Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Operophtera_20brumata_20[genbank_20GCA_5F001266575.1_202015-08-11]
25,801 sequences; 638,207,720 total letters
Query= NC_008933.1
Length=2060
Score E
Sequences producing significant alignments: (Bits) Value
seq9855 210 3e-51
seq6422 206 3e-50
seq2447 143 3e-31
seq16437 87.8 2e-14
seq6263 84.2 3e-13
>seq9855
Length=15086
Score = 210 bits (232), Expect = 3e-51
Identities = 211/265 (80%), Gaps = 8/265 (3%)
Strand=Plus/Plus
Query 1400 CTACGGGAAGTTCCCGAATCCCAGGTG-TGGCGAGTATGGCAGCCAA-ATCCTATCCTAC 1457
|||| |||||| ||||| | | || ||||| || |||||||| | ||| ||| ||
Sbjct 3000 CTACTGGAAGTCCCCGATTGGAAATTGGTGGCGGGTGTGGCAGCCCAGATC--ATCACAC 3057
Query 1458 CTCAGCTTATATTTATACTATATTTCCATACACCTTTTAATAGCTAT-ATCTATAGCAAT 1516
|||||||||| | ||||||||||| |||| | |||||| | ||||| ||||||||||
Sbjct 3058 CTCAGCTTATGCT-ATACTATATTTTCATATAACTTTTATTGGCTATGCCCTATAGCAAT 3116
Query 1517 ACATTCCTACCTATATAGCTAGCCttatatgctatttatacctctttaagaaatataaaa 1576
||||| ||| || | ||||| | |||||||||||||||||||||||||| |||||||
Sbjct 3117 ACATTTCTAGCTGT-TAGCTTACACTATATGCTATTTATACCTCTTTAAGATATATAAAC 3175
Query 1577 ttataaaaagagttatatataaaataccacagccac-gaaaataatataaagctataGCA 1635
|||| ||||||||| |||||||||||||||||||| | |||||||||| |||||| | |
Sbjct 3176 TTATGTAAAGAGTTACATATAAAATACCACAGCCACGGGAAATAATATAGAGCTATGGTA 3235
Query 1636 ATTCTAGAATAAGCTTGGCCAGCCA 1660
| ||||| | || | | ||||||
Sbjct 3236 AGTCTAGTACTAGAATTGGCAGCCA 3260
>seq6422
Length=30189
Score = 206 bits (228), Expect = 3e-50
Identities = 210/265 (79%), Gaps = 8/265 (3%)
Strand=Plus/Plus
Query 1400 CTACGGGAAGTTCCCGAATCCCAGGTG-TGGCGAGTATGGCAGCCAA-ATCCTATCCTAC 1457
|||| |||||| ||||| | | || ||||| || |||||||| | ||| | || ||
Sbjct 20984 CTACTGGAAGTCCCCGATTGGAAATTGGTGGCGGGTGTGGCAGCCCAGATCATCTC--AC 21041
Query 1458 CTCAGCTTATATTTATACTATATTTCCATACACCTTTTAATAGCTAT-ATCTATAGCAAT 1516
|||||||||| | ||||||||||| |||| | |||||| | ||||| ||||||||||
Sbjct 21042 CTCAGCTTATGCT-ATACTATATTTTCATATAACTTTTATTGGCTATGCCCTATAGCAAT 21100
Query 1517 ACATTCCTACCTATATAGCTAGCCttatatgctatttatacctctttaagaaatataaaa 1576
||||| ||| || | ||||| |||||||||||||||||||||||||| |||||||
Sbjct 21101 ACATTTCTAGCTGT-TAGCTTATACTATATGCTATTTATACCTCTTTAAGATATATAAAC 21159
Query 1577 ttataaaaagagttatatataaaataccacagccac-gaaaataatataaagctataGCA 1635
|||| ||||||||| |||||||||||||||||||| | |||||||||| |||||| | |
Sbjct 21160 TTATGTAAAGAGTTACATATAAAATACCACAGCCACGGGAAATAATATAGAGCTATGGTA 21219
Query 1636 ATTCTAGAATAAGCTTGGCCAGCCA 1660
| ||||| | || | | ||||||
Sbjct 21220 AGTCTAGTACTAGAATTGGCAGCCA 21244
>seq2447
Length=64305
Score = 143 bits (158), Expect = 3e-31
Identities = 113/134 (84%), Gaps = 1/134 (1%)
Strand=Plus/Minus
Query 1514 AATACATTCCTACCTATATAGCTAGCCttatatgctatttatacctctttaagaaatata 1573
|||||||| ||| |||||||||||| ||| | |||||||||||||||||||| |||||
Sbjct 3276 AATACATTTCTAACTATATAGCTAGTTCTATTTCCTATTTATACCTCTTTAAGATATATA 3217
Query 1574 aaattataaaaagagttatatataaaataccacagccacga-aaataatataaagctata 1632
|| |||| |||||||| ||||||| ||||||||||| | |||| |||| |||||||
Sbjct 3216 AACTTATTTAAAGAGTTTGATATAAATAACCACAGCCACAAGAAATCGTATAGAGCTATA 3157
Query 1633 GCAATTCTAGAATA 1646
|||| |||||||||
Sbjct 3156 GCAAATCTAGAATA 3143
>seq16437
Length=3918
Score = 87.8 bits (96), Expect = 2e-14
Identities = 142/206 (69%), Gaps = 35/206 (17%)
Strand=Plus/Plus
Query 1446 ATCCTATCCTACCTCAGCTTATATTTATACTAT----ATTTCCATACACCTTTTAATAGC 1501
|||| ||| ||||||||||||||| ||||||| |||| | || || ||| || |
Sbjct 1038 ATCCAGTCCAACCTCAGCTTATATT-ATACTATTATAATTTAC-TATACTTTT--ATGAC 1093
Query 1502 TATATCTATAGCAATACATTCCTACCTATATAGCTAGCCttatatgctatttatacctct 1561
|| ||| |||||||| ||| |||||||||||| ||| | ||||||||||||||
Sbjct 1094 TACGCTTATTATAATACATTTCTAACTATATAGCTAGTTCTATTTCCTATTTATACCTCT 1153
Query 1562 ttaagaaatataaaattataaaaagagttatatataaaataccacagccacga-aaataa 1620
||||| ||||||| ||||||||||| | ||||
Sbjct 1154 TTAAG--------------------------ATATAAATAACCACAGCCACAAGAAATCG 1187
Query 1621 tataaagctataGCAATTCTAGAATA 1646
|||| ||||||||||| |||||||||
Sbjct 1188 TATAGAGCTATAGCAAATCTAGAATA 1213
>seq6263
Length=31128
Score = 84.2 bits (92), Expect = 3e-13
Identities = 87/113 (77%), Gaps = 6/113 (5%)
Strand=Plus/Minus
Query 1460 CAGCTTATATT--TATACTATATTTCCATACACCTTTTAA----TAGCTATATCTATAGC 1513
||||||||||| |||||||||| | | || | ||||||| || ||||| || ||||
Sbjct 12772 CAGCTTATATTTATATACTATATATTCGTATAGCTTTTAACGGCTACCTATACCTTTAGC 12713
Query 1514 AATACATTCCTACCTATATAGCTAGCCttatatgctatttatacctctttaag 1566
|||| || ||| | ||||||||| |||| ||||||||| |||||||||
Sbjct 12712 TATACCTTTCTAGCCATATAGCTAATACCATATCCTATTTATATCTCTTTAAG 12660
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 6481422723916
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |