Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Operophtera_20brumata_20[genbank_20GCA_5F001266575.1_202015-08-11] 25,801 sequences; 638,207,720 total letters Query= NC_008932.1 Length=5156 Score E Sequences producing significant alignments: (Bits) Value seq9855 167 8e-38 seq6422 161 3e-36 seq2447 107 6e-20 >seq9855 Length=15086 Score = 167 bits (184), Expect = 8e-38 Identities = 237/324 (73%), Gaps = 16/324 (5%) Strand=Plus/Plus Query 4398 TCATCGGATTCATCTCGCCGAGACGAATCCAATGAGCCCCGGTACCTGAC--AAAATTCC 4455 ||||||||||| || || | |||||||||||| | | || | | ||| ||||| | Sbjct 2943 TCATCGGATTCCTCGCGTCAAGACGAATCCAACGGGTCCATGGTC--GACCAAAAATGGC 3000 Query 4456 TTCGGAAAGTGTCTCAGCCGTGAT--GTGGCGGGTGTGGCAGCCATTACCAATCCACCTT 4513 | | | |||| | | | || |||||||||||||||||| | || ||||| Sbjct 3001 TACTGGAAGTCCCCGATTGGAAATTGGTGGCGGGTGTGGCAGCCCAGATCATCACACCTC 3060 Query 4514 GGCCTATGCCTATAATAAC----CATATAGCTTTTAACGgctatgtcc-atagctatata 4568 || ||||| |||| || |||||| |||||| ||||||| || ||||| ||| | Sbjct 3061 AGCTTATGC-TATACTATATTTTCATATAACTTTTATTGGCTATGCCCTATAGCAATACA 3119 Query 4569 tttttaacgatatagctatcgctatatgctatatatacctctttaagatatattatatTC 4628 ||| || | | ||||| | ||||||||||| |||||||||||||||||||| | || Sbjct 3120 TTTCTAGCTGT-TAGCTTACACTATATGCTATTTATACCTCTTTAAGATATATAAACTTA 3178 Query 4629 TTTAAAGAGTTATCAATAAAAGACCACAGCCACGGGAAATATTATAGCTTTATATTAATT 4688 | |||||||||| |||||| ||||||||||||||||||| ||||| ||| ||| | Sbjct 3179 TGTAAAGAGTTACATATAAAATACCACAGCCACGGGAAATAATATAGAGCTATGGTAAGT 3238 Query 4689 CTAGGA-TAGTCCAGTGGCAGCCA 4711 |||| | ||| | ||||||||| Sbjct 3239 CTAGTACTAG--AATTGGCAGCCA 3260 Score = 165 bits (182), Expect = 3e-37 Identities = 250/347 (72%), Gaps = 19/347 (5%) Strand=Plus/Plus Query 1835 TCATCGGATTCATCTCGCCGGGACGAATTCAATGAGCCC----TGAAACATTTCAAAATT 1890 ||||||||||| || || | ||||||| ||| | | || | | || ||||| Sbjct 2943 TCATCGGATTCCTCGCGTCAAGACGAATCCAACGGGTCCATGGTCGACCA----AAAATG 2998 Query 1891 CCTACGGGAAGTGTCTCAGCCGTGAT--GTGGCAGGTGTGGCAGCCATTACCAGTCCACC 1948 |||| |||||| | | | || ||||| |||||||||||| | || |||| Sbjct 2999 GCTACTGGAAGTCCCCGATTGGAAATTGGTGGCGGGTGTGGCAGCCCAGATCATCACACC 3058 Query 1949 TCGGCCTATGCCTATATGTAATAATAATCATATAGCCTTTAACGGCTGTACc-tatagct 2007 || || ||||| ||| ||| | ||||||| | |||| |||| | || |||||| Sbjct 3059 TCAGCTTATGC---TATACTATATTT-TCATATAACTTTTATTGGCTATGCCCTATAGCA 3114 Query 2008 atatacattcctagcgatatagctatcgctatatgctatatatacctctttaagatatat 2067 ||| |||| ||||| | ||||| | ||||||||||| |||||||||||||||||||| Sbjct 3115 ATA--CATTTCTAGCTGT-TAGCTTACACTATATGCTATTTATACCTCTTTAAGATATAT 3171 Query 2068 tatatTCTTTAAAGAGTTATCAATAAAAGACCACAGCCACGGGAAATACTATAGCTTTAT 2127 | || | |||||||||| |||||| ||||||||||||||||||| ||||| ||| Sbjct 3172 AAACTTATGTAAAGAGTTACATATAAAATACCACAGCCACGGGAAATAATATAGAGCTAT 3231 Query 2128 GTTAAATCAAG-GCTAGAGATGACAGCCAAAGTCGCCACATCACCGT 2173 | ||| || || ||||| || |||||| | ||||||||| ||| Sbjct 3232 GGTAAGTCTAGTACTAGAATTGGCAGCCACGTTTGCCACATCAGCGT 3278 >seq6422 Length=30189 Score = 161 bits (178), Expect = 3e-36 Identities = 236/324 (73%), Gaps = 16/324 (5%) Strand=Plus/Plus Query 4398 TCATCGGATTCATCTCGCCGAGACGAATCCAATGAGCCCCGGTACCTGAC--AAAATTCC 4455 ||||||||||| || || | |||||||||||| | | || | | ||| ||||| | Sbjct 20927 TCATCGGATTCCTCGCGTCAAGACGAATCCAACGGGTCCATGGTC--GACCAAAAATGGC 20984 Query 4456 TTCGGAAAGTGTCTCAGCCGTGAT--GTGGCGGGTGTGGCAGCCATTACCAATCCACCTT 4513 | | | |||| | | | || |||||||||||||||||| | || ||||| Sbjct 20985 TACTGGAAGTCCCCGATTGGAAATTGGTGGCGGGTGTGGCAGCCCAGATCATCTCACCTC 21044 Query 4514 GGCCTATGCCTATAATAAC----CATATAGCTTTTAACGgctatgtcc-atagctatata 4568 || ||||| |||| || |||||| |||||| ||||||| || ||||| ||| | Sbjct 21045 AGCTTATGC-TATACTATATTTTCATATAACTTTTATTGGCTATGCCCTATAGCAATACA 21103 Query 4569 tttttaacgatatagctatcgctatatgctatatatacctctttaagatatattatatTC 4628 ||| || | | ||||| ||||||||||| |||||||||||||||||||| | || Sbjct 21104 TTTCTAGCTGT-TAGCTTATACTATATGCTATTTATACCTCTTTAAGATATATAAACTTA 21162 Query 4629 TTTAAAGAGTTATCAATAAAAGACCACAGCCACGGGAAATATTATAGCTTTATATTAATT 4688 | |||||||||| |||||| ||||||||||||||||||| ||||| ||| ||| | Sbjct 21163 TGTAAAGAGTTACATATAAAATACCACAGCCACGGGAAATAATATAGAGCTATGGTAAGT 21222 Query 4689 CTAGGA-TAGTCCAGTGGCAGCCA 4711 |||| | ||| | ||||||||| Sbjct 21223 CTAGTACTAG--AATTGGCAGCCA 21244 Score = 156 bits (172), Expect = 1e-34 Identities = 248/347 (71%), Gaps = 19/347 (5%) Strand=Plus/Plus Query 1835 TCATCGGATTCATCTCGCCGGGACGAATTCAATGAGCCC----TGAAACATTTCAAAATT 1890 ||||||||||| || || | ||||||| ||| | | || | | || ||||| Sbjct 20927 TCATCGGATTCCTCGCGTCAAGACGAATCCAACGGGTCCATGGTCGACCA----AAAATG 20982 Query 1891 CCTACGGGAAGTGTCTCAGCCGTGAT--GTGGCAGGTGTGGCAGCCATTACCAGTCCACC 1948 |||| |||||| | | | || ||||| |||||||||||| | || |||| Sbjct 20983 GCTACTGGAAGTCCCCGATTGGAAATTGGTGGCGGGTGTGGCAGCCCAGATCATCTCACC 21042 Query 1949 TCGGCCTATGCCTATATGTAATAATAATCATATAGCCTTTAACGGCTGTACc-tatagct 2007 || || ||||| ||| ||| | ||||||| | |||| |||| | || |||||| Sbjct 21043 TCAGCTTATGC---TATACTATATTT-TCATATAACTTTTATTGGCTATGCCCTATAGCA 21098 Query 2008 atatacattcctagcgatatagctatcgctatatgctatatatacctctttaagatatat 2067 ||| |||| ||||| | ||||| ||||||||||| |||||||||||||||||||| Sbjct 21099 ATA--CATTTCTAGCTGT-TAGCTTATACTATATGCTATTTATACCTCTTTAAGATATAT 21155 Query 2068 tatatTCTTTAAAGAGTTATCAATAAAAGACCACAGCCACGGGAAATACTATAGCTTTAT 2127 | || | |||||||||| |||||| ||||||||||||||||||| ||||| ||| Sbjct 21156 AAACTTATGTAAAGAGTTACATATAAAATACCACAGCCACGGGAAATAATATAGAGCTAT 21215 Query 2128 GTTAAATCAAG-GCTAGAGATGACAGCCAAAGTCGCCACATCACCGT 2173 | ||| || || ||||| || |||||| | |||||||| ||| Sbjct 21216 GGTAAGTCTAGTACTAGAATTGGCAGCCACGTTTACCACATCAGCGT 21262 >seq2447 Length=64305 Score = 107 bits (118), Expect = 6e-20 Identities = 107/139 (77%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 2010 atacattcctagcgatatagctatcgctatatgctatatatacctctttaagatatatta 2069 ||||||| ||| | ||||||||| |||| | |||| |||||||||||||||||||| | Sbjct 3275 ATACATTTCTAACTATATAGCTAGTTCTATTTCCTATTTATACCTCTTTAAGATATATAA 3216 Query 2070 tatTCTTTAAAGAGTTATCAATAAAAGACCACAGCCACGGGAAATACTATAGCTTTATGT 2129 || ||||||||||| ||||| ||||||||||| ||||| ||||| ||| Sbjct 3215 ACTTATTTAAAGAGTTTGATATAAATAACCACAGCCACAAGAAATCGTATAGAGCTATAG 3156 Query 2130 TAAATCAAGGCTAGAGATG 2148 ||||| || |||||||| Sbjct 3155 CAAATCTAGAATAGAGATG 3137 Score = 107 bits (118), Expect = 6e-20 Identities = 104/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 4564 atatatttttaacgatatagctatcgctatatgctatatatacctctttaagatatatta 4623 ||| |||| |||| ||||||||| |||| | |||| |||||||||||||||||||| | Sbjct 3275 ATACATTTCTAACTATATAGCTAGTTCTATTTCCTATTTATACCTCTTTAAGATATATAA 3216 Query 4624 tatTCTTTAAAGAGTTATCAATAAAAGACCACAGCCACGGGAAATATTATAGCTTTATAT 4683 || ||||||||||| ||||| ||||||||||| ||||| ||||| |||| Sbjct 3215 ACTTATTTAAAGAGTTTGATATAAATAACCACAGCCACAAGAAATCGTATAGAGCTATAG 3156 Query 4684 TAATTCTAGGATAG 4697 || ||||| |||| Sbjct 3155 CAAATCTAGAATAG 3142 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 16382575557765