Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Operophtera_20brumata_20[genbank_20GCA_5F001266575.1_202015-08-11] 25,801 sequences; 638,207,720 total letters Query= NC_008934.1 Length=2309 Score E Sequences producing significant alignments: (Bits) Value seq6422 203 5e-49 seq9855 194 2e-46 seq2447 168 1e-38 seq16437 114 2e-22 seq1896 114 2e-22 seq7981 100 4e-18 seq6263 93.3 6e-16 seq171 89.7 7e-15 >seq6422 Length=30189 Score = 203 bits (224), Expect = 5e-49 Identities = 234/308 (76%), Gaps = 8/308 (3%) Strand=Plus/Plus Query 534 GGCTCATTGAATTCCAAACACCAAGACGAAACCAACGAGCTCTCGTTCATCTCGATATTC 593 ||||||| | ||||| | ||||||||| |||||| | | | || | | || Sbjct 20924 GGCTCATCGGATTCCTCGCGTCAAGACGAATCCAACGGGTCCATGGTCGACCAAAAATGG 20983 Query 594 CAACCGGAAGTACCTGAGCGACAAT--GTGGCGGGTGTGGCAGCCATCTCCAGTCTTACC 651 | || |||||| || || | ||| |||||||||||||||||| || ||| ||| Sbjct 20984 CTACTGGAAGTCCCCGATTGGAAATTGGTGGCGGGTGTGGCAGCCCAGATCA-TCTCACC 21042 Query 652 GCAGCTTATATTCATGCTATATATATTCCTATAGTCTTTACTGGCTTTACC-TATAGCGA 710 |||||||| | || |||||| | || |||| |||| ||||| | || |||||| | Sbjct 21043 TCAGCTTATGCT-ATACTATATTT--TCATATAACTTTTATTGGCTATGCCCTATAGCAA 21099 Query 711 TATATTTCTAGCTCTATAGCTAGTCCTATATGCTATTTATACCTCTTTAAGATACATAAA 770 || |||||||||| | ||||| | ||||||||||||||||||||||||||||| ||||| Sbjct 21100 TACATTTCTAGCTGT-TAGCTTATACTATATGCTATTTATACCTCTTTAAGATATATAAA 21158 Query 771 CTTATTTAAAGAGTTATATATAAAATACCAAAGCCACGAAAAATCGTATGGAGCTATAGC 830 ||||| |||||||||| ||||||||||||| ||||||| |||| ||| ||||||| | Sbjct 21159 CTTATGTAAAGAGTTACATATAAAATACCACAGCCACGGGAAATAATATAGAGCTATGGT 21218 Query 831 AAATCTAG 838 || ||||| Sbjct 21219 AAGTCTAG 21226 >seq9855 Length=15086 Score = 194 bits (214), Expect = 2e-46 Identities = 232/308 (75%), Gaps = 8/308 (3%) Strand=Plus/Plus Query 534 GGCTCATTGAATTCCAAACACCAAGACGAAACCAACGAGCTCTCGTTCATCTCGATATTC 593 ||||||| | ||||| | ||||||||| |||||| | | | || | | || Sbjct 2940 GGCTCATCGGATTCCTCGCGTCAAGACGAATCCAACGGGTCCATGGTCGACCAAAAATGG 2999 Query 594 CAACCGGAAGTACCTGAGCGACAAT--GTGGCGGGTGTGGCAGCCATCTCCAGTCTTACC 651 | || |||||| || || | ||| |||||||||||||||||| || || ||| Sbjct 3000 CTACTGGAAGTCCCCGATTGGAAATTGGTGGCGGGTGTGGCAGCCCAGATCA-TCACACC 3058 Query 652 GCAGCTTATATTCATGCTATATATATTCCTATAGTCTTTACTGGCTTTACC-TATAGCGA 710 |||||||| | || |||||| | || |||| |||| ||||| | || |||||| | Sbjct 3059 TCAGCTTATGCT-ATACTATATTT--TCATATAACTTTTATTGGCTATGCCCTATAGCAA 3115 Query 711 TATATTTCTAGCTCTATAGCTAGTCCTATATGCTATTTATACCTCTTTAAGATACATAAA 770 || |||||||||| | ||||| ||||||||||||||||||||||||||||| ||||| Sbjct 3116 TACATTTCTAGCTGT-TAGCTTACACTATATGCTATTTATACCTCTTTAAGATATATAAA 3174 Query 771 CTTATTTAAAGAGTTATATATAAAATACCAAAGCCACGAAAAATCGTATGGAGCTATAGC 830 ||||| |||||||||| ||||||||||||| ||||||| |||| ||| ||||||| | Sbjct 3175 CTTATGTAAAGAGTTACATATAAAATACCACAGCCACGGGAAATAATATAGAGCTATGGT 3234 Query 831 AAATCTAG 838 || ||||| Sbjct 3235 AAGTCTAG 3242 >seq2447 Length=64305 Score = 168 bits (186), Expect = 1e-38 Identities = 117/133 (88%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 710 ATATATTTCTAGCTCTATAGCTAGTCCTATATGCTATTTATACCTCTTTAAGATACATAA 769 ||| ||||||| || |||||||||| |||| | |||||||||||||||||||||| |||| Sbjct 3275 ATACATTTCTAACTATATAGCTAGTTCTATTTCCTATTTATACCTCTTTAAGATATATAA 3216 Query 770 ACTTATTTAAAGAGTTATATATAAAATACCAAAGCCACGAAAAATCGTATGGAGCTATAG 829 |||||||||||||||| ||||||| |||| |||||| | ||||||||| ||||||||| Sbjct 3215 ACTTATTTAAAGAGTTTGATATAAATAACCACAGCCACAAGAAATCGTATAGAGCTATAG 3156 Query 830 CAAATCTAGGATA 842 ||||||||| ||| Sbjct 3155 CAAATCTAGAATA 3143 >seq16437 Length=3918 Score = 114 bits (126), Expect = 2e-22 Identities = 212/313 (68%), Gaps = 51/313 (16%) Strand=Plus/Plus Query 531 TCGGGCTCATTGAATTCCAAACACCAAGACGAAACCAACGAGCTCTCGTTCATCTCGATA 590 || ||||||| | |||| || | ||||||| |||||||| ||||||||||||| Sbjct 951 TCAGGCTCATCGTGTTCCTCTCATCGAGACGAATTCAACGAGCCTTCGTTCATCTCGA-- 1008 Query 591 TTCCAACCGGAAGTACCTGAGCGACAATGTGGCGGGTGTGGCAGCCATCTCCAGTCTTAC 650 |||| ||| | ||| || |||| ||| | || ||||||| || Sbjct 1009 ----------AAGT--CTGCG------TGTAGCAGGTG-GGCGGGTATATCCAGTCCAAC 1049 Query 651 CGCAGCTTATATTCATGCTAT-ATATATTCCTATAGTCTTTACTGGCTTTACCTATAGCG 709 | ||||||||||| || |||| ||| || ||||| | |||| || || | ||| Sbjct 1050 CTCAGCTTATATT-ATACTATTATAATTTACTATACT-TTTA-TGACTACGCTTATTATA 1106 Query 710 ATATATTTCTAGCTCTATAGCTAGTCCTATATGCTATTTATACCTCTTTAAGATACATAA 769 ||| ||||||| || |||||||||| |||| | ||||||||||||||||||| Sbjct 1107 ATACATTTCTAACTATATAGCTAGTTCTATTTCCTATTTATACCTCTTTAAG-------- 1158 Query 770 ACTTATTTAAAGAGTTATATATAAAATACCAAAGCCACGAAAAATCGTATGGAGCTATAG 829 ||||||| |||| |||||| | ||||||||| ||||||||| Sbjct 1159 ------------------ATATAAATAACCACAGCCACAAGAAATCGTATAGAGCTATAG 1200 Query 830 CAAATCTAGGATA 842 ||||||||| ||| Sbjct 1201 CAAATCTAGAATA 1213 >seq1896 Length=105120 Score = 114 bits (126), Expect = 2e-22 Identities = 123/162 (76%), Gaps = 12/162 (7%) Strand=Plus/Plus Query 690 TACTGGCTTTACCTATAGCGATATATTTCTAGCTCTATAGCTAGTCCTATATGC-TATTT 748 || |||| ||| ||||||| || |||| ||| ||| |||||||| ||||| | ||||| Sbjct 45618 TAATGGCATTAACTATAGCAATTTATTATTAGGTCTCTAGCTAGTGCTATAACCCTATTT 45677 Query 749 ATACCTCTTTAAGATACA----TAAACTTATTTAAAGAGTTATATATAAAATACCAAAGC 804 || || ||| |||||| | |||| ||||||||| |||||||||||| ||| Sbjct 45678 ATTCCCCTTCAAGATATAAGTATAAAATTATTTAAAC-------TATAAAATACCACAGC 45730 Query 805 CACGAAAAATCGTATGGAGCTATAGCAAATCTAGGATATAAA 846 ||| | |||| ||| |||||||| |||||||||||| ||| Sbjct 45731 CACAAGAAATTATATAAAGCTATAGTAAATCTAGGATAGAAA 45772 >seq7981 Length=21338 Score = 100 bits (110), Expect = 4e-18 Identities = 113/150 (75%), Gaps = 10/150 (7%) Strand=Plus/Plus Query 653 CAGCTTATATTCATGCTATATATATTCCTATAGTCTTTACTGGCTTTACCTATAGCGATA 712 ||| ||||||| || | |||||||||||||| |||| |||| ||||| ||| ||| Sbjct 10199 CAGTTTATATTTATACACCATATATTCCTATAGCTTTTAACGGCTATACCTTTAGTTATA 10258 Query 713 TATTTCTAGC----TCTATAGCTAGTCCTATATGCTATTTATACCTCTTTAAGATACATA 768 |||||||| ||||||||| | | |||| |||||| || ||||||| |||| || Sbjct 10259 CCTTTCTAGCCACACCTATAGCTAATACCATATCCTATTTCTATCTCTTTAGGATATTTA 10318 Query 769 AACT----TATTTAAAGAGTTA--TATATA 792 |||| |||| ||||||||| |||||| Sbjct 10319 AACTTGGGTATTAAAAGAGTTAGGTATATA 10348 >seq6263 Length=31128 Score = 93.3 bits (102), Expect = 6e-16 Identities = 97/127 (76%), Gaps = 4/127 (3%) Strand=Plus/Minus Query 639 CTCCAGTCTTACCGCAGCTTATATTCATGCTATATATATTCCTATAGTCTTTA----CTG 694 || |||||| | | ||||||||||| || ||||||||| ||||| |||| || Sbjct 12786 CTGCAGTCTCATCACAGCTTATATTTATATACTATATATTCGTATAGCTTTTAACGGCTA 12727 Query 695 GCTTTACCTATAGCGATATATTTCTAGCTCTATAGCTAGTCCTATATGCTATTTATACCT 754 || ||||| |||| ||| |||||||| |||||||| | | |||| ||||||||| || Sbjct 12726 CCTATACCTTTAGCTATACCTTTCTAGCCATATAGCTAATACCATATCCTATTTATATCT 12667 Query 755 CTTTAAG 761 ||||||| Sbjct 12666 CTTTAAG 12660 >seq171 Length=184467 Score = 89.7 bits (98), Expect = 7e-15 Identities = 116/157 (74%), Gaps = 14/157 (9%) Strand=Plus/Minus Query 699 TACCTATAGCGATATATTTCTAGCTCTATA---GCTAGTCCTATATGC-TATTTATACCT 754 |||||||||| ||||||| | || |||||| | | || ||||| | ||||||||||| Sbjct 158932 TACCTATAGCAATATATTACCAGTTCTATAATAGTTGGTGCTATAACCCTATTTATACCT 158873 Query 755 CTTTAAGATACA--TAAACTTATTTAAAGAGTTATATATAAAATACCAAAGCCACGAAAA 812 ||| | |||| | || || | |||| | | ||||||||||| |||||| | || Sbjct 158872 CTTCAGGATATAAGTATACAATTATAAAAACT-----ATAAAATACCACAGCCACAAGAA 158818 Query 813 ATC---GTATGGAGCTATAGCAAATCTAGGATATAAA 846 ||| |||| ||||||| |||||||||||| ||| Sbjct 158817 ATCATATTATGAAGCTATATTAAATCTAGGATAGAAA 158781 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7278004292650