Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Operophtera_20brumata_20[genbank_20GCA_5F001266575.1_202015-08-11] 25,801 sequences; 638,207,720 total letters Query= NC_008936.1 Length=2588 Score E Sequences producing significant alignments: (Bits) Value seq9855 168 1e-38 seq6422 161 2e-36 seq2447 116 6e-23 seq2536 78.8 2e-11 >seq9855 Length=15086 Score = 168 bits (186), Expect = 1e-38 Identities = 209/275 (76%), Gaps = 11/275 (4%) Strand=Plus/Plus Query 12 GGAAGACTTCGATTTGAAAGTG-TGGCGGGTGTGGCGGCCAATTCCTATCCCACCTTACC 70 ||||| | ||||| |||| || ||||||||||||| ||| | | ||| ||||| | | Sbjct 3005 GGAAGTCCCCGATTGGAAATTGGTGGCGGGTGTGGCAGCCCAGATC-ATCACACCTCAGC 3063 Query 71 TTATATTTATAATGGATATTTTTATTTAGTCTTTACTGGCTAT-ACTTATAGCAATACAC 129 |||| |||| | ||||||| || || |||| ||||||| | |||||||||||| Sbjct 3064 TTAT-GCTATACT--ATATTTTCATATAACTTTTATTGGCTATGCCCTATAGCAATACAT 3120 Query 130 ACTTACCTATATAGCTATCAttatatgccatatatacctctttaagaaatataatattat 189 || || | ||||| || ||||||| || ||||||||||||||| |||||| |||| Sbjct 3121 TTCTAGCTGT-TAGCTTACACTATATGCTATTTATACCTCTTTAAGATATATAAACTTAT 3179 Query 190 tgaaagagttatatataaaataCCACAGCCACAGAAAATAATATGAAGCTATAGATATTC 249 ||||||||| |||||||||||||||||||| | ||||||||| |||||| | | || Sbjct 3180 GTAAAGAGTTACATATAAAATACCACAGCCACGGGAAATAATATAGAGCTATGGTAAGTC 3239 Query 250 TAGAA--TGAATGTGGTCAGCCATAGTCGCCACAT 282 ||| | |||| ||| |||||| | ||||||| Sbjct 3240 TAGTACTAGAAT-TGG-CAGCCACGTTTGCCACAT 3272 >seq6422 Length=30189 Score = 161 bits (178), Expect = 2e-36 Identities = 186/243 (77%), Gaps = 7/243 (3%) Strand=Plus/Plus Query 12 GGAAGACTTCGATTTGAAAGTG-TGGCGGGTGTGGCGGCCAATTCCTATCCCACCTTACC 70 ||||| | ||||| |||| || ||||||||||||| ||| | | ||| ||||| | | Sbjct 20989 GGAAGTCCCCGATTGGAAATTGGTGGCGGGTGTGGCAGCCCAGATC-ATCTCACCTCAGC 21047 Query 71 TTATATTTATAATGGATATTTTTATTTAGTCTTTACTGGCTAT-ACTTATAGCAATACAC 129 |||| |||| | ||||||| || || |||| ||||||| | |||||||||||| Sbjct 21048 TTAT-GCTATACT--ATATTTTCATATAACTTTTATTGGCTATGCCCTATAGCAATACAT 21104 Query 130 ACTTACCTATATAGCTATCAttatatgccatatatacctctttaagaaatataatattat 189 || || | ||||| | ||||||| || ||||||||||||||| |||||| |||| Sbjct 21105 TTCTAGCTGT-TAGCTTATACTATATGCTATTTATACCTCTTTAAGATATATAAACTTAT 21163 Query 190 tgaaagagttatatataaaataCCACAGCCACAGAAAATAATATGAAGCTATAGATATTC 249 ||||||||| |||||||||||||||||||| | ||||||||| |||||| | | || Sbjct 21164 GTAAAGAGTTACATATAAAATACCACAGCCACGGGAAATAATATAGAGCTATGGTAAGTC 21223 Query 250 TAG 252 ||| Sbjct 21224 TAG 21226 >seq2447 Length=64305 Score = 116 bits (128), Expect = 6e-23 Identities = 155/212 (73%), Gaps = 4/212 (2%) Strand=Plus/Minus Query 107 TGGCTATACTTATAGCAATACACACTTACCTATATAGCTATCAttatatgccatatatac 166 || ||| ||||| |||||| || ||||||||||| ||| | | || ||||| Sbjct 3292 TGACTACGCTTATTATAATACATTTCTAACTATATAGCTAGTTCTATTTCCTATTTATAC 3233 Query 167 ctctttaagaaatataatattattgaaagagttatatataaaataCCACAGCCACAGAAA 226 |||||||||| |||||| ||||| |||||||| ||||||| |||||||||||| || Sbjct 3232 CTCTTTAAGATATATAAACTTATTTAAAGAGTTTGATATAAATAACCACAGCCACAAGAA 3173 Query 227 ATAATATGAAGCTATAGATATTCTAGAATGAATGTGGTCAGCCA--TAGTCGCCACATTC 284 || ||| |||||||| | |||||||| | ||||| |||| | | | ||| | Sbjct 3172 ATCGTATAGAGCTATAGCAAATCTAGAATAGAGATGGTCCGCCACCCAACCACAACACT- 3114 Query 285 AGTGTTCGAATACTTTCTGTGGCAATTCTGAG 316 | | ||| || |||||| ||| ||||||||| Sbjct 3113 AATTTTC-AACACTTTCCGTGAGAATTCTGAG 3083 >seq2536 Length=66406 Score = 78.8 bits (86), Expect = 2e-11 Identities = 60/71 (85%), Gaps = 0/71 (0%) Strand=Plus/Minus Query 751 ACATATGTCAATGGCGCAAAGGGTACCCGTACGACCGACTCCTGCATCGCCATGCACGAC 810 |||||||| || ||||||| |||| ||| ||||| || ||||||| |||||||||||| Sbjct 62539 ACATATGTACATTGCGCAAAAAGTACACGTGCGACCAACACCTGCATTGCCATGCACGAC 62480 Query 811 GATTGGACCCA 821 |||||||||| Sbjct 62479 AATTGGACCCA 62469 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8170559544364