Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Operophtera_20brumata_20[genbank_20GCA_5F001266575.1_202015-08-11] 25,801 sequences; 638,207,720 total letters Query= NC_008938.1 Length=2840 Score E Sequences producing significant alignments: (Bits) Value seq6422 168 1e-38 seq9855 163 5e-37 seq2447 141 2e-30 seq16437 116 7e-23 seq7981 102 1e-18 seq1896 98.7 2e-17 seq6263 95.1 2e-16 >seq6422 Length=30189 Score = 168 bits (186), Expect = 1e-38 Identities = 301/431 (70%), Gaps = 15/431 (3%) Strand=Plus/Minus Query 1423 CTAGAATTCCTATAGCTTTA-ATTATTTCCTGTGGCTGTGGTACTTTATTATTAACTCTT 1481 ||||| || | |||||| || ||||||||| |||||||||||| ||||| |||||||| Sbjct 21226 CTAGACTTACCATAGCTCTATATTATTTCCCGTGGCTGTGGTATTTTATATGTAACTCTT 21167 Query 1482 TTAATAGTTATAAATATCTTAAAGAGGTAAAAATAGTAAATAGCACTAGCTATATACCTA 1541 | ||| | || |||||||||||||||| |||||| | |||| | ||||| | | ||| Sbjct 21166 TACATAAGTTTATATATCTTAAAGAGGTATAAATAGCATATAGTATAAGCTA-ACAGCTA 21108 Query 1542 GAAATATATTGCTATA-AGTATAGACACTAAAAGCTATAGGAATATAAAGTATAAATATA 1600 ||||| |||||||||| | |||| || |||||| |||| ||| ||| ||||| | ||| Sbjct 21107 GAAATGTATTGCTATAGGGCATAGCCAATAAAAGTTATATGAAAATATAGTAT-AGCATA 21049 Query 1601 AGCTGCGATGGGACGGAATGAACCCGCCATA-CCNNNNNNNTGTNNCACTTGGGCACTTC 1659 ||||| | || || | || | |||| | || | || | ||| ||||| Sbjct 21048 AGCTGAGGTGAGATGATCTG-GGCTGCCACACCCGCCACCAATTTCCAATCGGGGACTTC 20990 Query 1660 CAGTAAGAATTTTCGGACGATCCATGGA-TCGTTGGATTCCTCTCAATAAGCCTAATGCA 1718 ||||| ||||| || ||| ||||||| |||||||||| ||| | | ||| | Sbjct 20989 CAGTAGCCATTTTTGGTCGA-CCATGGACCCGTTGGATTCGTCTTGACGCGAGGAATCCG 20931 Query 1719 ATGGGTCATGTCCCGAATGTGTGACCTTGAAGGATGTTGGTCCTCAACACCAAATATGTT 1778 ||| | | || || | ||||||||||||| | || |||| | || || | Sbjct 20930 ATGAGCCTAATCACGGGAGGGTGACCTTGAAGGGTAACTTTCTACAACCACGAAAATAAT 20871 Query 1779 CCAAATGTGTGGTGGATAttttttttCGGAAACAACTTTTTC-----ATCGCAATTAGTG 1833 | | ||| || | | || |||||||| ||| || | ||| |||||||||| || Sbjct 20870 CAACATGAGTAGCAGGTAATTTTTTTC--AAAAAATGTATTCCCTCAATCGCAATTAATG 20813 Query 1834 AACTTGGTCAA 1844 | || |||||| Sbjct 20812 ATCTCGGTCAA 20802 >seq9855 Length=15086 Score = 163 bits (180), Expect = 5e-37 Identities = 300/431 (70%), Gaps = 15/431 (3%) Strand=Plus/Minus Query 1423 CTAGAATTCCTATAGCTTTA-ATTATTTCCTGTGGCTGTGGTACTTTATTATTAACTCTT 1481 ||||| || | |||||| || ||||||||| |||||||||||| ||||| |||||||| Sbjct 3242 CTAGACTTACCATAGCTCTATATTATTTCCCGTGGCTGTGGTATTTTATATGTAACTCTT 3183 Query 1482 TTAATAGTTATAAATATCTTAAAGAGGTAAAAATAGTAAATAGCACTAGCTATATACCTA 1541 | ||| | || |||||||||||||||| |||||| | |||| ||||| | | ||| Sbjct 3182 TACATAAGTTTATATATCTTAAAGAGGTATAAATAGCATATAGTGTAAGCTA-ACAGCTA 3124 Query 1542 GAAATATATTGCTATA-AGTATAGACACTAAAAGCTATAGGAATATAAAGTATAAATATA 1600 ||||| |||||||||| | |||| || |||||| |||| ||| ||| ||||| | ||| Sbjct 3123 GAAATGTATTGCTATAGGGCATAGCCAATAAAAGTTATATGAAAATATAGTAT-AGCATA 3065 Query 1601 AGCTGCGATGGGACGGAATGAACCCGCCATA-CCNNNNNNNTGTNNCACTTGGGCACTTC 1659 ||||| | || || | || | |||| | || | || | ||| ||||| Sbjct 3064 AGCTGAGGTGTGATGATCTG-GGCTGCCACACCCGCCACCAATTTCCAATCGGGGACTTC 3006 Query 1660 CAGTAAGAATTTTCGGACGATCCATGGA-TCGTTGGATTCCTCTCAATAAGCCTAATGCA 1718 ||||| ||||| || ||| ||||||| |||||||||| ||| | | ||| | Sbjct 3005 CAGTAGCCATTTTTGGTCGA-CCATGGACCCGTTGGATTCGTCTTGACGCGAGGAATCCG 2947 Query 1719 ATGGGTCATGTCCCGAATGTGTGACCTTGAAGGATGTTGGTCCTCAACACCAAATATGTT 1778 ||| | | || || | ||||||||||||| | || |||| | || || | Sbjct 2946 ATGAGCCTAATCACGGGAGGGTGACCTTGAAGGGTAACTTTCTACAACCACGAAAATAAT 2887 Query 1779 CCAAATGTGTGGTGGATAttttttttCGGAAACAACTTTTTC-----ATCGCAATTAGTG 1833 | | ||| || | | || |||||||| ||| || | ||| |||||||||| || Sbjct 2886 CAACATGAGTAGCAGGTAATTTTTTTC--AAAAAATGTATTCCCTCAATCGCAATTAATG 2829 Query 1834 AACTTGGTCAA 1844 | || |||||| Sbjct 2828 ATCTCGGTCAA 2818 >seq2447 Length=64305 Score = 141 bits (156), Expect = 2e-30 Identities = 143/180 (79%), Gaps = 6/180 (3%) Strand=Plus/Plus Query 1420 ATTCTAGAATTCCTATAGCTTTA-ATTATTTCCTGTGGCTGTGGTACTTTATTATTAACT 1478 |||||||| || |||||||| || | ||||| |||||||||||| ||||| |||| Sbjct 3144 ATTCTAGATTTGCTATAGCTCTATACGATTTCTTGTGGCTGTGGTTATTTATATCAAACT 3203 Query 1479 CTTTTAATAGTTATAAATATCTTAAAGAGGTAAAAATAGTAAATAGCACTAGCTATATAC 1538 |||| |||| | || |||||||||||||||| |||||| |||||| |||||||||||| Sbjct 3204 CTTTAAATAAGTTTATATATCTTAAAGAGGTATAAATAGGAAATAGAACTAGCTATATAG 3263 Query 1539 CTAGAAATATATTGCTATAAGTATAGACACTAAAAGCTATAGGAA--TATAA-AGTATAA 1595 ||||||| |||| ||||| ||| || || ||| ||||| || ||||| ||||||| Sbjct 3264 TTAGAAATGTATTATAATAAGCGTAGTCA-TATAAG-TATAGTAAATTATAATAGTATAA 3321 >seq16437 Length=3918 Score = 116 bits (128), Expect = 7e-23 Identities = 116/144 (81%), Gaps = 6/144 (4%) Strand=Plus/Minus Query 1488 GTTATAAATATCTTAAAGAGGTAAAAATAGTAAATAGCACTAGCTATATACCTAGAAATA 1547 ||||| |||||||||||||||| |||||| |||||| |||||||||||| ||||||| Sbjct 1169 GTTATTTATATCTTAAAGAGGTATAAATAGGAAATAGAACTAGCTATATAGTTAGAAATG 1110 Query 1548 TATTGCTATAAGTATAGACACTAAAAGCTATAGGAA--TATAA-AGTATAAATATAAGCT 1604 |||| ||||| ||| || |||||| ||||| || ||||| ||||| |||||||||| Sbjct 1109 TATTATAATAAGCGTAGTCA-TAAAAG-TATAGTAAATTATAATAGTAT-AATATAAGCT 1053 Query 1605 GCGATGGGACGGAATGAACCCGCC 1628 | | | |||| | || ||||||| Sbjct 1052 GAGGTTGGACTGGATATACCCGCC 1029 >seq7981 Length=21338 Score = 102 bits (112), Expect = 1e-18 Identities = 113/148 (76%), Gaps = 12/148 (8%) Strand=Plus/Minus Query 1474 TAACTCTTTTAATA-----GTTATAAATATCTTAAAGAGGTAAAAATAGTAAATAGCACT 1528 |||||||||||||| ||| |||||||| ||||||| || |||||| | || | | | Sbjct 10340 TAACTCTTTTAATACCCAAGTT-TAAATATCCTAAAGAGATAGAAATAGGATATGGTATT 10282 Query 1529 AGCTATA----TACCTAGAAATATATTGCTATAAGTATAGACACTAAAAGCTATAGGAAT 1584 ||||||| | ||||||| ||| ||| | |||||| | |||||||||||||||| Sbjct 10281 AGCTATAGGTGTGGCTAGAAAGGTATAACTAAAGGTATAGCCGTTAAAAGCTATAGGAAT 10222 Query 1585 ATA--AAGTATAAATATAAGCTGCGATG 1610 ||| |||||||||||| ||| |||| Sbjct 10221 ATATGGTGTATAAATATAAACTGTGATG 10194 >seq1896 Length=105120 Score = 98.7 bits (108), Expect = 2e-17 Identities = 109/141 (77%), Gaps = 7/141 (5%) Strand=Plus/Minus Query 1420 ATTCTAGAATTCCTATAGCTTTA-ATTATTTCCTGTGGCTGTGGTACTTTATTATT-AAC 1477 || ||||| || ||||||||||| || ||||| ||||||||||||| ||||| || || Sbjct 45767 ATCCTAGATTTACTATAGCTTTATATAATTTCTTGTGGCTGTGGTATTTTATAGTTTAAA 45708 Query 1478 TCTTTTAATAGTTATAAATATCTTAAAGAGGTAAAAATAGTAA-ATAGCACTAGCTATAT 1536 | ||| ||| ||||| |||| ||| || | |||||| ||||||||||||| | Sbjct 45707 TAATTTTATACTTATA----TCTTGAAGGGGAATAAATAGGGTTATAGCACTAGCTAGAG 45652 Query 1537 ACCTAGAAATATATTGCTATA 1557 ||||| |||| ||||||||| Sbjct 45651 ACCTAATAATAAATTGCTATA 45631 >seq6263 Length=31128 Score = 95.1 bits (104), Expect = 2e-16 Identities = 95/122 (78%), Gaps = 6/122 (5%) Strand=Plus/Plus Query 1499 CTTAAAGAGGTAAAAATAGTAAATAGCACTAGCTATATACCTAGAAATATATTGCTATAA 1558 ||||||||| || |||||| | || | | ||||||||| ||||||| ||| |||| | Sbjct 12660 CTTAAAGAGATATAAATAGGATATGGTATTAGCTATATGGCTAGAAAGGTATAGCTAAAG 12719 Query 1559 GTATAGACAC----TAAAAGCTATAGGAATATAAAG--TATAAATATAAGCTGCGATGGG 1612 |||||| | ||||||||||| ||||||| || ||||||||||||||| |||| | Sbjct 12720 GTATAGGTAGCCGTTAAAAGCTATACGAATATATAGTATATAAATATAAGCTGTGATGAG 12779 Query 1613 AC 1614 || Sbjct 12780 AC 12781 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8973466986825