAATATGATTTCTTGTGGCTGTGGTATTTTAT 158840 Query 2962 atataactctttaaat-aatattatatttcttaaagaggtataaatag 3008 | | | | ||| | ||| | ||| || | ||||||||||||||| Sbjct 158841 AGTT---TTTATAATTGTATACT-TATATCCTGAAGAGGTATAAATAG 158884 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 14946181020480