Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Operophtera_20brumata_20[genbank_20GCA_5F001266575.1_202015-08-11] 25,801 sequences; 638,207,720 total letters Query= NC_008947.1 Length=2755 Score E Sequences producing significant alignments: (Bits) Value seq3364 389 7e-105 >seq3364 Length=54413 Score = 389 bits (430), Expect = 7e-105 Identities = 407/534 (76%), Gaps = 42/534 (8%) Strand=Plus/Plus Query 993 GCGCTTATAAGTATCATCACACTCTAGTACTCCTGTTGAAAAAATAACTTGGATTCTAGC 1052 || |||||| |||||||| |||| ||||||||||||| ||||| ||||| ||| |||| Sbjct 46678 GCACTTATAGGTATCATCCCACTTTAGTACTCCTGTTTGAAAAAGAACTTCAATTATAGC 46737 Query 1053 ACTAGTGGGTCTTGTATGAATGCCCGCTATGAATGCTGCGCCGTAGTCCAGCGTCATGCT 1112 |||||||| |||||| || |||||||||||||||| |||| | |||||||||||||||| Sbjct 46738 ACTAGTGGATCTTGT--GAGTGCCCGCTATGAATGCAGCGCTGCAGTCCAGCGTCATGCT 46795 Query 1113 CACATAATGCAAACGCAGATAAAGCGCTGTATATGGCCTACGAGATGCGGGTGACCGCTG 1172 ||||| ||||||| | | |||||| ||||| |||||| ||||||||||||||||||| Sbjct 46796 CACATTATGCAAAAGTGGC-AAAGCGGTGTAT--GGCCTATGAGATGCGGGTGACCGCTG 46852 Query 1173 CATGTCAACGATAAGCAGATGATTCTACAAGAAGTATGTTTGCTCTAACCGTTTCAAATG 1232 |||| |||| | ||||||| |||||||||||| |||||||| |||| |||| | | Sbjct 46853 CATGGCAACAA--AGCAGATAATTCTACAAGAATTATGTTTGTTCTAGGCGTTCTAGGTA 46910 Query 1233 TCATTCTCTTTCTGTGAGAACGTGAGCTGTAGGTTTCTGATCATTCGGTCCCAGCTCGGA 1292 || |||| |||||||||||||||||||||||||| ||||| ||||||| ||| Sbjct 46911 TCGTTCT------GTGAGAACGTGAGCTGTAGGTTTCTGGCAATTCGCCCCCAGCTTGGA 46964 Query 1293 TGCTGATGCTGCGGCCCTAGCCATGAAAGTTCCCTGCTGGGTTTGGAACCATATGTTAAT 1352 ||||||||||||||||| ||| || | || | ||| || || |||| | Sbjct 46965 TGCTGATGCTGCGGCCCCAGCAATTCATATTGCTTGC-----TTTGACCCAT------AC 47013 Query 1353 TCATCGCATCTTCAAGGGGGCACATACAAAACAAGTAGATATTTTTTAAAATGCAT---- 1408 |||| || || ||| ||||||||||||| | || | ||||| |||||||| Sbjct 47014 TCATATCACTTTAGAGGCGGCACATACAAAATAGGTCAAAATTTTCGGAAATGCATCTGA 47073 Query 1409 -----------TATAATATCTTCATCAGCGAATACGAAAATATCATCCTTGGGTTGCCTA 1457 |||| |||||||||| | ||||||||||| | ||||| || |||| Sbjct 47074 CCCCTATGCACTATAGAATCTTCATCACTGGATACGAAAATAGTACCCTTGCCTTACCTA 47133 Query 1458 GACGCTTAATTTCAAAGTTATTATAGTCCATACGCTATCGTGTCACTGACTGTA 1511 || ||||||||| ||| |||||| || ||||||| ||||||| |||||||| Sbjct 47134 GATGCTTAATTTTGAAG---TTATAGACCGTACGCTACCGTGTCATTGACTGTA 47184 Score = 87.8 bits (96), Expect = 3e-14 Identities = 66/78 (85%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 540 AATAGGAATGCTGGACACTCATCGTGAAAAACAGTTCAAAAGTTTGTACATTCAGTATAC 599 |||| ||||| || || ||| | ||||| |||||||||||||||||| || ||||||| Sbjct 46340 AATATAAATGCCGGGCATTCACAGGGAAAAGCAGTTCAAAAGTTTGTACCTTTAGTATAC 46399 Query 600 AGGTAAAACATATCTATT 617 |||||||||||| ||||| Sbjct 46400 AGGTAAAACATACCTATT 46417 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8704813046286