Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Operophtera_20brumata_20[genbank_20GCA_5F001266575.1_202015-08-11]
25,801 sequences; 638,207,720 total letters
Query= NC_008934.1
Length=2309
Score E
Sequences producing significant alignments: (Bits) Value
seq6422 203 5e-49
seq9855 194 2e-46
seq2447 168 1e-38
seq16437 114 2e-22
seq1896 114 2e-22
seq7981 100 4e-18
seq6263 93.3 6e-16
seq171 89.7 7e-15
>seq6422
Length=30189
Score = 203 bits (224), Expect = 5e-49
Identities = 234/308 (76%), Gaps = 8/308 (3%)
Strand=Plus/Plus
Query 534 GGCTCATTGAATTCCAAACACCAAGACGAAACCAACGAGCTCTCGTTCATCTCGATATTC 593
||||||| | ||||| | ||||||||| |||||| | | | || | | ||
Sbjct 20924 GGCTCATCGGATTCCTCGCGTCAAGACGAATCCAACGGGTCCATGGTCGACCAAAAATGG 20983
Query 594 CAACCGGAAGTACCTGAGCGACAAT--GTGGCGGGTGTGGCAGCCATCTCCAGTCTTACC 651
| || |||||| || || | ||| |||||||||||||||||| || ||| |||
Sbjct 20984 CTACTGGAAGTCCCCGATTGGAAATTGGTGGCGGGTGTGGCAGCCCAGATCA-TCTCACC 21042
Query 652 GCAGCTTATATTCATGCTATATATATTCCTATAGTCTTTACTGGCTTTACC-TATAGCGA 710
|||||||| | || |||||| | || |||| |||| ||||| | || |||||| |
Sbjct 21043 TCAGCTTATGCT-ATACTATATTT--TCATATAACTTTTATTGGCTATGCCCTATAGCAA 21099
Query 711 TATATTTCTAGCTCTATAGCTAGTCCTATATGCTATTTATACCTCTTTAAGATACATAAA 770
|| |||||||||| | ||||| | ||||||||||||||||||||||||||||| |||||
Sbjct 21100 TACATTTCTAGCTGT-TAGCTTATACTATATGCTATTTATACCTCTTTAAGATATATAAA 21158
Query 771 CTTATTTAAAGAGTTATATATAAAATACCAAAGCCACGAAAAATCGTATGGAGCTATAGC 830
||||| |||||||||| ||||||||||||| ||||||| |||| ||| ||||||| |
Sbjct 21159 CTTATGTAAAGAGTTACATATAAAATACCACAGCCACGGGAAATAATATAGAGCTATGGT 21218
Query 831 AAATCTAG 838
|| |||||
Sbjct 21219 AAGTCTAG 21226
>seq9855
Length=15086
Score = 194 bits (214), Expect = 2e-46
Identities = 232/308 (75%), Gaps = 8/308 (3%)
Strand=Plus/Plus
Query 534 GGCTCATTGAATTCCAAACACCAAGACGAAACCAACGAGCTCTCGTTCATCTCGATATTC 593
||||||| | ||||| | ||||||||| |||||| | | | || | | ||
Sbjct 2940 GGCTCATCGGATTCCTCGCGTCAAGACGAATCCAACGGGTCCATGGTCGACCAAAAATGG 2999
Query 594 CAACCGGAAGTACCTGAGCGACAAT--GTGGCGGGTGTGGCAGCCATCTCCAGTCTTACC 651
| || |||||| || || | ||| |||||||||||||||||| || || |||
Sbjct 3000 CTACTGGAAGTCCCCGATTGGAAATTGGTGGCGGGTGTGGCAGCCCAGATCA-TCACACC 3058
Query 652 GCAGCTTATATTCATGCTATATATATTCCTATAGTCTTTACTGGCTTTACC-TATAGCGA 710
|||||||| | || |||||| | || |||| |||| ||||| | || |||||| |
Sbjct 3059 TCAGCTTATGCT-ATACTATATTT--TCATATAACTTTTATTGGCTATGCCCTATAGCAA 3115
Query 711 TATATTTCTAGCTCTATAGCTAGTCCTATATGCTATTTATACCTCTTTAAGATACATAAA 770
|| |||||||||| | ||||| ||||||||||||||||||||||||||||| |||||
Sbjct 3116 TACATTTCTAGCTGT-TAGCTTACACTATATGCTATTTATACCTCTTTAAGATATATAAA 3174
Query 771 CTTATTTAAAGAGTTATATATAAAATACCAAAGCCACGAAAAATCGTATGGAGCTATAGC 830
||||| |||||||||| ||||||||||||| ||||||| |||| ||| ||||||| |
Sbjct 3175 CTTATGTAAAGAGTTACATATAAAATACCACAGCCACGGGAAATAATATAGAGCTATGGT 3234
Query 831 AAATCTAG 838
|| |||||
Sbjct 3235 AAGTCTAG 3242
>seq2447
Length=64305
Score = 168 bits (186), Expect = 1e-38
Identities = 117/133 (88%), Gaps = 0/133 (0%)
Strand=Plus/Minus
Query 710 ATATATTTCTAGCTCTATAGCTAGTCCTATATGCTATTTATACCTCTTTAAGATACATAA 769
||| ||||||| || |||||||||| |||| | |||||||||||||||||||||| ||||
Sbjct 3275 ATACATTTCTAACTATATAGCTAGTTCTATTTCCTATTTATACCTCTTTAAGATATATAA 3216
Query 770 ACTTATTTAAAGAGTTATATATAAAATACCAAAGCCACGAAAAATCGTATGGAGCTATAG 829
|||||||||||||||| ||||||| |||| |||||| | ||||||||| |||||||||
Sbjct 3215 ACTTATTTAAAGAGTTTGATATAAATAACCACAGCCACAAGAAATCGTATAGAGCTATAG 3156
Query 830 CAAATCTAGGATA 842
||||||||| |||
Sbjct 3155 CAAATCTAGAATA 3143
>seq16437
Length=3918
Score = 114 bits (126), Expect = 2e-22
Identities = 212/313 (68%), Gaps = 51/313 (16%)
Strand=Plus/Plus
Query 531 TCGGGCTCATTGAATTCCAAACACCAAGACGAAACCAACGAGCTCTCGTTCATCTCGATA 590
|| ||||||| | |||| || | ||||||| |||||||| |||||||||||||
Sbjct 951 TCAGGCTCATCGTGTTCCTCTCATCGAGACGAATTCAACGAGCCTTCGTTCATCTCGA-- 1008
Query 591 TTCCAACCGGAAGTACCTGAGCGACAATGTGGCGGGTGTGGCAGCCATCTCCAGTCTTAC 650
|||| ||| | ||| || |||| ||| | || ||||||| ||
Sbjct 1009 ----------AAGT--CTGCG------TGTAGCAGGTG-GGCGGGTATATCCAGTCCAAC 1049
Query 651 CGCAGCTTATATTCATGCTAT-ATATATTCCTATAGTCTTTACTGGCTTTACCTATAGCG 709
| ||||||||||| || |||| ||| || ||||| | |||| || || | |||
Sbjct 1050 CTCAGCTTATATT-ATACTATTATAATTTACTATACT-TTTA-TGACTACGCTTATTATA 1106
Query 710 ATATATTTCTAGCTCTATAGCTAGTCCTATATGCTATTTATACCTCTTTAAGATACATAA 769
||| ||||||| || |||||||||| |||| | |||||||||||||||||||
Sbjct 1107 ATACATTTCTAACTATATAGCTAGTTCTATTTCCTATTTATACCTCTTTAAG-------- 1158
Query 770 ACTTATTTAAAGAGTTATATATAAAATACCAAAGCCACGAAAAATCGTATGGAGCTATAG 829
||||||| |||| |||||| | ||||||||| |||||||||
Sbjct 1159 ------------------ATATAAATAACCACAGCCACAAGAAATCGTATAGAGCTATAG 1200
Query 830 CAAATCTAGGATA 842
||||||||| |||
Sbjct 1201 CAAATCTAGAATA 1213
>seq1896
Length=105120
Score = 114 bits (126), Expect = 2e-22
Identities = 123/162 (76%), Gaps = 12/162 (7%)
Strand=Plus/Plus
Query 690 TACTGGCTTTACCTATAGCGATATATTTCTAGCTCTATAGCTAGTCCTATATGC-TATTT 748
|| |||| ||| ||||||| || |||| ||| ||| |||||||| ||||| | |||||
Sbjct 45618 TAATGGCATTAACTATAGCAATTTATTATTAGGTCTCTAGCTAGTGCTATAACCCTATTT 45677
Query 749 ATACCTCTTTAAGATACA----TAAACTTATTTAAAGAGTTATATATAAAATACCAAAGC 804
|| || ||| |||||| | |||| ||||||||| |||||||||||| |||
Sbjct 45678 ATTCCCCTTCAAGATATAAGTATAAAATTATTTAAAC-------TATAAAATACCACAGC 45730
Query 805 CACGAAAAATCGTATGGAGCTATAGCAAATCTAGGATATAAA 846
||| | |||| ||| |||||||| |||||||||||| |||
Sbjct 45731 CACAAGAAATTATATAAAGCTATAGTAAATCTAGGATAGAAA 45772
>seq7981
Length=21338
Score = 100 bits (110), Expect = 4e-18
Identities = 113/150 (75%), Gaps = 10/150 (7%)
Strand=Plus/Plus
Query 653 CAGCTTATATTCATGCTATATATATTCCTATAGTCTTTACTGGCTTTACCTATAGCGATA 712
||| ||||||| || | |||||||||||||| |||| |||| ||||| ||| |||
Sbjct 10199 CAGTTTATATTTATACACCATATATTCCTATAGCTTTTAACGGCTATACCTTTAGTTATA 10258
Query 713 TATTTCTAGC----TCTATAGCTAGTCCTATATGCTATTTATACCTCTTTAAGATACATA 768
|||||||| ||||||||| | | |||| |||||| || ||||||| |||| ||
Sbjct 10259 CCTTTCTAGCCACACCTATAGCTAATACCATATCCTATTTCTATCTCTTTAGGATATTTA 10318
Query 769 AACT----TATTTAAAGAGTTA--TATATA 792
|||| |||| ||||||||| ||||||
Sbjct 10319 AACTTGGGTATTAAAAGAGTTAGGTATATA 10348
>seq6263
Length=31128
Score = 93.3 bits (102), Expect = 6e-16
Identities = 97/127 (76%), Gaps = 4/127 (3%)
Strand=Plus/Minus
Query 639 CTCCAGTCTTACCGCAGCTTATATTCATGCTATATATATTCCTATAGTCTTTA----CTG 694
|| |||||| | | ||||||||||| || ||||||||| ||||| |||| ||
Sbjct 12786 CTGCAGTCTCATCACAGCTTATATTTATATACTATATATTCGTATAGCTTTTAACGGCTA 12727
Query 695 GCTTTACCTATAGCGATATATTTCTAGCTCTATAGCTAGTCCTATATGCTATTTATACCT 754
|| ||||| |||| ||| |||||||| |||||||| | | |||| ||||||||| ||
Sbjct 12726 CCTATACCTTTAGCTATACCTTTCTAGCCATATAGCTAATACCATATCCTATTTATATCT 12667
Query 755 CTTTAAG 761
|||||||
Sbjct 12666 CTTTAAG 12660
>seq171
Length=184467
Score = 89.7 bits (98), Expect = 7e-15
Identities = 116/157 (74%), Gaps = 14/157 (9%)
Strand=Plus/Minus
Query 699 TACCTATAGCGATATATTTCTAGCTCTATA---GCTAGTCCTATATGC-TATTTATACCT 754
|||||||||| ||||||| | || |||||| | | || ||||| | |||||||||||
Sbjct 158932 TACCTATAGCAATATATTACCAGTTCTATAATAGTTGGTGCTATAACCCTATTTATACCT 158873
Query 755 CTTTAAGATACA--TAAACTTATTTAAAGAGTTATATATAAAATACCAAAGCCACGAAAA 812
||| | |||| | || || | |||| | | ||||||||||| |||||| | ||
Sbjct 158872 CTTCAGGATATAAGTATACAATTATAAAAACT-----ATAAAATACCACAGCCACAAGAA 158818
Query 813 ATC---GTATGGAGCTATAGCAAATCTAGGATATAAA 846
||| |||| ||||||| |||||||||||| |||
Sbjct 158817 ATCATATTATGAAGCTATATTAAATCTAGGATAGAAA 158781
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 7278004292650
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |