Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Operophtera_20brumata_20[genbank_20GCA_5F001266575.1_202015-08-11] 25,801 sequences; 638,207,720 total letters Query= NC_008930.1 Length=4829 Score E Sequences producing significant alignments: (Bits) Value seq9855 167 7e-38 seq6422 167 7e-38 seq2447 143 8e-31 seq7981 100 9e-18 seq6263 95.1 4e-16 seq3986 78.8 3e-11 seq1896 77.0 1e-10 >seq9855 Length=15086 Score = 167 bits (184), Expect = 7e-38 Identities = 134/159 (84%), Gaps = 2/159 (1%) Strand=Plus/Plus Query 3134 ATACACTACTAGCTATATAGCTAATATTATATCCTATTTATACCTCTTTAAGATATTTAA 3193 ||||| | |||||| | ||||| | | ||||| ||||||||||||||||||||||| ||| Sbjct 3115 ATACATTTCTAGCTGT-TAGCTTACACTATATGCTATTTATACCTCTTTAAGATATATAA 3173 Query 3194 ACTTATGTAAAGAGTTATATATAAAATACCAAAGCCACGGGAAATAATATAAGGCTATAG 3253 ||||||||||||||||| ||||||||||||| ||||||||||||||||||| ||||| | Sbjct 3174 ACTTATGTAAAGAGTTACATATAAAATACCACAGCCACGGGAAATAATATAGAGCTAT-G 3232 Query 3254 GAAATTCTAGAATAACGATTAACCGCCACGTTCGCCACA 3292 | || ||||| | | ||| | |||||||| |||||| Sbjct 3233 GTAAGTCTAGTACTAGAATTGGCAGCCACGTTTGCCACA 3271 >seq6422 Length=30189 Score = 167 bits (184), Expect = 7e-38 Identities = 134/159 (84%), Gaps = 2/159 (1%) Strand=Plus/Plus Query 3134 ATACACTACTAGCTATATAGCTAATATTATATCCTATTTATACCTCTTTAAGATATTTAA 3193 ||||| | |||||| | ||||| ||| ||||| ||||||||||||||||||||||| ||| Sbjct 21099 ATACATTTCTAGCTGT-TAGCTTATACTATATGCTATTTATACCTCTTTAAGATATATAA 21157 Query 3194 ACTTATGTAAAGAGTTATATATAAAATACCAAAGCCACGGGAAATAATATAAGGCTATAG 3253 ||||||||||||||||| ||||||||||||| ||||||||||||||||||| ||||| | Sbjct 21158 ACTTATGTAAAGAGTTACATATAAAATACCACAGCCACGGGAAATAATATAGAGCTAT-G 21216 Query 3254 GAAATTCTAGAATAACGATTAACCGCCACGTTCGCCACA 3292 | || ||||| | | ||| | |||||||| ||||| Sbjct 21217 GTAAGTCTAGTACTAGAATTGGCAGCCACGTTTACCACA 21255 >seq2447 Length=64305 Score = 143 bits (158), Expect = 8e-31 Identities = 122/149 (82%), Gaps = 1/149 (1%) Strand=Plus/Minus Query 3134 ATACACTACTAGCTATATAGCTAATATTATATCCTATTTATACCTCTTTAAGATATTTAA 3193 ||||| | ||| ||||||||||| | ||| ||||||||||||||||||||||||| ||| Sbjct 3275 ATACATTTCTAACTATATAGCTAGTTCTATTTCCTATTTATACCTCTTTAAGATATATAA 3216 Query 3194 ACTTATGTAAAGAGTTATATATAAAATACCAAAGCCACGGGAAATAATATAAGGCTATAG 3253 |||||| ||||||||| ||||||| |||| |||||| ||||| |||| ||||||| Sbjct 3215 ACTTATTTAAAGAGTTTGATATAAATAACCACAGCCACAAGAAATCGTATAGAGCTATAG 3156 Query 3254 GAAATTCTAGAATAACGATTAACCGCCAC 3282 ||| ||||||||| ||| ||||||| Sbjct 3155 CAAA-TCTAGAATAGAGATGGTCCGCCAC 3128 >seq7981 Length=21338 Score = 100 bits (110), Expect = 9e-18 Identities = 115/151 (76%), Gaps = 13/151 (9%) Strand=Plus/Plus Query 3077 AGCTTATGTTCATAGACCAT-TAGTCGCGTAGCCTTTAGCGCCTATACCTTTAGCTACAT 3135 || |||| || ||| ||||| || || |||| |||| || |||||||||||| || | Sbjct 10200 AGTTTATATTTATACACCATATATTCCTATAGCTTTTAACGGCTATACCTTTAGTTA--T 10257 Query 3136 ACACTACTAGCTA----TATAGCTAATATTATATCCTATTTATACCTCTTTAAGATATTT 3191 || | ||||| | ||||||||||| ||||||||||| || ||||||| ||||||| Sbjct 10258 ACCTTTCTAGCCACACCTATAGCTAATACCATATCCTATTTCTATCTCTTTAGGATATTT 10317 Query 3192 AAACT----TATGTAAAGAGTTA--TATATA 3216 ||||| ||| ||||||||| |||||| Sbjct 10318 AAACTTGGGTATTAAAAGAGTTAGGTATATA 10348 >seq6263 Length=31128 Score = 95.1 bits (104), Expect = 4e-16 Identities = 91/114 (80%), Gaps = 7/114 (6%) Strand=Plus/Minus Query 3077 AGCTTATGTTCATAGACCAT-TAGTCGCGTAGCCTTTAGCG----CCTATACCTTTAGCT 3131 ||||||| || ||| || || || ||| |||| |||| || ||||||||||||||| Sbjct 12771 AGCTTATATTTATATACTATATATTCGTATAGCTTTTAACGGCTACCTATACCTTTAGCT 12712 Query 3132 ACATACACTACTAGCTATATAGCTAATATTATATCCTATTTATACCTCTTTAAG 3185 | ||| | ||||| |||||||||||| |||||||||||||| ||||||||| Sbjct 12711 A--TACCTTTCTAGCCATATAGCTAATACCATATCCTATTTATATCTCTTTAAG 12660 >seq3986 Length=47825 Score = 78.8 bits (86), Expect = 3e-11 Identities = 85/112 (76%), Gaps = 7/112 (6%) Strand=Plus/Plus Query 3097 TAGTCGCGTAGCCTTTAGCGCCTATACCTTTAGCTACATACACTACTAGCTATA-----T 3151 || ||| |||| |||| || |||||||||||| || ||| | ||||| | | | Sbjct 17701 TATTCGTATAGCTTTTAACGGCTATACCTTTAGTTA--TACCTTTCTAGCCACACCTAAT 17758 Query 3152 AGCTAATATTATATCCTATTTATACCTCTTTAAGATATTTAAACTTATGTAA 3203 |||||||| ||||||||| | || ||||| | |||||||||||||| |||| Sbjct 17759 AGCTAATACCATATCCTATATCTATCTCTTGAGGATATTTAAACTTAGGTAA 17810 >seq1896 Length=105120 Score = 77.0 bits (84), Expect = 1e-10 Identities = 98/133 (74%), Gaps = 13/133 (10%) Strand=Plus/Plus Query 3140 TACTAGCTATATAGCTAATATTATATCC-TATTTATACCTCTTTAAGATATT----TAAA 3194 || ||| | | |||||| | |||| || ||||||| || ||| ||||||| |||| Sbjct 45644 TATTAGGTCTCTAGCTAGTGCTATAACCCTATTTATTCCCCTTCAAGATATAAGTATAAA 45703 Query 3195 CTTATGTAAAGAGTTATATATAAAATACCAAAGCCACGGGAAATAATATAAGGCTATAGG 3254 |||| |||| |||||||||||| |||||| ||||| |||||| ||||||| Sbjct 45704 ATTATTTAAAC-------TATAAAATACCACAGCCACAAGAAATTATATAAAGCTATAGT 45756 Query 3255 AAATTCTAGAATA 3267 ||| ||||| ||| Sbjct 45757 AAA-TCTAGGATA 45768 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 15336470850210