Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Operophtera_20brumata_20[genbank_20GCA_5F001266575.1_202015-08-11] 25,801 sequences; 638,207,720 total letters Query= NC_008933.1 Length=2060 Score E Sequences producing significant alignments: (Bits) Value seq9855 210 3e-51 seq6422 206 3e-50 seq2447 143 3e-31 seq16437 87.8 2e-14 seq6263 84.2 3e-13 >seq9855 Length=15086 Score = 210 bits (232), Expect = 3e-51 Identities = 211/265 (80%), Gaps = 8/265 (3%) Strand=Plus/Plus Query 1400 CTACGGGAAGTTCCCGAATCCCAGGTG-TGGCGAGTATGGCAGCCAA-ATCCTATCCTAC 1457 |||| |||||| ||||| | | || ||||| || |||||||| | ||| ||| || Sbjct 3000 CTACTGGAAGTCCCCGATTGGAAATTGGTGGCGGGTGTGGCAGCCCAGATC--ATCACAC 3057 Query 1458 CTCAGCTTATATTTATACTATATTTCCATACACCTTTTAATAGCTAT-ATCTATAGCAAT 1516 |||||||||| | ||||||||||| |||| | |||||| | ||||| |||||||||| Sbjct 3058 CTCAGCTTATGCT-ATACTATATTTTCATATAACTTTTATTGGCTATGCCCTATAGCAAT 3116 Query 1517 ACATTCCTACCTATATAGCTAGCCttatatgctatttatacctctttaagaaatataaaa 1576 ||||| ||| || | ||||| | |||||||||||||||||||||||||| ||||||| Sbjct 3117 ACATTTCTAGCTGT-TAGCTTACACTATATGCTATTTATACCTCTTTAAGATATATAAAC 3175 Query 1577 ttataaaaagagttatatataaaataccacagccac-gaaaataatataaagctataGCA 1635 |||| ||||||||| |||||||||||||||||||| | |||||||||| |||||| | | Sbjct 3176 TTATGTAAAGAGTTACATATAAAATACCACAGCCACGGGAAATAATATAGAGCTATGGTA 3235 Query 1636 ATTCTAGAATAAGCTTGGCCAGCCA 1660 | ||||| | || | | |||||| Sbjct 3236 AGTCTAGTACTAGAATTGGCAGCCA 3260 >seq6422 Length=30189 Score = 206 bits (228), Expect = 3e-50 Identities = 210/265 (79%), Gaps = 8/265 (3%) Strand=Plus/Plus Query 1400 CTACGGGAAGTTCCCGAATCCCAGGTG-TGGCGAGTATGGCAGCCAA-ATCCTATCCTAC 1457 |||| |||||| ||||| | | || ||||| || |||||||| | ||| | || || Sbjct 20984 CTACTGGAAGTCCCCGATTGGAAATTGGTGGCGGGTGTGGCAGCCCAGATCATCTC--AC 21041 Query 1458 CTCAGCTTATATTTATACTATATTTCCATACACCTTTTAATAGCTAT-ATCTATAGCAAT 1516 |||||||||| | ||||||||||| |||| | |||||| | ||||| |||||||||| Sbjct 21042 CTCAGCTTATGCT-ATACTATATTTTCATATAACTTTTATTGGCTATGCCCTATAGCAAT 21100 Query 1517 ACATTCCTACCTATATAGCTAGCCttatatgctatttatacctctttaagaaatataaaa 1576 ||||| ||| || | ||||| |||||||||||||||||||||||||| ||||||| Sbjct 21101 ACATTTCTAGCTGT-TAGCTTATACTATATGCTATTTATACCTCTTTAAGATATATAAAC 21159 Query 1577 ttataaaaagagttatatataaaataccacagccac-gaaaataatataaagctataGCA 1635 |||| ||||||||| |||||||||||||||||||| | |||||||||| |||||| | | Sbjct 21160 TTATGTAAAGAGTTACATATAAAATACCACAGCCACGGGAAATAATATAGAGCTATGGTA 21219 Query 1636 ATTCTAGAATAAGCTTGGCCAGCCA 1660 | ||||| | || | | |||||| Sbjct 21220 AGTCTAGTACTAGAATTGGCAGCCA 21244 >seq2447 Length=64305 Score = 143 bits (158), Expect = 3e-31 Identities = 113/134 (84%), Gaps = 1/134 (1%) Strand=Plus/Minus Query 1514 AATACATTCCTACCTATATAGCTAGCCttatatgctatttatacctctttaagaaatata 1573 |||||||| ||| |||||||||||| ||| | |||||||||||||||||||| ||||| Sbjct 3276 AATACATTTCTAACTATATAGCTAGTTCTATTTCCTATTTATACCTCTTTAAGATATATA 3217 Query 1574 aaattataaaaagagttatatataaaataccacagccacga-aaataatataaagctata 1632 || |||| |||||||| ||||||| ||||||||||| | |||| |||| ||||||| Sbjct 3216 AACTTATTTAAAGAGTTTGATATAAATAACCACAGCCACAAGAAATCGTATAGAGCTATA 3157 Query 1633 GCAATTCTAGAATA 1646 |||| ||||||||| Sbjct 3156 GCAAATCTAGAATA 3143 >seq16437 Length=3918 Score = 87.8 bits (96), Expect = 2e-14 Identities = 142/206 (69%), Gaps = 35/206 (17%) Strand=Plus/Plus Query 1446 ATCCTATCCTACCTCAGCTTATATTTATACTAT----ATTTCCATACACCTTTTAATAGC 1501 |||| ||| ||||||||||||||| ||||||| |||| | || || ||| || | Sbjct 1038 ATCCAGTCCAACCTCAGCTTATATT-ATACTATTATAATTTAC-TATACTTTT--ATGAC 1093 Query 1502 TATATCTATAGCAATACATTCCTACCTATATAGCTAGCCttatatgctatttatacctct 1561 || ||| |||||||| ||| |||||||||||| ||| | |||||||||||||| Sbjct 1094 TACGCTTATTATAATACATTTCTAACTATATAGCTAGTTCTATTTCCTATTTATACCTCT 1153 Query 1562 ttaagaaatataaaattataaaaagagttatatataaaataccacagccacga-aaataa 1620 ||||| ||||||| ||||||||||| | |||| Sbjct 1154 TTAAG--------------------------ATATAAATAACCACAGCCACAAGAAATCG 1187 Query 1621 tataaagctataGCAATTCTAGAATA 1646 |||| ||||||||||| ||||||||| Sbjct 1188 TATAGAGCTATAGCAAATCTAGAATA 1213 >seq6263 Length=31128 Score = 84.2 bits (92), Expect = 3e-13 Identities = 87/113 (77%), Gaps = 6/113 (5%) Strand=Plus/Minus Query 1460 CAGCTTATATT--TATACTATATTTCCATACACCTTTTAA----TAGCTATATCTATAGC 1513 ||||||||||| |||||||||| | | || | ||||||| || ||||| || |||| Sbjct 12772 CAGCTTATATTTATATACTATATATTCGTATAGCTTTTAACGGCTACCTATACCTTTAGC 12713 Query 1514 AATACATTCCTACCTATATAGCTAGCCttatatgctatttatacctctttaag 1566 |||| || ||| | ||||||||| |||| ||||||||| ||||||||| Sbjct 12712 TATACCTTTCTAGCCATATAGCTAATACCATATCCTATTTATATCTCTTTAAG 12660 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6481422723916