Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Operophtera_20brumata_20[genbank_20GCA_5F001266575.1_202015-08-11] 25,801 sequences; 638,207,720 total letters Query= NC_008940.1 Length=3140 Score E Sequences producing significant alignments: (Bits) Value seq9855 159 7e-36 seq6422 159 7e-36 seq2447 95.1 2e-16 seq1896 86.0 1e-13 >seq9855 Length=15086 Score = 159 bits (176), Expect = 7e-36 Identities = 192/252 (76%), Gaps = 7/252 (3%) Strand=Plus/Minus Query 2876 GATGTGGCGAGCGTGACAGCCATATTCTA-TCCTAGATTTTCTATAGCCTTATATTAATA 2934 |||||||| | |||| | |||| |||||| | ||||| || | ||||| ||||||| | Sbjct 3273 GATGTGGCAAACGTGGCTGCCA-ATTCTAGTACTAGACTTACCATAGCTCTATATTATTT 3215 Query 2935 TCCGTGGCTATGGTAGTTTATAAATAACTCTTTTAATAATTATAATTGTCTTAAAGAGGT 2994 |||||||| ||||| |||||| ||||||||| |||| | || | |||||||||||| Sbjct 3214 CCCGTGGCTGTGGTATTTTATATGTAACTCTTTACATAAGTTTATATATCTTAAAGAGGT 3155 Query 2995 AAATTATAGTAAATAGCATTAGCTATATAGATATGAATATATTGCTATA-GGTATAGCCA 3053 | | |||| | |||| | ||||| | || || ||| |||||||||| || ||||||| Sbjct 3154 ATA-AATAGCATATAGTGTAAGCTA-ACAGCTAGAAATGTATTGCTATAGGGCATAGCCA 3097 Query 3054 ATAAAAGGTATATGACTATGGCGTATAAATATAAGCTAAGGCGGGATTGAAATTGGCGGC 3113 ||||||| ||||||| || |||| | ||||||| ||| | || ||| | ||| || Sbjct 3096 ATAAAAGTTATATGAAAATATAGTAT-AGCATAAGCTGAGGTGTGA-TGATCTGGGCTGC 3039 Query 3114 CACACCTGCCAC 3125 |||||| ||||| Sbjct 3038 CACACCCGCCAC 3027 >seq6422 Length=30189 Score = 159 bits (176), Expect = 7e-36 Identities = 192/252 (76%), Gaps = 7/252 (3%) Strand=Plus/Minus Query 2876 GATGTGGCGAGCGTGACAGCCATATTCTA-TCCTAGATTTTCTATAGCCTTATATTAATA 2934 ||||||| | |||| | |||| |||||| | ||||| || | ||||| ||||||| | Sbjct 21257 GATGTGGTAAACGTGGCTGCCA-ATTCTAGTACTAGACTTACCATAGCTCTATATTATTT 21199 Query 2935 TCCGTGGCTATGGTAGTTTATAAATAACTCTTTTAATAATTATAATTGTCTTAAAGAGGT 2994 |||||||| ||||| |||||| ||||||||| |||| | || | |||||||||||| Sbjct 21198 CCCGTGGCTGTGGTATTTTATATGTAACTCTTTACATAAGTTTATATATCTTAAAGAGGT 21139 Query 2995 AAATTATAGTAAATAGCATTAGCTATATAGATATGAATATATTGCTATA-GGTATAGCCA 3053 | | |||| | |||| || ||||| | || || ||| |||||||||| || ||||||| Sbjct 21138 ATA-AATAGCATATAGTATAAGCTA-ACAGCTAGAAATGTATTGCTATAGGGCATAGCCA 21081 Query 3054 ATAAAAGGTATATGACTATGGCGTATAAATATAAGCTAAGGCGGGATTGAAATTGGCGGC 3113 ||||||| ||||||| || |||| | ||||||| ||| | || ||| | ||| || Sbjct 21080 ATAAAAGTTATATGAAAATATAGTAT-AGCATAAGCTGAGGTGAGA-TGATCTGGGCTGC 21023 Query 3114 CACACCTGCCAC 3125 |||||| ||||| Sbjct 21022 CACACCCGCCAC 21011 >seq2447 Length=64305 Score = 95.1 bits (104), Expect = 2e-16 Identities = 104/137 (76%), Gaps = 1/137 (1%) Strand=Plus/Plus Query 2901 TCTATCCTAGATTTTCTATAGCCTTATATTAATATCCGTGGCTATGGTAGTTTATAAATA 2960 ||||| |||||||| ||||||| |||| | | |||||| |||| |||||| | Sbjct 3141 TCTATTCTAGATTTGCTATAGCTCTATACGATTTCTTGTGGCTGTGGTTATTTATATCAA 3200 Query 2961 ACTCTTTTAATAATTATAATTGTCTTAAAGAGGTAAATTATAGTAAATAGCATTAGCTAT 3020 ||||||| ||||| | || | ||||||||||||| | |||| |||||| | ||||||| Sbjct 3201 ACTCTTTAAATAAGTTTATATATCTTAAAGAGGTATA-AATAGGAAATAGAACTAGCTAT 3259 Query 3021 ATAGATATGAATATATT 3037 |||| || ||| |||| Sbjct 3260 ATAGTTAGAAATGTATT 3276 >seq1896 Length=105120 Score = 86.0 bits (94), Expect = 1e-13 Identities = 119/160 (74%), Gaps = 9/160 (6%) Strand=Plus/Minus Query 2900 TTCTATCCTAGATTTTCTATAGCCTTATATTAATATC-CGTGGCTATGGTAGTTTATA-A 2957 ||||||||||||||| ||||||| ||||| |||| || |||||| ||||| |||||| Sbjct 45771 TTCTATCCTAGATTTACTATAGCTTTATA-TAATTTCTTGTGGCTGTGGTATTTTATAGT 45713 Query 2958 ATAACTCTTTTAATAATTATAATTGTCTTAAAGAGGTA-AATTATAGTAAATAGCATTAG 3016 ||| | ||| ||| ||||| |||| ||| || | || || || |||||| ||| Sbjct 45712 TTAAATAATTTTATACTTATA----TCTTGAAGGGGAATAAATAGGGT-TATAGCACTAG 45658 Query 3017 CTATATAGATATGAATATATTGCTATAGGTATAGCCAATA 3056 ||| | | || |||| |||||||||| || |||| || Sbjct 45657 CTAGAGACCTAATAATAAATTGCTATAGTTAATGCCATTA 45618 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 9933196076325