Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Operophtera_20brumata_20[genbank_20GCA_5F001266575.1_202015-08-11]
25,801 sequences; 638,207,720 total letters
Query= NC_008930.1
Length=4829
Score E
Sequences producing significant alignments: (Bits) Value
seq9855 167 7e-38
seq6422 167 7e-38
seq2447 143 8e-31
seq7981 100 9e-18
seq6263 95.1 4e-16
seq3986 78.8 3e-11
seq1896 77.0 1e-10
>seq9855
Length=15086
Score = 167 bits (184), Expect = 7e-38
Identities = 134/159 (84%), Gaps = 2/159 (1%)
Strand=Plus/Plus
Query 3134 ATACACTACTAGCTATATAGCTAATATTATATCCTATTTATACCTCTTTAAGATATTTAA 3193
||||| | |||||| | ||||| | | ||||| ||||||||||||||||||||||| |||
Sbjct 3115 ATACATTTCTAGCTGT-TAGCTTACACTATATGCTATTTATACCTCTTTAAGATATATAA 3173
Query 3194 ACTTATGTAAAGAGTTATATATAAAATACCAAAGCCACGGGAAATAATATAAGGCTATAG 3253
||||||||||||||||| ||||||||||||| ||||||||||||||||||| ||||| |
Sbjct 3174 ACTTATGTAAAGAGTTACATATAAAATACCACAGCCACGGGAAATAATATAGAGCTAT-G 3232
Query 3254 GAAATTCTAGAATAACGATTAACCGCCACGTTCGCCACA 3292
| || ||||| | | ||| | |||||||| ||||||
Sbjct 3233 GTAAGTCTAGTACTAGAATTGGCAGCCACGTTTGCCACA 3271
>seq6422
Length=30189
Score = 167 bits (184), Expect = 7e-38
Identities = 134/159 (84%), Gaps = 2/159 (1%)
Strand=Plus/Plus
Query 3134 ATACACTACTAGCTATATAGCTAATATTATATCCTATTTATACCTCTTTAAGATATTTAA 3193
||||| | |||||| | ||||| ||| ||||| ||||||||||||||||||||||| |||
Sbjct 21099 ATACATTTCTAGCTGT-TAGCTTATACTATATGCTATTTATACCTCTTTAAGATATATAA 21157
Query 3194 ACTTATGTAAAGAGTTATATATAAAATACCAAAGCCACGGGAAATAATATAAGGCTATAG 3253
||||||||||||||||| ||||||||||||| ||||||||||||||||||| ||||| |
Sbjct 21158 ACTTATGTAAAGAGTTACATATAAAATACCACAGCCACGGGAAATAATATAGAGCTAT-G 21216
Query 3254 GAAATTCTAGAATAACGATTAACCGCCACGTTCGCCACA 3292
| || ||||| | | ||| | |||||||| |||||
Sbjct 21217 GTAAGTCTAGTACTAGAATTGGCAGCCACGTTTACCACA 21255
>seq2447
Length=64305
Score = 143 bits (158), Expect = 8e-31
Identities = 122/149 (82%), Gaps = 1/149 (1%)
Strand=Plus/Minus
Query 3134 ATACACTACTAGCTATATAGCTAATATTATATCCTATTTATACCTCTTTAAGATATTTAA 3193
||||| | ||| ||||||||||| | ||| ||||||||||||||||||||||||| |||
Sbjct 3275 ATACATTTCTAACTATATAGCTAGTTCTATTTCCTATTTATACCTCTTTAAGATATATAA 3216
Query 3194 ACTTATGTAAAGAGTTATATATAAAATACCAAAGCCACGGGAAATAATATAAGGCTATAG 3253
|||||| ||||||||| ||||||| |||| |||||| ||||| |||| |||||||
Sbjct 3215 ACTTATTTAAAGAGTTTGATATAAATAACCACAGCCACAAGAAATCGTATAGAGCTATAG 3156
Query 3254 GAAATTCTAGAATAACGATTAACCGCCAC 3282
||| ||||||||| ||| |||||||
Sbjct 3155 CAAA-TCTAGAATAGAGATGGTCCGCCAC 3128
>seq7981
Length=21338
Score = 100 bits (110), Expect = 9e-18
Identities = 115/151 (76%), Gaps = 13/151 (9%)
Strand=Plus/Plus
Query 3077 AGCTTATGTTCATAGACCAT-TAGTCGCGTAGCCTTTAGCGCCTATACCTTTAGCTACAT 3135
|| |||| || ||| ||||| || || |||| |||| || |||||||||||| || |
Sbjct 10200 AGTTTATATTTATACACCATATATTCCTATAGCTTTTAACGGCTATACCTTTAGTTA--T 10257
Query 3136 ACACTACTAGCTA----TATAGCTAATATTATATCCTATTTATACCTCTTTAAGATATTT 3191
|| | ||||| | ||||||||||| ||||||||||| || ||||||| |||||||
Sbjct 10258 ACCTTTCTAGCCACACCTATAGCTAATACCATATCCTATTTCTATCTCTTTAGGATATTT 10317
Query 3192 AAACT----TATGTAAAGAGTTA--TATATA 3216
||||| ||| ||||||||| ||||||
Sbjct 10318 AAACTTGGGTATTAAAAGAGTTAGGTATATA 10348
>seq6263
Length=31128
Score = 95.1 bits (104), Expect = 4e-16
Identities = 91/114 (80%), Gaps = 7/114 (6%)
Strand=Plus/Minus
Query 3077 AGCTTATGTTCATAGACCAT-TAGTCGCGTAGCCTTTAGCG----CCTATACCTTTAGCT 3131
||||||| || ||| || || || ||| |||| |||| || |||||||||||||||
Sbjct 12771 AGCTTATATTTATATACTATATATTCGTATAGCTTTTAACGGCTACCTATACCTTTAGCT 12712
Query 3132 ACATACACTACTAGCTATATAGCTAATATTATATCCTATTTATACCTCTTTAAG 3185
| ||| | ||||| |||||||||||| |||||||||||||| |||||||||
Sbjct 12711 A--TACCTTTCTAGCCATATAGCTAATACCATATCCTATTTATATCTCTTTAAG 12660
>seq3986
Length=47825
Score = 78.8 bits (86), Expect = 3e-11
Identities = 85/112 (76%), Gaps = 7/112 (6%)
Strand=Plus/Plus
Query 3097 TAGTCGCGTAGCCTTTAGCGCCTATACCTTTAGCTACATACACTACTAGCTATA-----T 3151
|| ||| |||| |||| || |||||||||||| || ||| | ||||| | | |
Sbjct 17701 TATTCGTATAGCTTTTAACGGCTATACCTTTAGTTA--TACCTTTCTAGCCACACCTAAT 17758
Query 3152 AGCTAATATTATATCCTATTTATACCTCTTTAAGATATTTAAACTTATGTAA 3203
|||||||| ||||||||| | || ||||| | |||||||||||||| ||||
Sbjct 17759 AGCTAATACCATATCCTATATCTATCTCTTGAGGATATTTAAACTTAGGTAA 17810
>seq1896
Length=105120
Score = 77.0 bits (84), Expect = 1e-10
Identities = 98/133 (74%), Gaps = 13/133 (10%)
Strand=Plus/Plus
Query 3140 TACTAGCTATATAGCTAATATTATATCC-TATTTATACCTCTTTAAGATATT----TAAA 3194
|| ||| | | |||||| | |||| || ||||||| || ||| ||||||| ||||
Sbjct 45644 TATTAGGTCTCTAGCTAGTGCTATAACCCTATTTATTCCCCTTCAAGATATAAGTATAAA 45703
Query 3195 CTTATGTAAAGAGTTATATATAAAATACCAAAGCCACGGGAAATAATATAAGGCTATAGG 3254
|||| |||| |||||||||||| |||||| ||||| |||||| |||||||
Sbjct 45704 ATTATTTAAAC-------TATAAAATACCACAGCCACAAGAAATTATATAAAGCTATAGT 45756
Query 3255 AAATTCTAGAATA 3267
||| ||||| |||
Sbjct 45757 AAA-TCTAGGATA 45768
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 15336470850210
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |