Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Operophtera_20brumata_20[genbank_20GCA_5F001266575.1_202015-08-11] 25,801 sequences; 638,207,720 total letters Query= NC_008953.1 Length=3935 Score E Sequences producing significant alignments: (Bits) Value seq21650 114 3e-22 seq4529 105 2e-19 seq1947 78.8 2e-11 >seq21650 Length=1554 Score = 114 bits (126), Expect = 3e-22 Identities = 141/193 (73%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 3332 ACCCCATGAAGCGAGTCTTTCCAACAATCACTCGATGTACTTTTCACAAATACGGTCCTT 3391 |||||||| || || || || | | ||||| ||| ||||| ||||||||||| |||| Sbjct 241 ACCCCATGGTTCGGGTGTTCCCTAAAGTCACTAAATGCACTTTCCACAAATACGGGCCTT 300 Query 3392 CGGGCTCCCTGGAAAACTACGAGGGACTCTGCATCCTCCCGGAGAACGTGGTCAACGAGA 3451 |||| | |||| || || ||||| ||| | || ||| |||| | ||||| |||| Sbjct 301 CGGGAAGCGTGGAGCACCTTGACGGACTGTGCGTGCTGCCGTTGAACATAGTCAATGAGA 360 Query 3452 AGATCTACATTTTCCTCTGGTTCTGGTTCTACGTGCTAGCCATCATCAGCGGTATCGTTG 3511 |||||||| | ||||| |||||||||||| | | || | ||| | || |||||| Sbjct 361 AGATCTACGTGTTCCTGTGGTTCTGGTTCATCATACTGTCGATCCTGAGTGGTATCTCCC 420 Query 3512 TTCTGTACCGCAT 3524 | |||||||| || Sbjct 421 TGCTGTACCGTAT 433 >seq4529 Length=57856 Score = 105 bits (116), Expect = 2e-19 Identities = 141/196 (72%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 3332 ACCCCATGAAGCGAGTCTTTCCAACAATCACTCGATGTACTTTTCACAAATACGGTCCTT 3391 |||||||| || || || || | | | || ||| || || |||||||||||||||| Sbjct 28469 ACCCCATGGCTCGGGTGTTCCCTAAAGTGACAAAATGCACCTTCCACAAATACGGTCCTT 28410 Query 3392 CGGGCTCCCTGGAAAACTACGAGGGACTCTGCATCCTCCCGGAGAACGTGGTCAACGAGA 3451 |||| || || | || | ||| ||||| ||| | || ||| |||| | ||||| |||| Sbjct 28409 CGGGAACCGTGCAGAAGTTCGACGGACTGTGCGTGCTGCCGTTGAACATAGTCAATGAGA 28350 Query 3452 AGATCTACATTTTCCTCTGGTTCTGGTTCTACGTGCTAGCCATCATCAGCGGTATCGTTG 3511 |||| ||| | ||||| |||||||||||| | || | ||| | || |||||| Sbjct 28349 AGATATACGTATTCCTGTGGTTCTGGTTCATGATCCTGTCAATCCTGAGTGGTATCTCAC 28290 Query 3512 TTCTGTACCGCATTGC 3527 | |||||||| || || Sbjct 28289 TGCTGTACCGTATGGC 28274 Score = 87.8 bits (96), Expect = 4e-14 Identities = 137/196 (70%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 3332 ACCCCATGAAGCGAGTCTTTCCAACAATCACTCGATGTACTTTTCACAAATACGGTCCTT 3391 |||||||| || || || || | | | || ||| || || |||||||| ||| ||| Sbjct 44899 ACCCCATGGTTCGGGTGTTCCCTAAAGTGACAAAATGCACCTTCCACAAATATGGTTCTT 44840 Query 3392 CGGGCTCCCTGGAAAACTACGAGGGACTCTGCATCCTCCCGGAGAACGTGGTCAACGAGA 3451 |||| | |||| || || ||| | ||| | || ||| |||| | ||||| |||| Sbjct 44839 CGGGAGGCGTGGAGCACCTTGACGGAATGTGCGTGCTGCCGTTGAACATAGTCAATGAGA 44780 Query 3452 AGATCTACATTTTCCTCTGGTTCTGGTTCTACGTGCTAGCCATCATCAGCGGTATCGTTG 3511 |||||||| | ||| | |||||||||||| | | || | ||| | || |||||| Sbjct 44779 AGATCTACGTGTTCTTGTGGTTCTGGTTCATCATCCTGTCGATCCTGAGTGGTATCTCCC 44720 Query 3512 TTCTGTACCGCATTGC 3527 | |||||||| || || Sbjct 44719 TGCTGTACCGTATGGC 44704 >seq1947 Length=76570 Score = 78.8 bits (86), Expect = 2e-11 Identities = 60/71 (85%), Gaps = 0/71 (0%) Strand=Plus/Plus Query 3410 ACGAGGGACTCTGCATCCTCCCGGAGAACGTGGTCAACGAGAAGATCTACATTTTCCTCT 3469 |||| | || |||||||||||| ||||| |||||||||||||| ||| | ||||||| Sbjct 45754 ACGACGCGCTGTGCATCCTCCCGCTCAACGTTGTCAACGAGAAGATATACGTCTTCCTCT 45813 Query 3470 GGTTCTGGTTC 3480 ||||||||||| Sbjct 45814 GGTTCTGGTTC 45824 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 12476478163500