Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Operophtera_20brumata_20[genbank_20GCA_5F001266575.1_202015-08-11]
25,801 sequences; 638,207,720 total letters
Query= NC_008937.1
Length=2759
Score E
Sequences producing significant alignments: (Bits) Value
seq9855 149 1e-32
seq6422 145 1e-31
seq2447 127 4e-26
seq1896 89.7 9e-15
seq1668 77.0 6e-11
>seq9855
Length=15086
Score = 149 bits (164), Expect = 1e-32
Identities = 158/201 (79%), Gaps = 7/201 (3%)
Strand=Plus/Plus
Query 1101 ACCGCAGCCTATACTTATAACTTATTTTTCTATAGCCTTTATTGGCTATATCAC-TAGTA 1159
||| |||| ||| || ||| |||||| |||| | |||||||||||| | ||| |
Sbjct 3056 ACCTCAGCTTATGCT-ATACTATATTTTCATATAACTTTTATTGGCTATGCCCTATAGCA 3114
Query 1160 ATACATTCCTACTCATATAGCTAGCGTTATATTCTATATTTATAC-TCTTTAAGATAAAT 1218
||||||| ||| | ||||| | ||||| |||| |||||| ||||||||||| ||
Sbjct 3115 ATACATTTCTAGCTGT-TAGCTTACACTATATGCTAT--TTATACCTCTTTAAGATATAT 3171
Query 1219 AATATTATTTAAAGAGTTACCTATAAAATACCACAGCCACGAGAAATAATATGAAGCTAT 1278
|| |||| ||||||||||| |||||||||||||||||||| |||||||||| ||||||
Sbjct 3172 AAACTTATGTAAAGAGTTACATATAAAATACCACAGCCACGGGAAATAATATAGAGCTAT 3231
Query 1279 GGAAAATCTAG-AATAGAATT 1298
|| || ||||| | |||||||
Sbjct 3232 GGTAAGTCTAGTACTAGAATT 3252
>seq6422
Length=30189
Score = 145 bits (160), Expect = 1e-31
Identities = 160/205 (78%), Gaps = 15/205 (7%)
Strand=Plus/Plus
Query 1101 ACCGCAGCCTATACTTATAACTTATTTTTCTATAGCCTTTATTGGCTATATCAC-TAGTA 1159
||| |||| ||| || ||| |||||| |||| | |||||||||||| | ||| |
Sbjct 21040 ACCTCAGCTTATGCT-ATACTATATTTTCATATAACTTTTATTGGCTATGCCCTATAGCA 21098
Query 1160 ATACATTCCTA-CTCATATAGCTAGCGTTATATTCTAT---ATTTATAC-TCTTTAAGAT 1214
||||||| ||| || | |||| ||||| | ||| |||||||| ||||||||||
Sbjct 21099 ATACATTTCTAGCT------GTTAGC-TTATACTATATGCTATTTATACCTCTTTAAGAT 21151
Query 1215 AAATAATATTATTTAAAGAGTTACCTATAAAATACCACAGCCACGAGAAATAATATGAAG 1274
| |||| |||| ||||||||||| |||||||||||||||||||| |||||||||| ||
Sbjct 21152 ATATAAACTTATGTAAAGAGTTACATATAAAATACCACAGCCACGGGAAATAATATAGAG 21211
Query 1275 CTATGGAAAATCTAG-AATAGAATT 1298
|||||| || ||||| | |||||||
Sbjct 21212 CTATGGTAAGTCTAGTACTAGAATT 21236
>seq2447
Length=64305
Score = 127 bits (140), Expect = 4e-26
Identities = 113/139 (81%), Gaps = 3/139 (2%)
Strand=Plus/Minus
Query 1158 TAATACATTCCTACTCATATAGCTAGCGTTATATTCTATATTTATAC-TCTTTAAGATAA 1216
||||||||| ||| |||||||||| || |||| ||||||||| |||||||||||
Sbjct 3277 TAATACATTTCTAACTATATAGCTAG--TTCTATTTCCTATTTATACCTCTTTAAGATAT 3220
Query 1217 ATAATATTATTTAAAGAGTTACCTATAAAATACCACAGCCACGAGAAATAATATGAAGCT 1276
|||| |||||||||||||| |||||| ||||||||||| |||||| ||| ||||
Sbjct 3219 ATAAACTTATTTAAAGAGTTTGATATAAATAACCACAGCCACAAGAAATCGTATAGAGCT 3160
Query 1277 ATGGAAAATCTAGAATAGA 1295
|| | ||||||||||||||
Sbjct 3159 ATAGCAAATCTAGAATAGA 3141
>seq1896
Length=105120
Score = 89.7 bits (98), Expect = 9e-15
Identities = 96/125 (77%), Gaps = 13/125 (10%)
Strand=Plus/Plus
Query 1177 TAGCTAGCGTTATATTCTATATTTATACTCTTT-AAGATAAA----TAATATTATTTAAA 1231
||||||| | |||| | ||||||| | | || |||||| | ||| ||||||||||
Sbjct 45655 TAGCTAGTGCTATAACCC-TATTTATTCCCCTTCAAGATATAAGTATAAAATTATTTAAA 45713
Query 1232 GAGTTACCTATAAAATACCACAGCCACGAGAAATAATATGAAGCTATGGAAAATCTAGAA 1291
|||||||||||||||||||| |||||| |||| ||||||| | |||||||| |
Sbjct 45714 -------CTATAAAATACCACAGCCACAAGAAATTATATAAAGCTATAGTAAATCTAGGA 45766
Query 1292 TAGAA 1296
|||||
Sbjct 45767 TAGAA 45771
>seq1668
Length=82418
Score = 77.0 bits (84), Expect = 6e-11
Identities = 75/97 (77%), Gaps = 11/97 (11%)
Strand=Plus/Minus
Query 1204 CTCTTTAAGATAAA----TAATATTATTTAAAGAGTTACCTATAAAATACCACAGCCACG 1259
||||| |||||| | ||| |||||| ||| ||||||||||||||| ||||
Sbjct 67447 CTCTTCAAGATATAAGTATAAAATTATTAAAA-------CTATAAAATACCACACCCACA 67395
Query 1260 AGAAATAATATGAAGCTATGGAAAATCTAGAATAGAA 1296
|||||| |||| ||||||| | |||||||| ||||||
Sbjct 67394 AGAAATCATATAAAGCTATAGTAAATCTAGGATAGAA 67358
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 8717609537350
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |