Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Operophtera_20brumata_20[genbank_20GCA_5F001266575.1_202015-08-11] 25,801 sequences; 638,207,720 total letters Query= NC_008931.1 Length=4886 Score E Sequences producing significant alignments: (Bits) Value seq9855 122 3e-24 seq6422 122 3e-24 seq16437 80.6 8e-12 >seq9855 Length=15086 Score = 122 bits (134), Expect = 3e-24 Identities = 180/262 (69%), Gaps = 3/262 (1%) Strand=Plus/Plus Query 3545 GTGGCGGGTGTGGCGGCCAATTCCAATCCCACCTCAGCTTATGTTtataccatatactta 3604 |||||||||||||| ||| | || || |||||||||||||| | |||| |||| | | Sbjct 3027 GTGGCGGGTGTGGCAGCCCAGATCA-TCACACCTCAGCTTATGCT-ATACTATATTTTCA 3084 Query 3605 tatagcttatagtgtctatgctctatagcaatatattcctagctatatagctaATGCTAC 3664 |||| ||| || || |||||| ||||||||||| ||| |||||| | ||||| | ||| Sbjct 3085 TATAACTTTTATTGGCTATGCCCTATAGCAATACATTTCTAGCTGT-TAGCTTACACTAT 3143 Query 3665 ATTATATCTATACCTCTTTAAGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTACC 3724 || ||| ||||||||||||||| |||| Sbjct 3144 ATGCTATTTATACCTCTTTAAGATATATAAACTTATGTAAAGAGTTACATATAAAATACC 3203 Query 3725 ACAGCCACGGAAAATAATATTAAGCTATTGTAAATCTAGAATTAGAAATTGCTGTCATAC 3784 |||||||||| ||||||||| |||||| |||| ||||| | ||||| | || | || Sbjct 3204 ACAGCCACGGGAAATAATATAGAGCTATGGTAAGTCTAGTACTAGAATTGGCAGCCACGT 3263 Query 3785 TCGCCACACTCGTGTCTCCGGT 3806 | |||||| | |||| |||| Sbjct 3264 TTGCCACATCAGCGTCTTCGGT 3285 >seq6422 Length=30189 Score = 122 bits (134), Expect = 3e-24 Identities = 159/227 (70%), Gaps = 3/227 (1%) Strand=Plus/Plus Query 3545 GTGGCGGGTGTGGCGGCCAATTCCAATCCCACCTCAGCTTATGTTtataccatatactta 3604 |||||||||||||| ||| | || || |||||||||||||| | |||| |||| | | Sbjct 21011 GTGGCGGGTGTGGCAGCCCAGATCA-TCTCACCTCAGCTTATGCT-ATACTATATTTTCA 21068 Query 3605 tatagcttatagtgtctatgctctatagcaatatattcctagctatatagctaATGCTAC 3664 |||| ||| || || |||||| ||||||||||| ||| |||||| | ||||| || ||| Sbjct 21069 TATAACTTTTATTGGCTATGCCCTATAGCAATACATTTCTAGCTGT-TAGCTTATACTAT 21127 Query 3665 ATTATATCTATACCTCTTTAAGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTACC 3724 || ||| ||||||||||||||| |||| Sbjct 21128 ATGCTATTTATACCTCTTTAAGATATATAAACTTATGTAAAGAGTTACATATAAAATACC 21187 Query 3725 ACAGCCACGGAAAATAATATTAAGCTATTGTAAATCTAGAATTAGAA 3771 |||||||||| ||||||||| |||||| |||| ||||| | ||||| Sbjct 21188 ACAGCCACGGGAAATAATATAGAGCTATGGTAAGTCTAGTACTAGAA 21234 >seq16437 Length=3918 Score = 80.6 bits (88), Expect = 8e-12 Identities = 119/157 (76%), Gaps = 10/157 (6%) Strand=Plus/Plus Query 3535 AAGTC-GCGATGTGGCGGGTGTGGCGGCCAATTCCAATCCCACCTCAGCTTATGTTtata 3593 ||||| ||| ||| || |||| ||||| | |||| ||| |||||||||||| || ||| Sbjct 1009 AAGTCTGCG-TGTAGCAGGTG-GGCGGGTATATCCAGTCCAACCTCAGCTTATATT-ATA 1065 Query 3594 ccat-atactta--tatagcttatagtgtctatgctctatagcaatatattcctagctat 3650 | || ||| || |||| ||| || || ||| ||| ||| |||| ||| ||| |||| Sbjct 1066 CTATTATAATTTACTATA-CTTTTA-TGACTACGCT-TATTATAATACATTTCTAACTAT 1122 Query 3651 atagctaATGCTACATTATATCTATACCTCTTTAAGA 3687 ||||||| | ||| | ||| ||||||||||||||| Sbjct 1123 ATAGCTAGTTCTATTTCCTATTTATACCTCTTTAAGA 1159 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 15518819377215