Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Operophtera_20brumata_20[genbank_20GCA_5F001266575.1_202015-08-11] 25,801 sequences; 638,207,720 total letters Query= NC_008935.1 Length=2502 Score E Sequences producing significant alignments: (Bits) Value seq2447 131 3e-27 seq9855 105 1e-19 seq6422 105 1e-19 >seq2447 Length=64305 Score = 131 bits (144), Expect = 3e-27 Identities = 131/163 (80%), Gaps = 8/163 (5%) Strand=Plus/Minus Query 187 GCTTATTATAATATATTCCTGCTTACATATAGCTAGTCTTATTTGCTACTTATACCTCTT 246 ||||||||||||| ||| || || |||||||||| ||||| ||| ||||||||||| Sbjct 3285 GCTTATTATAATACATTTCTAACTA--TATAGCTAGTTCTATTTCCTATTTATACCTCTT 3228 Query 247 TAAGATAAATAATATTATTTAAAGAGTTATATATAAAATACCACAGCCACGAAAGAATAC 306 ||||||| |||| |||||||||||||| ||||||| ||||||||||| ||||| | Sbjct 3227 TAAGATATATAAACTTATTTAAAGAGTTTGATATAAATAACCACAGCCAC--AAGAA-AT 3171 Query 307 CGTA-AGATCTATAGTTAATATAGGATTAGA-ATGGCTCGCCA 347 |||| ||| |||||| ||| || || |||| |||| ||||| Sbjct 3170 CGTATAGAGCTATAGCAAATCTA-GAATAGAGATGGTCCGCCA 3129 >seq9855 Length=15086 Score = 105 bits (116), Expect = 1e-19 Identities = 93/115 (81%), Gaps = 6/115 (5%) Strand=Plus/Plus Query 226 TATTTGCTACTTATACCTCTTTAAGATAAATAATATTATTTAAAGAGTTATATATAAAAT 285 ||| ||||| |||||||||||||||||| |||| |||| |||||||||| ||||||||| Sbjct 3141 TATATGCTATTTATACCTCTTTAAGATATATAAACTTATGTAAAGAGTTACATATAAAAT 3200 Query 286 ACCACAGCCAC--GAAAGAATACCGTAAGATCTATAGTTAATATAGGATTAGAAT 338 ||||||||||| |||| |||| ||| |||| || | | ||| | |||||| Sbjct 3201 ACCACAGCCACGGGAAATAATA----TAGAGCTATGGTAAGTCTAGTACTAGAAT 3251 >seq6422 Length=30189 Score = 105 bits (116), Expect = 1e-19 Identities = 93/115 (81%), Gaps = 6/115 (5%) Strand=Plus/Plus Query 226 TATTTGCTACTTATACCTCTTTAAGATAAATAATATTATTTAAAGAGTTATATATAAAAT 285 ||| ||||| |||||||||||||||||| |||| |||| |||||||||| ||||||||| Sbjct 21125 TATATGCTATTTATACCTCTTTAAGATATATAAACTTATGTAAAGAGTTACATATAAAAT 21184 Query 286 ACCACAGCCAC--GAAAGAATACCGTAAGATCTATAGTTAATATAGGATTAGAAT 338 ||||||||||| |||| |||| ||| |||| || | | ||| | |||||| Sbjct 21185 ACCACAGCCACGGGAAATAATA----TAGAGCTATGGTAAGTCTAGTACTAGAAT 21235 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7895434986488