Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Operophtera_20brumata_20[genbank_20GCA_5F001266575.1_202015-08-11] 25,801 sequences; 638,207,720 total letters Query= NC_008937.1 Length=2759 Score E Sequences producing significant alignments: (Bits) Value seq9855 149 1e-32 seq6422 145 1e-31 seq2447 127 4e-26 seq1896 89.7 9e-15 seq1668 77.0 6e-11 >seq9855 Length=15086 Score = 149 bits (164), Expect = 1e-32 Identities = 158/201 (79%), Gaps = 7/201 (3%) Strand=Plus/Plus Query 1101 ACCGCAGCCTATACTTATAACTTATTTTTCTATAGCCTTTATTGGCTATATCAC-TAGTA 1159 ||| |||| ||| || ||| |||||| |||| | |||||||||||| | ||| | Sbjct 3056 ACCTCAGCTTATGCT-ATACTATATTTTCATATAACTTTTATTGGCTATGCCCTATAGCA 3114 Query 1160 ATACATTCCTACTCATATAGCTAGCGTTATATTCTATATTTATAC-TCTTTAAGATAAAT 1218 ||||||| ||| | ||||| | ||||| |||| |||||| ||||||||||| || Sbjct 3115 ATACATTTCTAGCTGT-TAGCTTACACTATATGCTAT--TTATACCTCTTTAAGATATAT 3171 Query 1219 AATATTATTTAAAGAGTTACCTATAAAATACCACAGCCACGAGAAATAATATGAAGCTAT 1278 || |||| ||||||||||| |||||||||||||||||||| |||||||||| |||||| Sbjct 3172 AAACTTATGTAAAGAGTTACATATAAAATACCACAGCCACGGGAAATAATATAGAGCTAT 3231 Query 1279 GGAAAATCTAG-AATAGAATT 1298 || || ||||| | ||||||| Sbjct 3232 GGTAAGTCTAGTACTAGAATT 3252 >seq6422 Length=30189 Score = 145 bits (160), Expect = 1e-31 Identities = 160/205 (78%), Gaps = 15/205 (7%) Strand=Plus/Plus Query 1101 ACCGCAGCCTATACTTATAACTTATTTTTCTATAGCCTTTATTGGCTATATCAC-TAGTA 1159 ||| |||| ||| || ||| |||||| |||| | |||||||||||| | ||| | Sbjct 21040 ACCTCAGCTTATGCT-ATACTATATTTTCATATAACTTTTATTGGCTATGCCCTATAGCA 21098 Query 1160 ATACATTCCTA-CTCATATAGCTAGCGTTATATTCTAT---ATTTATAC-TCTTTAAGAT 1214 ||||||| ||| || | |||| ||||| | ||| |||||||| |||||||||| Sbjct 21099 ATACATTTCTAGCT------GTTAGC-TTATACTATATGCTATTTATACCTCTTTAAGAT 21151 Query 1215 AAATAATATTATTTAAAGAGTTACCTATAAAATACCACAGCCACGAGAAATAATATGAAG 1274 | |||| |||| ||||||||||| |||||||||||||||||||| |||||||||| || Sbjct 21152 ATATAAACTTATGTAAAGAGTTACATATAAAATACCACAGCCACGGGAAATAATATAGAG 21211 Query 1275 CTATGGAAAATCTAG-AATAGAATT 1298 |||||| || ||||| | ||||||| Sbjct 21212 CTATGGTAAGTCTAGTACTAGAATT 21236 >seq2447 Length=64305 Score = 127 bits (140), Expect = 4e-26 Identities = 113/139 (81%), Gaps = 3/139 (2%) Strand=Plus/Minus Query 1158 TAATACATTCCTACTCATATAGCTAGCGTTATATTCTATATTTATAC-TCTTTAAGATAA 1216 ||||||||| ||| |||||||||| || |||| ||||||||| ||||||||||| Sbjct 3277 TAATACATTTCTAACTATATAGCTAG--TTCTATTTCCTATTTATACCTCTTTAAGATAT 3220 Query 1217 ATAATATTATTTAAAGAGTTACCTATAAAATACCACAGCCACGAGAAATAATATGAAGCT 1276 |||| |||||||||||||| |||||| ||||||||||| |||||| ||| |||| Sbjct 3219 ATAAACTTATTTAAAGAGTTTGATATAAATAACCACAGCCACAAGAAATCGTATAGAGCT 3160 Query 1277 ATGGAAAATCTAGAATAGA 1295 || | |||||||||||||| Sbjct 3159 ATAGCAAATCTAGAATAGA 3141 >seq1896 Length=105120 Score = 89.7 bits (98), Expect = 9e-15 Identities = 96/125 (77%), Gaps = 13/125 (10%) Strand=Plus/Plus Query 1177 TAGCTAGCGTTATATTCTATATTTATACTCTTT-AAGATAAA----TAATATTATTTAAA 1231 ||||||| | |||| | ||||||| | | || |||||| | ||| |||||||||| Sbjct 45655 TAGCTAGTGCTATAACCC-TATTTATTCCCCTTCAAGATATAAGTATAAAATTATTTAAA 45713 Query 1232 GAGTTACCTATAAAATACCACAGCCACGAGAAATAATATGAAGCTATGGAAAATCTAGAA 1291 |||||||||||||||||||| |||||| |||| ||||||| | |||||||| | Sbjct 45714 -------CTATAAAATACCACAGCCACAAGAAATTATATAAAGCTATAGTAAATCTAGGA 45766 Query 1292 TAGAA 1296 ||||| Sbjct 45767 TAGAA 45771 >seq1668 Length=82418 Score = 77.0 bits (84), Expect = 6e-11 Identities = 75/97 (77%), Gaps = 11/97 (11%) Strand=Plus/Minus Query 1204 CTCTTTAAGATAAA----TAATATTATTTAAAGAGTTACCTATAAAATACCACAGCCACG 1259 ||||| |||||| | ||| |||||| ||| ||||||||||||||| |||| Sbjct 67447 CTCTTCAAGATATAAGTATAAAATTATTAAAA-------CTATAAAATACCACACCCACA 67395 Query 1260 AGAAATAATATGAAGCTATGGAAAATCTAGAATAGAA 1296 |||||| |||| ||||||| | |||||||| |||||| Sbjct 67394 AGAAATCATATAAAGCTATAGTAAATCTAGGATAGAA 67358 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8717609537350