Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Operophtera_20brumata_20[genbank_20GCA_5F001266575.1_202015-08-11] 25,801 sequences; 638,207,720 total letters Query= NC_008939.1 Length=3008 Score E Sequences producing significant alignments: (Bits) Value seq9855 129 1e-26 seq6422 127 4e-26 seq2447 98.7 2e-17 >seq9855 Length=15086 Score = 129 bits (142), Expect = 1e-26 Identities = 203/278 (73%), Gaps = 26/278 (9%) Strand=Plus/Plus Query 64 AGACGAACCCAACGAGCCCTTG----ACCATGGCAAAATTCCTAATAGAAGTTCCCGGAT 119 ||||||| |||||| | || || |||| ||||| ||| | ||||| |||| || Sbjct 2963 AGACGAATCCAACGGGTCCATGGTCGACCA----AAAATGGCTACTGGAAGTCCCCG-AT 3017 Query 120 AGCGAAT--GTGGCGGGTGTGGC-GGCCAAATCCTATCCCACCTTAGCTTATGTT----T 172 | ||| |||||||||||||| | ||| ||| ||| ||||| |||||||| | | Sbjct 3018 TGGAAATTGGTGGCGGGTGTGGCAGCCCAGATC--ATCACACCTCAGCTTATGCTATACT 3075 Query 173 ATA---CCATAT-ACTTTCA-TAGCTATGTTC-ATAGCTATATATTCCTATTCACATAGC 226 ||| ||||| ||||| | | |||||| | ||||| ||| ||| ||| | |||| Sbjct 3076 ATATTTTCATATAACTTTTATTGGCTATGCCCTATAGCAATACATTTCTA-GCTGTTAGC 3134 Query 227 TATCatatttatactatatttacctctttaagataaatatttttattaaaagagttatat 286 | || | ||| |||| | ||||||||||||||| ||| |||| ||||||||| || Sbjct 3135 TTACA-CTATATGCTATTTATACCTCTTTAAGATATATAAACTTATGTAAAGAGTTACAT 3193 Query 287 ataaaataCCACAGCCACAAGAATTTATATAAATCTAT 324 |||||||||||||||||| ||| | ||||| | |||| Sbjct 3194 ATAAAATACCACAGCCACGGGAAATAATATAGAGCTAT 3231 >seq6422 Length=30189 Score = 127 bits (140), Expect = 4e-26 Identities = 204/279 (73%), Gaps = 28/279 (10%) Strand=Plus/Plus Query 64 AGACGAACCCAACGAGCCCTTG----ACCATGGCAAAATTCCTAATAGAAGTTCCCGGAT 119 ||||||| |||||| | || || |||| ||||| ||| | ||||| |||| || Sbjct 20947 AGACGAATCCAACGGGTCCATGGTCGACCA----AAAATGGCTACTGGAAGTCCCCG-AT 21001 Query 120 AGCGAAT--GTGGCGGGTGTGGC-GGCCAAATCCTATCCCACCTTAGCTTATGTT----T 172 | ||| |||||||||||||| | ||| ||| ||| ||||| |||||||| | | Sbjct 21002 TGGAAATTGGTGGCGGGTGTGGCAGCCCAGATC--ATCTCACCTCAGCTTATGCTATACT 21059 Query 173 ATA---CCATAT-ACTTTCA-TAGCTATGTTC-ATAGCTATATATTCCTATTCACATAGC 226 ||| ||||| ||||| | | |||||| | ||||| ||| ||| ||| | |||| Sbjct 21060 ATATTTTCATATAACTTTTATTGGCTATGCCCTATAGCAATACATTTCTA-GCTGTTAGC 21118 Query 227 TATCata-tttatactatatttacctctttaagataaatatttttattaaaagagttata 285 | ||| | ||| |||| | ||||||||||||||| ||| |||| ||||||||| | Sbjct 21119 --TTATACTATATGCTATTTATACCTCTTTAAGATATATAAACTTATGTAAAGAGTTACA 21176 Query 286 tataaaataCCACAGCCACAAGAATTTATATAAATCTAT 324 ||||||||||||||||||| ||| | ||||| | |||| Sbjct 21177 TATAAAATACCACAGCCACGGGAAATAATATAGAGCTAT 21215 >seq2447 Length=64305 Score = 98.7 bits (108), Expect = 2e-17 Identities = 104/135 (77%), Gaps = 3/135 (2%) Strand=Plus/Minus Query 206 ATATATTCCTATTCACATAGCTA-TCatatttatactatatttacctctttaagataaat 264 ||| ||| ||| | ||||||| | ||||| |||| | ||||||||||||||| || Sbjct 3275 ATACATTTCTAACTATATAGCTAGTTCTATTTC--CTATTTATACCTCTTTAAGATATAT 3218 Query 265 atttttattaaaagagttatatataaaataCCACAGCCACAAGAATTTATATAAATCTAT 324 | ||||| |||||||| ||||||| |||||||||||||||| | |||| | |||| Sbjct 3217 AAACTTATTTAAAGAGTTTGATATAAATAACCACAGCCACAAGAAATCGTATAGAGCTAT 3158 Query 325 AGCAATTTCAGAATA 339 ||||| | |||||| Sbjct 3157 AGCAAATCTAGAATA 3143 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 9510915276945